Wall clock time and date at job start Mon Mar 30 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08995 * 109.46268 * 295.02868 * 4 3 2 6 6 C 1.53039 * 109.46502 * 175.05100 * 4 3 2 7 7 C 1.53117 * 109.28058 * 180.80570 * 6 4 3 8 8 C 1.53125 * 109.15800 * 57.65577 * 7 6 4 9 9 C 1.53031 * 109.28061 * 302.34755 * 8 7 6 10 10 N 1.46853 * 109.52405 * 59.17993 * 9 8 7 11 11 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99750 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99928 * 0.28128 * 11 2 1 14 14 S 1.80999 * 109.46903 * 179.72354 * 13 11 2 15 15 C 1.76200 * 99.99730 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99941 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00384 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47506 * 89.99666 * 19 17 15 21 21 H 1.48498 * 109.47217 * 210.00061 * 19 17 15 22 22 H 1.48502 * 109.46767 * 329.99807 * 19 17 15 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 1.08995 * 109.50617 * 300.75200 * 6 4 3 29 29 H 1.09008 * 109.49878 * 60.86848 * 6 4 3 30 30 H 1.09004 * 109.52385 * 297.75460 * 7 6 4 31 31 H 1.08993 * 109.57411 * 177.59673 * 7 6 4 32 32 H 1.09000 * 109.50025 * 182.40351 * 8 7 6 33 33 H 1.09006 * 109.49520 * 62.29048 * 8 7 6 34 34 H 1.08996 * 109.46235 * 299.16363 * 9 8 7 35 35 H 1.08997 * 109.45970 * 179.19263 * 9 8 7 36 36 H 1.00900 * 110.99932 * 174.16203 * 10 9 8 37 37 H 1.09004 * 109.46965 * 299.72211 * 13 11 2 38 38 H 1.08994 * 109.46990 * 59.72065 * 13 11 2 39 39 H 0.97002 * 120.00288 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.1146 0.9947 -1.9297 6 6 3.1073 3.0936 -1.4442 7 6 3.3423 3.5400 -2.8898 8 6 2.0058 3.5472 -3.6371 9 6 1.3829 2.1509 -3.5719 10 7 1.1775 1.7702 -2.1685 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 -0.0053 14 16 2.5618 -3.8479 -0.0113 15 6 1.4418 -5.2081 -0.0166 16 1 0.3765 -5.0305 -0.0160 17 6 1.9286 -6.5079 -0.0226 18 7 3.2270 -6.7245 -0.0249 19 14 0.7412 -7.9500 -0.0290 20 1 0.4262 -8.3258 -1.4307 21 1 1.3627 -9.1060 0.6656 22 1 -0.5093 -7.5646 0.6731 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 2.4518 3.8072 -0.9449 29 1 4.0611 3.0454 -0.9186 30 1 4.0287 2.8480 -3.3778 31 1 3.7694 4.5428 -2.8975 32 1 2.1726 3.8231 -4.6784 33 1 1.3330 4.2680 -3.1723 34 1 2.0500 1.4330 -4.0490 35 1 0.4244 2.1563 -4.0908 36 1 0.6811 0.8944 -2.1004 37 1 0.7588 -2.5340 0.8844 38 1 0.7590 -2.5261 -0.8955 39 1 3.5672 -7.6329 -0.0288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:24 Heat of formation + Delta-G solvation = -43.240132 kcal Electronic energy + Delta-G solvation = -19065.901796 eV Core-core repulsion = 16134.193992 eV Total energy + Delta-G solvation = -2931.707804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.86827 -38.35749 -35.30021 -32.43473 -32.19586 -31.96326 -29.30721 -27.34682 -25.62886 -25.18120 -23.57861 -21.94527 -19.81955 -19.11877 -17.66352 -16.86957 -16.54107 -15.82044 -15.27054 -14.91288 -14.81023 -14.44249 -14.02825 -13.84526 -13.50350 -13.16054 -12.97137 -12.84379 -12.53468 -12.38971 -12.23163 -11.89740 -11.70276 -11.17762 -11.07002 -11.03046 -10.95102 -10.77361 -10.73439 -10.51403 -9.81144 -9.35270 -9.07244 -8.66789 -8.40724 -8.23236 -6.50931 -6.22225 -3.92964 2.95637 3.04859 3.21708 3.25980 3.30059 3.61386 4.03478 4.19822 4.65635 4.68872 4.77663 4.86160 5.06332 5.12827 5.17959 5.21380 5.27668 5.35741 5.44218 5.52522 5.57633 5.61420 5.70733 5.73311 5.76939 5.81093 5.84012 5.91409 5.95383 6.03018 6.12808 6.21774 6.66509 6.91469 7.23370 7.55559 7.59098 8.34501 8.56031 9.23027 10.85196 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.003719 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.139387 B = 7527.023801 C = 7594.137317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.625 5.625 3 C 0.124 3.876 4 C 0.070 3.930 5 H 0.046 0.954 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.115 4.115 9 C 0.056 3.944 10 N -0.685 5.685 11 C 0.530 3.470 12 O -0.516 6.516 13 C -0.150 4.150 14 S -0.063 6.063 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.029 0.971 35 H 0.072 0.928 36 H 0.344 0.656 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 19.917 -4.017 21.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.361 5.361 3 C 0.001 3.999 4 C -0.041 4.041 5 H 0.064 0.936 6 C -0.147 4.147 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.074 4.074 10 N -0.319 5.319 11 C 0.318 3.682 12 O -0.390 6.390 13 C -0.300 4.300 14 S 0.164 5.836 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.073 0.927 24 H 0.100 0.900 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.191 20.408 -3.804 21.178 hybrid contribution -1.888 -1.802 -0.407 2.642 sum -6.079 18.606 -4.211 20.022 Atomic orbital electron populations 1.21916 0.79568 1.03490 1.02052 1.47888 1.06958 1.05625 1.75641 1.21487 0.98177 0.84768 0.95471 1.21913 0.90594 0.96659 0.94942 0.93623 1.21545 1.00329 0.95898 0.96947 1.21563 0.97282 1.01175 0.95881 1.21572 0.96823 0.97039 0.99902 1.21903 0.99986 0.96288 0.89198 1.60499 1.20951 1.38019 1.12434 1.20398 0.87975 0.84687 0.75161 1.90693 1.13759 1.86843 1.47719 1.23552 1.04512 0.97288 1.04668 1.85398 1.08126 0.93393 1.96699 1.22859 0.94299 0.92217 1.58951 0.90952 1.24992 0.95670 0.98376 0.94529 1.70021 1.11749 1.21659 1.46863 0.86169 0.80281 0.80714 0.78349 1.20278 1.20744 1.19668 0.92745 0.90048 0.90877 0.90173 0.89481 0.91133 0.91401 0.92239 0.91861 0.91912 0.91275 0.95241 0.90964 0.83613 0.89247 0.89385 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.10 59.85 0.54 1.31 16 2 N -0.63 -8.74 2.49 -181.57 -0.45 -9.19 16 3 C 0.12 1.54 5.15 -4.04 -0.02 1.52 16 4 C 0.07 0.83 2.79 -67.72 -0.19 0.64 16 5 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 6 C -0.11 -1.06 5.37 -26.65 -0.14 -1.21 16 7 C -0.12 -1.10 6.00 -26.61 -0.16 -1.26 16 8 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 9 C 0.06 0.55 6.55 -3.83 -0.03 0.52 16 10 N -0.69 -7.37 5.90 -106.76 -0.63 -8.00 16 11 C 0.53 10.07 7.69 -10.98 -0.08 9.98 16 12 O -0.52 -11.80 15.44 5.55 0.09 -11.71 16 13 C -0.15 -3.05 4.71 36.01 0.17 -2.88 16 14 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 19 Si 0.92 21.39 29.55 -169.99 -5.02 16.37 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.08 0.71 6.55 -51.93 -0.34 0.37 16 25 H 0.07 0.76 6.43 -51.93 -0.33 0.43 16 26 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 27 H 0.09 1.21 7.42 -51.93 -0.39 0.83 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.34 3.82 6.07 -39.29 -0.24 3.58 16 37 H 0.09 1.70 8.11 -51.91 -0.42 1.28 16 38 H 0.09 1.65 7.40 -51.92 -0.38 1.26 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 324.53 15.07 4.89 4.89 Total: -1.00 -33.23 324.53 -8.77 -42.00 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.29 Total: 0.54 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: 0.13 Total: -5.49 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.35 Total: -42.68 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.23 -8.77 -42.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.239 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds