Wall clock time and date at job start Mon Mar 30 2020 04:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.53196 * 2 1 4 4 C 1.53039 * 109.50258 * 239.90464 * 2 1 3 5 5 N 1.46849 * 109.52389 * 180.87874 * 4 2 1 6 6 C 1.46849 * 111.19649 * 61.73958 * 5 4 2 7 7 C 1.53036 * 109.52261 * 298.25713 * 6 5 4 8 8 C 1.53115 * 109.50450 * 120.09748 * 2 1 3 9 9 H 1.09003 * 109.57151 * 57.66007 * 8 2 1 10 10 N 1.46499 * 109.52683 * 297.50111 * 8 2 1 11 11 C 1.34778 * 120.00278 * 155.31386 * 10 8 2 12 12 O 1.21278 * 119.99748 * 0.02562 * 11 10 8 13 13 C 1.50697 * 120.00209 * 180.02562 * 11 10 8 14 14 S 1.80999 * 109.47181 * 180.02562 * 13 11 10 15 15 C 1.76199 * 99.99825 * 179.97438 * 14 13 11 16 16 H 1.08002 * 120.00405 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99855 * 179.72221 * 15 14 13 18 18 N 1.31634 * 119.99756 * 0.27728 * 17 15 14 19 19 Si 1.86803 * 120.00005 * 180.27923 * 17 15 14 20 20 H 1.48496 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48494 * 109.47141 * 119.99999 * 19 17 15 22 22 H 1.48498 * 109.47018 * 240.00046 * 19 17 15 23 23 H 1.09005 * 109.47107 * 299.89768 * 1 2 3 24 24 H 1.08993 * 109.47149 * 59.90233 * 1 2 3 25 25 H 1.08999 * 109.47173 * 179.90365 * 1 2 3 26 26 H 1.09001 * 109.47180 * 180.10183 * 3 2 1 27 27 H 1.08998 * 109.47198 * 300.09927 * 3 2 1 28 28 H 1.09002 * 109.47494 * 60.10298 * 3 2 1 29 29 H 1.08998 * 109.46195 * 60.86083 * 4 2 1 30 30 H 1.08999 * 109.45068 * 300.88646 * 4 2 1 31 31 H 1.00904 * 110.99559 * 297.64414 * 5 4 2 32 32 H 1.09001 * 109.45827 * 178.24629 * 6 5 4 33 33 H 1.08995 * 109.45429 * 58.26959 * 6 5 4 34 34 H 1.08997 * 109.50517 * 299.23966 * 7 6 5 35 35 H 1.09009 * 109.53493 * 179.13949 * 7 6 5 36 36 H 0.97000 * 119.99972 * 335.31742 * 10 8 2 37 37 H 1.08999 * 109.47278 * 59.99800 * 13 11 10 38 38 H 1.09002 * 109.46837 * 300.00183 * 13 11 10 39 39 H 0.97000 * 119.99219 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4419 0.0000 4 6 2.0410 -0.7234 -1.2481 5 7 3.5093 -0.7420 -1.2380 6 6 4.0230 -1.4729 -0.0725 7 6 3.5712 -0.7719 1.2106 8 6 2.0413 -0.7238 1.2487 9 1 1.6453 -1.7391 1.2700 10 7 1.6038 -0.0024 2.4464 11 6 1.4829 -0.6548 3.6195 12 8 1.7368 -1.8389 3.6838 13 6 1.0323 0.0872 4.8514 14 16 0.9706 -1.0545 6.2545 15 6 0.4315 0.0458 7.5207 16 1 0.2478 1.0850 7.2910 17 6 0.2369 -0.4243 8.8121 18 7 0.4603 -1.6910 9.0920 19 14 -0.3422 0.7405 10.1528 20 1 -0.5188 2.1009 9.5843 21 1 -1.6362 0.2605 10.7006 22 1 0.6689 0.7862 11.2395 23 1 -0.3633 0.5123 0.8909 24 1 -0.3633 0.5153 -0.8890 25 1 -0.3633 -1.0276 -0.0017 26 1 3.1316 1.4408 -0.0018 27 1 1.6773 1.9567 -0.8891 28 1 1.6803 1.9557 0.8909 29 1 1.6905 -0.2022 -2.1389 30 1 1.6648 -1.7464 -1.2542 31 1 3.8830 0.1947 -1.2709 32 1 5.1121 -1.4961 -0.1095 33 1 3.6374 -2.4923 -0.0845 34 1 3.9678 0.2432 1.2297 35 1 3.9396 -1.3229 2.0761 36 1 1.4010 0.9448 2.3950 37 1 0.0412 0.5072 4.6804 38 1 1.7352 0.8915 5.0685 39 1 0.3246 -2.0194 9.9946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700972732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:08 Heat of formation + Delta-G solvation = -75.291969 kcal Electronic energy + Delta-G solvation = -19260.095507 eV Core-core repulsion = 16326.997831 eV Total energy + Delta-G solvation = -2933.097676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59929 -39.74901 -35.72024 -34.60688 -34.28184 -32.08797 -30.10271 -28.35136 -27.72155 -27.23090 -24.51508 -22.78007 -21.67667 -20.20422 -19.62821 -18.00902 -17.64813 -16.90228 -16.64057 -16.27522 -15.98452 -15.85057 -15.34128 -15.16640 -14.74515 -14.61027 -14.16634 -14.03651 -13.52854 -13.18692 -13.12158 -12.93107 -12.88802 -12.81605 -12.59978 -12.52392 -12.45897 -12.01112 -11.73719 -11.54021 -11.35901 -11.17628 -11.01001 -10.30122 -10.08866 -9.35114 -8.69280 -8.36782 -6.15204 1.25035 1.40245 1.45495 1.56846 1.58576 2.23393 2.26848 2.97567 3.28713 3.36595 3.53162 3.69911 3.83209 3.93333 4.07693 4.21893 4.24733 4.31843 4.45385 4.47106 4.48495 4.68862 4.76649 4.86230 4.91498 4.96076 4.99112 5.01625 5.12933 5.18697 5.31721 5.37706 5.39939 5.49614 6.01907 6.17934 6.47126 6.51050 7.04602 7.22275 8.72772 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040492 B = 0.003722 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.323467 B = 7520.348563 C = 7806.225797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C -0.146 4.146 4 C 0.072 3.928 5 N -0.682 5.682 6 C 0.065 3.935 7 C -0.164 4.164 8 C 0.157 3.843 9 H 0.056 0.944 10 N -0.706 5.706 11 C 0.534 3.466 12 O -0.565 6.565 13 C -0.130 4.130 14 S -0.150 6.150 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.014 3.986 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.273 1.273 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.350 0.650 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.411 0.589 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.106 9.507 -22.033 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 C -0.203 4.203 4 C -0.058 4.058 5 N -0.311 5.311 6 C -0.065 4.065 7 C -0.205 4.205 8 C 0.052 3.948 9 H 0.074 0.926 10 N -0.360 5.360 11 C 0.320 3.680 12 O -0.443 6.443 13 C -0.281 4.281 14 S 0.077 5.923 15 C -0.695 4.695 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.180 1.180 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.083 0.917 31 H 0.170 0.830 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.062 0.938 36 H 0.249 0.751 37 H 0.126 0.874 38 H 0.126 0.874 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.589 6.876 -22.273 23.585 hybrid contribution -0.895 2.352 1.993 3.210 sum 2.694 9.228 -20.280 22.443 Atomic orbital electron populations 1.21807 0.93434 1.01776 1.02698 1.21509 0.96919 0.97120 0.94517 1.21962 1.01457 0.93718 1.03175 1.22120 0.87364 1.00421 0.95923 1.60669 1.07490 1.22256 1.40715 1.21928 1.00710 0.97464 0.86408 1.22665 0.95524 1.02275 0.99988 1.21015 0.94116 0.95686 0.83971 0.92562 1.45924 1.68935 1.13688 1.07472 1.20075 0.76351 0.86893 0.84731 1.90685 1.50683 1.17347 1.85560 1.23372 1.05584 1.03046 0.96079 1.85582 1.88805 1.16489 1.01436 1.23241 1.52500 0.97589 0.96167 0.89962 1.26138 0.94766 0.97460 1.00733 1.70194 1.47054 1.15874 1.21662 0.84892 0.77911 0.78124 0.76933 1.18024 1.19871 1.19875 0.93038 0.90141 0.93668 0.91849 0.90101 0.92344 0.88124 0.91707 0.82996 0.89279 0.91891 0.90110 0.93808 0.75056 0.87426 0.87430 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.35 71.98 0.60 -1.55 16 2 C -0.10 -1.47 0.57 -52.13 -0.03 -1.50 16 3 C -0.15 -1.59 7.67 71.98 0.55 -1.04 16 4 C 0.07 1.00 5.34 86.33 0.46 1.46 16 5 N -0.68 -9.86 6.80 -514.00 -3.49 -13.36 16 6 C 0.07 1.17 6.55 86.32 0.57 1.74 16 7 C -0.16 -3.57 5.30 30.65 0.16 -3.40 16 8 C 0.16 3.62 1.63 45.07 0.07 3.69 16 9 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 10 N -0.71 -18.21 4.37 -442.16 -1.93 -20.14 16 11 C 0.53 20.03 7.81 87.66 0.68 20.72 16 12 O -0.56 -26.64 15.53 -3.02 -0.05 -26.69 16 13 C -0.13 -5.21 6.16 71.23 0.44 -4.77 16 14 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 15 C -0.55 -31.46 9.50 67.96 0.65 -30.81 16 16 H 0.08 4.40 7.80 -2.91 -0.02 4.37 16 17 C 0.01 0.79 5.49 84.86 0.47 1.25 16 18 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 19 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H 0.05 0.88 7.62 -2.38 -0.02 0.86 16 24 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.66 5.12 -2.39 -0.01 0.65 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.65 6.41 -2.39 -0.02 0.64 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.35 3.96 7.14 -89.69 -0.64 3.32 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.49 6.58 -2.39 -0.02 1.48 16 35 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.41 8.05 6.66 -92.71 -0.62 7.43 16 37 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 38 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 39 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -74.74 320.39 0.09 -74.64 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.20 Total: 19.64 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 4.62 Total: -14.22 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -5.14 Total: -89.48 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.69 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -74.74 0.09 -74.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700972732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.650 kcal (2) G-P(sol) polarization free energy of solvation -74.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds