Wall clock time and date at job start Mon Mar 30 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47603 * 2 1 4 4 C 1.50703 * 109.47159 * 239.99741 * 2 1 3 5 5 H 1.07997 * 119.99887 * 239.99925 * 4 2 1 6 6 C 1.37868 * 119.99742 * 60.00411 * 4 2 1 7 7 N 1.31517 * 120.00225 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00075 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46775 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47053 * 119.99687 * 8 6 4 11 11 H 1.48501 * 109.47203 * 239.99716 * 8 6 4 12 12 C 1.53008 * 109.47314 * 120.00080 * 2 1 3 13 13 N 1.46506 * 109.46685 * 299.99752 * 12 2 1 14 14 C 1.34774 * 119.99810 * 179.97438 * 13 12 2 15 15 O 1.21285 * 120.00117 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00214 * 180.02562 * 14 13 12 17 17 H 1.09004 * 109.62525 * 334.60454 * 16 14 13 18 18 C 1.53246 * 109.63029 * 214.01390 * 16 14 13 19 19 N 1.46514 * 109.79091 * 178.25772 * 18 16 14 20 20 C 1.46467 * 112.53335 * 72.77821 * 19 18 16 21 21 C 1.53250 * 109.79543 * 287.22087 * 20 19 18 22 22 S 1.81895 * 108.50680 * 62.04319 * 21 20 19 23 23 H 1.09007 * 109.46776 * 299.99884 * 1 2 3 24 24 H 1.08997 * 109.47022 * 59.99501 * 1 2 3 25 25 H 1.08995 * 109.47397 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.48031 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47339 * 300.00305 * 3 2 1 28 28 H 1.09008 * 109.47351 * 59.99861 * 3 2 1 29 29 H 0.97005 * 120.00285 * 180.02562 * 7 6 4 30 30 H 1.08993 * 109.47756 * 180.02562 * 12 2 1 31 31 H 1.09001 * 109.46906 * 59.99149 * 12 2 1 32 32 H 0.97000 * 120.00202 * 0.02562 * 13 12 2 33 33 H 1.08993 * 109.41127 * 298.40736 * 18 16 14 34 34 H 1.09001 * 109.40580 * 58.25442 * 18 16 14 35 35 H 1.00896 * 111.07372 * 307.62538 * 19 18 16 36 36 H 1.09002 * 109.40640 * 167.14035 * 20 19 18 37 37 H 1.08997 * 109.40556 * 47.30161 * 20 19 18 38 38 H 1.08992 * 109.63202 * 181.75001 * 21 20 19 39 39 H 1.08998 * 109.63045 * 302.14200 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6033 8 14 2.3214 -1.1204 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1466 -0.1875 -4.8165 12 6 2.0401 -0.7213 1.2493 13 7 1.5517 -0.0306 2.4455 14 6 1.8769 -0.4913 3.6695 15 8 2.5742 -1.4774 3.7809 16 6 1.3742 0.2188 4.9000 17 1 1.1745 1.2640 4.6637 18 6 2.4255 0.1298 6.0115 19 7 1.9579 0.8546 7.1958 20 6 0.8835 0.1488 7.8979 21 6 -0.4140 0.2408 7.0876 22 16 -0.1529 -0.5782 5.4846 23 1 -0.3633 0.5139 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9564 0.8900 29 1 0.7082 1.1609 -3.4844 30 1 3.1300 -0.7209 1.2496 31 1 1.6766 -1.7489 1.2493 32 1 0.9938 0.7579 2.3564 33 1 2.5933 -0.9160 6.2685 34 1 3.3591 0.5715 5.6631 35 1 1.6786 1.7947 6.9590 36 1 0.7318 0.6025 8.8774 37 1 1.1592 -0.8983 8.0226 38 1 -1.2188 -0.2584 7.6271 39 1 -0.6735 1.2875 6.9294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699081969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:56 Heat of formation + Delta-G solvation = -62.415797 kcal Electronic energy + Delta-G solvation = -19356.474006 eV Core-core repulsion = 16423.934683 eV Total energy + Delta-G solvation = -2932.539323 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.99336 -38.58749 -37.94740 -35.07529 -33.20250 -32.42714 -29.87081 -27.59132 -27.50546 -26.84890 -24.67145 -23.01961 -21.70215 -20.65176 -18.96205 -18.25621 -17.67943 -16.99708 -16.55451 -16.41853 -15.93525 -15.76783 -15.30417 -15.04062 -14.96222 -14.72619 -14.17256 -13.99989 -13.93131 -13.20970 -13.14648 -12.98474 -12.72337 -12.70958 -12.58671 -12.28243 -12.15472 -12.03010 -11.51614 -11.34399 -11.14398 -11.00538 -10.71628 -10.41888 -10.05389 -9.77298 -8.77265 -8.03784 -6.19623 0.16697 1.32569 1.40744 1.45018 1.54333 1.84260 2.12887 2.46521 3.08592 3.19990 3.45030 3.66711 3.77360 3.96472 4.10869 4.38534 4.41008 4.44231 4.47217 4.67914 4.71864 4.88180 4.94847 4.95259 5.02555 5.07749 5.16566 5.30344 5.51932 5.64559 5.66008 5.78760 6.12156 6.18744 6.28809 6.41247 6.51461 6.84248 7.14809 7.48313 8.95345 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042576 B = 0.003930 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.489396 B = 7123.300735 C = 7264.878153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.120 4.120 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.148 3.852 13 N -0.701 5.701 14 C 0.527 3.473 15 O -0.573 6.573 16 C -0.102 4.102 17 H 0.129 0.871 18 C 0.084 3.916 19 N -0.683 5.683 20 C 0.056 3.944 21 C -0.109 4.109 22 S -0.276 6.276 23 H 0.034 0.966 24 H 0.063 0.937 25 H 0.015 0.985 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.044 0.956 31 H 0.036 0.964 32 H 0.409 0.591 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.356 0.644 36 H 0.119 0.881 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.078 4.764 19.197 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.024 3.976 13 N -0.352 5.352 14 C 0.311 3.689 15 O -0.453 6.453 16 C -0.236 4.236 17 H 0.147 0.853 18 C -0.048 4.048 19 N -0.313 5.313 20 C -0.075 4.075 21 C -0.258 4.258 22 S -0.050 6.050 23 H 0.053 0.947 24 H 0.082 0.918 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.246 0.754 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.177 0.823 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.808 3.147 19.032 19.493 hybrid contribution -0.042 0.693 -1.516 1.667 sum -2.850 3.840 17.516 18.157 Atomic orbital electron populations 1.21662 0.97227 0.98522 1.00313 1.18370 0.93147 0.93215 0.90249 1.21659 0.98053 0.97610 1.00413 1.21285 1.31735 1.12164 0.91539 0.93747 1.25444 0.95104 0.95583 1.00959 1.69912 1.36937 1.23310 1.23573 0.85702 0.78123 0.78747 0.80209 1.20037 1.20767 1.20599 1.21328 0.97259 0.94971 0.84035 1.46134 1.52057 1.31862 1.05153 1.20083 0.80108 0.84163 0.84554 1.90675 1.39979 1.27569 1.87127 1.24123 0.98741 1.03211 0.97517 0.85276 1.21986 0.95472 1.00778 0.86574 1.60085 1.39837 1.06491 1.24865 1.22354 0.86421 1.00728 0.97953 1.24485 1.04042 1.04365 0.92928 1.87713 1.31017 1.58730 1.27585 0.94690 0.91775 0.96561 0.96054 0.91860 0.94465 0.93004 0.93769 0.94554 0.75397 0.90510 0.89069 0.82335 0.86279 0.90607 0.85186 0.87634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.08 71.98 0.58 -4.80 16 2 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 4 C -0.53 -28.06 8.01 25.60 0.21 -27.86 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -47.81 9.35 21.44 0.20 -47.61 16 8 Si 0.95 42.68 29.54 68.60 2.03 44.70 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.34 4.50 86.38 0.39 6.73 16 13 N -0.70 -24.37 4.96 -463.04 -2.30 -26.67 16 14 C 0.53 17.82 6.87 87.66 0.60 18.42 16 15 O -0.57 -24.00 16.30 -3.05 -0.05 -24.05 16 16 C -0.10 -2.44 3.03 29.93 0.09 -2.35 16 17 H 0.13 2.40 8.12 -2.39 -0.02 2.38 16 18 C 0.08 1.81 5.34 86.46 0.46 2.28 16 19 N -0.68 -10.33 6.70 -514.94 -3.45 -13.78 16 20 C 0.06 0.69 6.42 86.47 0.56 1.25 16 21 C -0.11 -1.39 6.59 72.07 0.47 -0.92 16 22 S -0.28 -6.60 21.75 -56.49 -1.23 -7.83 16 23 H 0.03 1.33 6.86 -2.38 -0.02 1.31 16 24 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 25 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 28 H 0.04 1.35 6.86 -2.38 -0.02 1.33 16 29 H 0.26 13.30 8.31 -92.70 -0.77 12.53 16 30 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.41 12.48 6.15 -92.71 -0.57 11.91 16 33 H 0.08 2.02 7.69 -2.39 -0.02 2.01 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.36 4.04 8.65 -89.70 -0.78 3.26 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.18 7.91 -2.39 -0.02 1.16 16 38 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -62.51 318.05 -0.74 -63.24 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -0.29 Total: 19.60 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.35 Total: -7.62 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -5.55 Total: -88.05 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.05 Total: -24.05 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -6.60 SS G_CDS: -1.23 Total: -7.83 kcal Total: -62.51 -0.74 -63.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699081969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.829 kcal (2) G-P(sol) polarization free energy of solvation -62.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds