Wall clock time and date at job start Mon Mar 30 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46890 * 2 1 4 4 C 1.34776 * 120.00028 * 269.99929 * 3 2 1 5 5 O 1.21281 * 119.99861 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99804 * 0.02562 * 4 3 2 7 7 S 1.81002 * 109.46738 * 179.97438 * 6 4 3 8 8 C 1.76203 * 99.99917 * 180.02562 * 7 6 4 9 9 H 1.08004 * 119.99719 * 0.02562 * 8 7 6 10 10 C 1.38800 * 120.00243 * 180.02562 * 8 7 6 11 11 N 1.31627 * 120.00103 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99742 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46936 * 90.00297 * 12 10 8 14 14 H 1.48500 * 109.46957 * 210.00176 * 12 10 8 15 15 H 1.48492 * 109.47406 * 330.00327 * 12 10 8 16 16 C 1.46501 * 119.99820 * 90.00520 * 3 2 1 17 17 C 1.53118 * 109.52445 * 119.99747 * 16 3 2 18 18 C 1.53034 * 109.28068 * 177.55526 * 17 16 3 19 19 N 1.46848 * 109.52504 * 300.82023 * 18 17 16 20 20 C 1.46847 * 111.19556 * 61.74015 * 19 18 17 21 21 C 1.53044 * 109.52516 * 298.25761 * 20 19 18 22 22 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47120 * 299.99769 * 1 2 3 24 24 H 1.08995 * 109.47353 * 59.99813 * 1 2 3 25 25 H 1.08995 * 109.47094 * 239.99897 * 2 1 3 26 26 H 1.08999 * 109.46894 * 120.00280 * 2 1 3 27 27 H 1.08998 * 109.47328 * 299.99956 * 6 4 3 28 28 H 1.08991 * 109.46858 * 60.00354 * 6 4 3 29 29 H 0.96999 * 119.99909 * 179.97438 * 11 10 8 30 30 H 1.08992 * 109.57481 * 359.83628 * 16 3 2 31 31 H 1.09001 * 109.50624 * 57.61548 * 17 16 3 32 32 H 1.08998 * 109.50047 * 297.50005 * 17 16 3 33 33 H 1.09000 * 109.46341 * 180.80474 * 18 17 16 34 34 H 1.08999 * 109.46274 * 60.83372 * 18 17 16 35 35 H 1.00901 * 111.00066 * 185.83397 * 19 18 17 36 36 H 1.08999 * 109.46628 * 58.27319 * 20 19 18 37 37 H 1.09003 * 109.46158 * 178.24166 * 20 19 18 38 38 H 1.08996 * 109.50067 * 299.23984 * 21 20 19 39 39 H 1.08993 * 109.50192 * 179.12052 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1599 -1.1672 6 6 1.9912 1.3063 -2.4723 7 16 2.3827 2.4155 -3.8480 8 6 2.0080 1.3599 -5.2082 9 1 1.6524 0.3557 -5.0305 10 6 2.1700 1.8189 -6.5081 11 7 1.8897 1.0305 -7.5242 12 14 2.7845 3.5560 -6.8154 13 1 4.2673 3.5492 -6.8973 14 1 2.2205 4.0618 -8.0926 15 1 2.3544 4.4377 -5.7007 16 6 2.2625 2.0718 1.2688 17 6 3.7344 2.4855 1.3511 18 6 3.9698 3.2594 2.6502 19 7 3.1067 4.4471 2.6772 20 6 1.6871 4.0727 2.6469 21 6 1.3835 3.3231 1.3476 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.6210 0.4186 -2.5302 28 1 0.9432 1.0126 -2.5298 29 1 2.0026 1.3514 -8.4325 30 1 2.0242 1.4063 2.0984 31 1 3.9824 3.1196 0.4998 32 1 4.3638 1.5957 1.3383 33 1 5.0138 3.5679 2.7051 34 1 3.7349 2.6203 3.5013 35 1 3.3113 5.0246 3.4790 36 1 1.4628 3.4297 3.4980 37 1 1.0731 4.9718 2.6995 38 1 1.5945 3.9703 0.4964 39 1 0.3334 3.0316 1.3326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:32 Heat of formation + Delta-G solvation = -38.577872 kcal Electronic energy + Delta-G solvation = -19512.897771 eV Core-core repulsion = 16581.392138 eV Total energy + Delta-G solvation = -2931.505633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.23696 -37.75361 -35.65635 -32.41620 -32.21626 -30.87064 -29.91422 -28.52464 -25.59376 -23.66250 -23.38479 -22.97102 -20.26891 -18.89366 -17.52114 -16.97761 -16.28545 -16.01114 -15.22498 -14.94112 -14.65925 -14.09946 -13.85202 -13.67431 -13.61020 -13.50819 -13.24301 -12.79655 -12.68291 -12.32807 -12.14664 -11.96708 -11.49936 -11.26782 -11.22568 -11.08258 -10.97622 -10.62229 -10.57330 -10.47526 -9.82419 -9.19039 -8.97891 -8.54798 -8.51559 -8.44556 -6.88256 -6.26813 -3.97885 2.75461 3.01207 3.22037 3.35401 3.53209 3.62266 4.07692 4.35420 4.55800 4.78112 4.80640 4.82914 4.99841 5.12043 5.14421 5.14970 5.22389 5.31136 5.34720 5.36226 5.43629 5.50130 5.70791 5.71447 5.73047 5.85353 5.90708 5.98365 6.01416 6.18908 6.37407 6.41038 6.83059 6.90020 7.23116 7.56946 7.96300 8.43533 8.54912 9.19752 10.82488 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.004936 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.728814 B = 5670.765609 C = 6341.998955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.105 3.895 3 N -0.617 5.617 4 C 0.532 3.468 5 O -0.507 6.507 6 C -0.122 4.122 7 S -0.142 6.142 8 C -0.520 4.520 9 H 0.087 0.913 10 C 0.096 3.904 11 N -0.881 5.881 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.275 1.275 15 H -0.235 1.235 16 C 0.158 3.842 17 C -0.138 4.138 18 C 0.066 3.934 19 N -0.687 5.687 20 C 0.066 3.934 21 C -0.137 4.137 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.270 0.730 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.024 0.976 35 H 0.340 0.660 36 H 0.024 0.976 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.587 -0.370 22.152 22.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.018 4.018 3 N -0.352 5.352 4 C 0.320 3.680 5 O -0.381 6.381 6 C -0.272 4.272 7 S 0.084 5.916 8 C -0.668 4.668 9 H 0.105 0.895 10 C -0.112 4.112 11 N -0.518 5.518 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.159 1.159 16 C 0.054 3.946 17 C -0.177 4.177 18 C -0.064 4.064 19 N -0.319 5.319 20 C -0.064 4.064 21 C -0.176 4.176 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.118 0.882 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.158 0.842 36 H 0.042 0.958 37 H 0.093 0.907 38 H 0.118 0.882 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.034 1.376 21.265 21.310 hybrid contribution -0.459 -1.283 0.525 1.460 sum -0.425 0.093 21.790 21.794 Atomic orbital electron populations 1.22234 0.95945 1.02222 1.02678 1.21576 0.94529 0.82500 1.03197 1.48081 1.67542 1.14128 1.05449 1.20234 0.76719 0.86576 0.84469 1.90657 1.43568 1.17231 1.86649 1.23360 1.05202 1.03249 0.95437 1.84781 1.88079 1.21257 0.97492 1.22321 1.51583 1.01938 0.90960 0.89489 1.24702 0.93774 0.97898 0.94863 1.69939 1.46730 1.36283 0.98867 0.86740 0.80255 0.85098 0.79803 1.19228 1.19991 1.15885 1.20960 0.95289 0.93355 0.84947 1.22062 0.95595 1.00370 0.99636 1.21839 0.97292 0.90917 0.96327 1.60191 1.04102 1.19764 1.47810 1.21846 0.89146 0.99050 0.96358 1.22062 0.98516 0.97402 0.99605 0.91565 0.92602 0.91866 0.89871 0.90751 0.88815 0.88693 0.91979 0.90682 0.88228 0.91888 0.90672 0.95740 0.84240 0.95751 0.90694 0.88217 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 10.24 37.16 0.38 -1.33 16 2 C 0.11 1.12 5.90 -4.04 -0.02 1.09 16 3 N -0.62 -8.41 2.43 -165.97 -0.40 -8.82 16 4 C 0.53 9.62 7.11 -10.98 -0.08 9.54 16 5 O -0.51 -10.74 12.02 5.56 0.07 -10.68 16 6 C -0.12 -2.41 4.71 36.01 0.17 -2.24 16 7 S -0.14 -3.64 18.55 -107.50 -1.99 -5.64 16 8 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 9 H 0.09 2.63 8.03 -52.48 -0.42 2.20 16 10 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 11 N -0.88 -26.73 13.97 55.49 0.78 -25.96 16 12 Si 0.86 21.98 27.74 -169.99 -4.71 17.27 16 13 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 16 C 0.16 1.93 2.62 -67.81 -0.18 1.75 16 17 C -0.14 -1.75 5.34 -26.65 -0.14 -1.90 16 18 C 0.07 0.68 6.55 -3.83 -0.03 0.66 16 19 N -0.69 -7.42 6.85 -113.81 -0.78 -8.20 16 20 C 0.07 0.68 6.55 -3.83 -0.03 0.66 16 21 C -0.14 -1.75 5.33 -26.65 -0.14 -1.89 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 24 H 0.06 0.75 7.22 -51.93 -0.37 0.37 16 25 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 26 H 0.07 0.62 7.92 -51.93 -0.41 0.21 16 27 H 0.09 1.74 7.40 -51.92 -0.38 1.36 16 28 H 0.09 1.77 7.18 -51.92 -0.37 1.40 16 29 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.08 0.76 7.80 -51.93 -0.41 0.35 16 31 H 0.10 1.66 6.12 -51.93 -0.32 1.34 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.34 2.84 8.90 -39.29 -0.35 2.50 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.67 6.09 -51.93 -0.32 1.35 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -33.01 318.94 -8.32 -41.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.23 Total: 1.58 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: 0.15 Total: -5.70 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.41 Total: -42.97 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Atomic # 16 Polarization: -3.64 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.01 -8.32 -41.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.748 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds