Wall clock time and date at job start Mon Mar 30 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46497 * 109.46890 * 2 1 4 4 C 1.34776 * 120.00028 * 269.99929 * 3 2 1 5 5 O 1.21281 * 119.99861 * 180.02562 * 4 3 2 6 6 C 1.50701 * 119.99804 * 0.02562 * 4 3 2 7 7 S 1.81002 * 109.46738 * 179.97438 * 6 4 3 8 8 C 1.76203 * 99.99917 * 180.02562 * 7 6 4 9 9 H 1.08004 * 119.99719 * 0.02562 * 8 7 6 10 10 C 1.38800 * 120.00243 * 180.02562 * 8 7 6 11 11 N 1.31627 * 120.00103 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 119.99742 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.46936 * 90.00297 * 12 10 8 14 14 H 1.48500 * 109.46957 * 210.00176 * 12 10 8 15 15 H 1.48492 * 109.47406 * 330.00327 * 12 10 8 16 16 C 1.46501 * 119.99820 * 90.00520 * 3 2 1 17 17 C 1.53118 * 109.52445 * 119.99747 * 16 3 2 18 18 C 1.53034 * 109.28068 * 177.55526 * 17 16 3 19 19 N 1.46848 * 109.52504 * 300.82023 * 18 17 16 20 20 C 1.46847 * 111.19556 * 61.74015 * 19 18 17 21 21 C 1.53044 * 109.52516 * 298.25761 * 20 19 18 22 22 H 1.08997 * 109.47548 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47120 * 299.99769 * 1 2 3 24 24 H 1.08995 * 109.47353 * 59.99813 * 1 2 3 25 25 H 1.08995 * 109.47094 * 239.99897 * 2 1 3 26 26 H 1.08999 * 109.46894 * 120.00280 * 2 1 3 27 27 H 1.08998 * 109.47328 * 299.99956 * 6 4 3 28 28 H 1.08991 * 109.46858 * 60.00354 * 6 4 3 29 29 H 0.96999 * 119.99909 * 179.97438 * 11 10 8 30 30 H 1.08992 * 109.57481 * 359.83628 * 16 3 2 31 31 H 1.09001 * 109.50624 * 57.61548 * 17 16 3 32 32 H 1.08998 * 109.50047 * 297.50005 * 17 16 3 33 33 H 1.09000 * 109.46341 * 180.80474 * 18 17 16 34 34 H 1.08999 * 109.46274 * 60.83372 * 18 17 16 35 35 H 1.00901 * 111.00066 * 185.83397 * 19 18 17 36 36 H 1.08999 * 109.46628 * 58.27319 * 20 19 18 37 37 H 1.09003 * 109.46158 * 178.24166 * 20 19 18 38 38 H 1.08996 * 109.50067 * 299.23984 * 21 20 19 39 39 H 1.08993 * 109.50192 * 179.12052 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1599 -1.1672 6 6 1.9912 1.3063 -2.4723 7 16 2.3827 2.4155 -3.8480 8 6 2.0080 1.3599 -5.2082 9 1 1.6524 0.3557 -5.0305 10 6 2.1700 1.8189 -6.5081 11 7 1.8897 1.0305 -7.5242 12 14 2.7845 3.5560 -6.8154 13 1 4.2673 3.5492 -6.8973 14 1 2.2205 4.0618 -8.0926 15 1 2.3544 4.4377 -5.7007 16 6 2.2625 2.0718 1.2688 17 6 3.7344 2.4855 1.3511 18 6 3.9698 3.2594 2.6502 19 7 3.1067 4.4471 2.6772 20 6 1.6871 4.0727 2.6469 21 6 1.3835 3.3231 1.3476 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.6210 0.4186 -2.5302 28 1 0.9432 1.0126 -2.5298 29 1 2.0026 1.3514 -8.4325 30 1 2.0242 1.4063 2.0984 31 1 3.9824 3.1196 0.4998 32 1 4.3638 1.5957 1.3383 33 1 5.0138 3.5679 2.7051 34 1 3.7349 2.6203 3.5013 35 1 3.3113 5.0246 3.4790 36 1 1.4628 3.4297 3.4980 37 1 1.0731 4.9718 2.6995 38 1 1.5945 3.9703 0.4964 39 1 0.3334 3.0316 1.3326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011676.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:32 Heat of formation + Delta-G solvation = -62.028217 kcal Electronic energy + Delta-G solvation = -19513.914655 eV Core-core repulsion = 16581.392138 eV Total energy + Delta-G solvation = -2932.522517 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42945 -38.80024 -36.81279 -34.68043 -33.17899 -31.75393 -31.14958 -29.77779 -27.85649 -24.62947 -24.37768 -23.86890 -21.22072 -20.41990 -19.32640 -18.02910 -17.50799 -17.17261 -17.02316 -16.54006 -15.71930 -15.53359 -15.02350 -14.83147 -14.79668 -14.73614 -14.60281 -14.16520 -13.77598 -13.45296 -13.35741 -13.13068 -13.03361 -12.94528 -12.63328 -12.46855 -12.11538 -12.00698 -11.87109 -11.57545 -11.41633 -11.17718 -10.57816 -10.51813 -9.64933 -9.30940 -8.99991 -8.52427 -6.22887 0.98252 1.30183 1.45882 1.54199 1.59789 2.09907 2.24456 2.68744 2.85956 3.31896 3.51021 3.88690 3.95449 3.98914 4.13527 4.16765 4.28334 4.35727 4.42196 4.43338 4.48416 4.57323 4.61291 4.67133 4.87743 4.92232 4.95940 4.96956 5.10443 5.33913 5.35218 5.35769 5.69982 5.77544 6.10048 6.12402 6.34568 6.58452 6.93053 7.19474 8.60152 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.004936 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.728814 B = 5670.765609 C = 6341.998955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.532 3.468 5 O -0.544 6.544 6 C -0.106 4.106 7 S -0.176 6.176 8 C -0.528 4.528 9 H 0.061 0.939 10 C 0.048 3.952 11 N -0.917 5.917 12 Si 0.913 3.087 13 H -0.262 1.262 14 H -0.258 1.258 15 H -0.239 1.239 16 C 0.156 3.844 17 C -0.137 4.137 18 C 0.071 3.929 19 N -0.709 5.709 20 C 0.071 3.929 21 C -0.136 4.136 22 H 0.087 0.913 23 H 0.065 0.935 24 H 0.036 0.964 25 H 0.077 0.923 26 H 0.111 0.889 27 H 0.106 0.894 28 H 0.104 0.896 29 H 0.277 0.723 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.354 0.646 36 H 0.050 0.950 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -0.813 24.927 24.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.025 4.025 3 N -0.336 5.336 4 C 0.319 3.681 5 O -0.422 6.422 6 C -0.257 4.257 7 S 0.051 5.949 8 C -0.676 4.676 9 H 0.079 0.921 10 C -0.157 4.157 11 N -0.555 5.555 12 Si 0.735 3.265 13 H -0.187 1.187 14 H -0.182 1.182 15 H -0.163 1.163 16 C 0.053 3.947 17 C -0.176 4.176 18 C -0.059 4.059 19 N -0.342 5.342 20 C -0.059 4.059 21 C -0.174 4.174 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.055 0.945 25 H 0.096 0.904 26 H 0.129 0.871 27 H 0.124 0.876 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.174 0.826 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.058 0.904 24.075 24.092 hybrid contribution -0.473 -1.257 -0.219 1.361 sum -0.530 -0.353 23.856 23.865 Atomic orbital electron populations 1.22194 0.95181 1.03382 1.01879 1.21891 0.95119 0.80686 1.04792 1.48095 1.65829 1.15122 1.04599 1.19922 0.77010 0.86076 0.85098 1.90663 1.45613 1.18740 1.87183 1.23332 1.05958 1.02250 0.94185 1.84703 1.88365 1.22939 0.98884 1.22451 1.51184 1.01408 0.92560 0.92107 1.25523 0.93934 1.01538 0.94713 1.70011 1.47799 1.38133 0.99529 0.85888 0.79949 0.80600 0.80065 1.18681 1.18197 1.16273 1.21199 0.94933 0.93770 0.84784 1.22004 0.96067 1.00209 0.99294 1.21797 0.97529 0.90931 0.95641 1.60119 1.04476 1.20552 1.49095 1.21798 0.89025 0.99436 0.95648 1.21992 0.99008 0.97178 0.99263 0.89452 0.91583 0.94455 0.90414 0.87101 0.87606 0.87740 0.91343 0.86906 0.92787 0.91018 0.90295 0.93126 0.82611 0.93150 0.90374 0.92811 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.88 10.24 71.98 0.74 -2.14 16 2 C 0.10 1.77 5.90 86.38 0.51 2.28 16 3 N -0.60 -15.42 2.43 -797.41 -1.94 -17.35 16 4 C 0.53 19.22 7.11 87.66 0.62 19.84 16 5 O -0.54 -23.74 12.02 -3.03 -0.04 -23.78 16 6 C -0.11 -4.22 4.71 71.24 0.34 -3.89 16 7 S -0.18 -9.13 18.55 -56.49 -1.05 -10.18 16 8 C -0.53 -31.34 10.04 67.95 0.68 -30.65 16 9 H 0.06 3.80 8.03 -2.91 -0.02 3.77 16 10 C 0.05 2.88 5.50 84.86 0.47 3.35 16 11 N -0.92 -56.37 13.97 21.65 0.30 -56.07 16 12 Si 0.91 45.83 27.74 68.60 1.90 47.73 16 13 H -0.26 -12.84 7.11 99.48 0.71 -12.13 16 14 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 15 H -0.24 -12.05 6.74 99.48 0.67 -11.38 16 16 C 0.16 3.41 2.62 45.07 0.12 3.52 16 17 C -0.14 -3.27 5.34 30.65 0.16 -3.11 16 18 C 0.07 1.28 6.55 86.32 0.57 1.84 16 19 N -0.71 -13.92 6.85 -513.99 -3.52 -17.44 16 20 C 0.07 1.29 6.55 86.33 0.57 1.85 16 21 C -0.14 -3.27 5.33 30.65 0.16 -3.11 16 22 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 24 H 0.04 0.83 7.22 -2.39 -0.02 0.81 16 25 H 0.08 1.53 6.44 -2.39 -0.02 1.52 16 26 H 0.11 1.30 7.92 -2.39 -0.02 1.28 16 27 H 0.11 3.92 7.40 -2.40 -0.02 3.90 16 28 H 0.10 3.93 7.18 -2.40 -0.02 3.91 16 29 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.11 1.70 7.80 -2.39 -0.02 1.68 16 31 H 0.05 1.83 6.12 -2.39 -0.01 1.81 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.35 5.11 8.90 -89.69 -0.80 4.31 16 36 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.05 1.84 6.09 -2.39 -0.01 1.82 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -74.05 318.94 0.80 -73.25 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.20 Total: 14.06 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.93 Total: -10.22 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -5.15 Total: -90.86 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.04 Total: -23.78 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.90 Total: 47.73 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.05 Total: -10.18 kcal Total: -74.05 0.80 -73.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011676.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.220 kcal (2) G-P(sol) polarization free energy of solvation -74.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds