Wall clock time and date at job start Mon Mar 30 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.53002 * 109.47088 * 269.99330 * 3 2 1 5 5 H 1.08995 * 109.46268 * 295.02868 * 4 3 2 6 6 C 1.53039 * 109.46502 * 175.05100 * 4 3 2 7 7 C 1.53117 * 109.28058 * 180.80570 * 6 4 3 8 8 C 1.53125 * 109.15800 * 57.65577 * 7 6 4 9 9 C 1.53031 * 109.28061 * 302.34755 * 8 7 6 10 10 N 1.46853 * 109.52405 * 59.17993 * 9 8 7 11 11 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 12 12 O 1.21283 * 119.99750 * 180.02562 * 11 2 1 13 13 C 1.50702 * 119.99928 * 0.28128 * 11 2 1 14 14 S 1.80999 * 109.46903 * 179.72354 * 13 11 2 15 15 C 1.76200 * 99.99730 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00351 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00095 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99941 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00384 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47506 * 89.99666 * 19 17 15 21 21 H 1.48498 * 109.47217 * 210.00061 * 19 17 15 22 22 H 1.48502 * 109.46767 * 329.99807 * 19 17 15 23 23 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 24 24 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 25 25 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 26 26 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 27 27 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 28 28 H 1.08995 * 109.50617 * 300.75200 * 6 4 3 29 29 H 1.09008 * 109.49878 * 60.86848 * 6 4 3 30 30 H 1.09004 * 109.52385 * 297.75460 * 7 6 4 31 31 H 1.08993 * 109.57411 * 177.59673 * 7 6 4 32 32 H 1.09000 * 109.50025 * 182.40351 * 8 7 6 33 33 H 1.09006 * 109.49520 * 62.29048 * 8 7 6 34 34 H 1.08996 * 109.46235 * 299.16363 * 9 8 7 35 35 H 1.08997 * 109.45970 * 179.19263 * 9 8 7 36 36 H 1.00900 * 110.99932 * 174.16203 * 10 9 8 37 37 H 1.09004 * 109.46965 * 299.72211 * 13 11 2 38 38 H 1.08994 * 109.46990 * 59.72065 * 13 11 2 39 39 H 0.97002 * 120.00288 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 3.1146 0.9947 -1.9297 6 6 3.1073 3.0936 -1.4442 7 6 3.3423 3.5400 -2.8898 8 6 2.0058 3.5472 -3.6371 9 6 1.3829 2.1509 -3.5719 10 7 1.1775 1.7702 -2.1685 11 6 2.1390 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3855 -2.4723 -0.0053 14 16 2.5618 -3.8479 -0.0113 15 6 1.4418 -5.2081 -0.0166 16 1 0.3765 -5.0305 -0.0160 17 6 1.9286 -6.5079 -0.0226 18 7 3.2270 -6.7245 -0.0249 19 14 0.7412 -7.9500 -0.0290 20 1 0.4262 -8.3258 -1.4307 21 1 1.3627 -9.1060 0.6656 22 1 -0.5093 -7.5646 0.6731 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3632 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5137 27 1 3.1499 1.1385 0.5139 28 1 2.4518 3.8072 -0.9449 29 1 4.0611 3.0454 -0.9186 30 1 4.0287 2.8480 -3.3778 31 1 3.7694 4.5428 -2.8975 32 1 2.1726 3.8231 -4.6784 33 1 1.3330 4.2680 -3.1723 34 1 2.0500 1.4330 -4.0490 35 1 0.4244 2.1563 -4.0908 36 1 0.6811 0.8944 -2.1004 37 1 0.7588 -2.5340 0.8844 38 1 0.7590 -2.5261 -0.8955 39 1 3.5672 -7.6329 -0.0288 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011752.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:54:24 Heat of formation + Delta-G solvation = -65.829827 kcal Electronic energy + Delta-G solvation = -19066.881359 eV Core-core repulsion = 16134.193992 eV Total energy + Delta-G solvation = -2932.687367 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.11779 -39.41217 -36.55168 -34.59607 -33.16247 -32.82386 -30.74069 -28.34186 -27.70377 -26.37223 -24.40276 -22.89727 -20.67413 -20.56286 -19.52646 -18.04132 -17.75861 -17.13501 -16.88728 -16.51773 -15.90240 -15.84288 -15.28538 -14.79866 -14.54115 -14.50203 -14.38668 -13.93448 -13.69937 -13.53962 -13.24215 -13.17868 -13.00648 -12.88987 -12.75614 -12.55998 -12.06454 -11.72878 -11.68802 -11.58052 -11.29218 -11.15232 -10.87610 -10.28208 -9.73461 -9.45094 -8.69183 -8.35658 -6.14475 1.25052 1.42000 1.45528 1.55178 1.56240 2.12050 2.26708 2.98552 3.14807 3.25462 3.71453 3.82805 3.89101 4.01391 4.15214 4.20352 4.31995 4.34869 4.41605 4.47222 4.53412 4.61826 4.72092 4.77840 4.84692 4.89065 4.96610 5.01167 5.08392 5.19907 5.25217 5.40502 5.45454 5.55668 6.00374 6.18568 6.25901 6.35803 7.05455 7.12824 8.73651 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034132 B = 0.003719 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.139387 B = 7527.023801 C = 7594.137317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.609 5.609 3 C 0.124 3.876 4 C 0.076 3.924 5 H 0.004 0.996 6 C -0.106 4.106 7 C -0.123 4.123 8 C -0.111 4.111 9 C 0.051 3.949 10 N -0.676 5.676 11 C 0.527 3.473 12 O -0.566 6.566 13 C -0.122 4.122 14 S -0.156 6.156 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.268 1.268 21 H -0.278 1.278 22 H -0.257 1.257 23 H 0.072 0.928 24 H 0.105 0.895 25 H 0.075 0.925 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.010 0.990 35 H 0.088 0.912 36 H 0.341 0.659 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 21.353 -4.108 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.343 5.343 3 C 0.001 3.999 4 C -0.036 4.036 5 H 0.022 0.978 6 C -0.144 4.144 7 C -0.160 4.160 8 C -0.149 4.149 9 C -0.078 4.078 10 N -0.309 5.309 11 C 0.315 3.685 12 O -0.445 6.445 13 C -0.274 4.274 14 S 0.071 5.929 15 C -0.693 4.693 16 H 0.101 0.899 17 C -0.191 4.191 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.193 1.193 21 H -0.203 1.203 22 H -0.181 1.181 23 H 0.090 0.910 24 H 0.124 0.876 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.107 0.893 36 H 0.160 0.840 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.153 21.896 -3.898 23.363 hybrid contribution -1.018 -2.100 -0.396 2.367 sum -8.171 19.796 -4.294 21.843 Atomic orbital electron populations 1.22213 0.76794 1.04887 1.03633 1.47869 1.08579 1.04575 1.73249 1.21643 0.97814 0.84396 0.96042 1.21811 0.90563 0.96972 0.94217 0.97812 1.21540 1.00389 0.94707 0.97753 1.21588 0.97523 1.01690 0.95237 1.21560 0.96366 0.96173 1.00755 1.22024 1.00570 0.96688 0.88549 1.60583 1.19823 1.37559 1.12941 1.20217 0.87310 0.85637 0.75347 1.90677 1.15760 1.87531 1.50512 1.23369 1.02655 0.94974 1.06352 1.85603 1.12797 0.97422 1.97033 1.23194 0.94614 0.92600 1.58916 0.89857 1.26145 0.97605 1.01716 0.93681 1.70191 1.14169 1.22481 1.48007 0.84940 0.77897 0.76242 0.78820 1.19284 1.20328 1.18053 0.90979 0.87614 0.90605 0.86857 0.91482 0.89520 0.91569 0.93842 0.90085 0.90638 0.90387 0.97185 0.89346 0.83964 0.87458 0.87451 0.91998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.18 9.10 127.77 1.16 2.34 16 2 N -0.61 -16.21 2.49 -846.74 -2.11 -18.32 16 3 C 0.12 2.92 5.15 86.38 0.44 3.36 16 4 C 0.08 1.75 2.79 44.94 0.13 1.88 16 5 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 6 C -0.11 -1.92 5.37 30.65 0.16 -1.76 16 7 C -0.12 -2.05 6.00 30.68 0.18 -1.87 16 8 C -0.11 -1.66 6.09 30.65 0.19 -1.48 16 9 C 0.05 0.93 6.55 86.32 0.57 1.49 16 10 N -0.68 -13.30 5.90 -491.67 -2.90 -16.20 16 11 C 0.53 20.16 7.69 87.66 0.67 20.83 16 12 O -0.57 -27.05 15.44 -3.04 -0.05 -27.09 16 13 C -0.12 -4.94 4.71 71.24 0.34 -4.61 16 14 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 15 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 16 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 17 C 0.01 0.75 5.49 84.86 0.47 1.22 16 18 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 19 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 20 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 23 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.11 1.42 6.55 -2.39 -0.02 1.41 16 25 H 0.08 1.35 6.43 -2.39 -0.02 1.33 16 26 H 0.11 1.96 8.07 -2.39 -0.02 1.95 16 27 H 0.07 1.89 7.42 -2.38 -0.02 1.87 16 28 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.34 6.91 6.07 -89.69 -0.54 6.37 16 37 H 0.11 3.94 8.11 -2.39 -0.02 3.92 16 38 H 0.11 3.90 7.40 -2.40 -0.02 3.88 16 39 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -75.20 324.53 1.53 -73.67 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.48 Total: 17.62 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 4.95 Total: -9.24 kcal Atomic # 7 Polarization: -85.92 SS G_CDS: -4.72 Total: -90.65 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -75.20 1.53 -73.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011752.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.838 kcal (2) G-P(sol) polarization free energy of solvation -75.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds