Wall clock time and date at job start Mon Mar 30 2020 04:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 119.99464 * 2 1 4 4 H 1.48506 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47160 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47263 * 60.00088 * 3 2 1 7 7 C 1.38797 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99617 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47062 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00017 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99910 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99735 * 179.97438 * 13 11 10 15 15 H 1.09003 * 108.77028 * 326.48911 * 14 13 11 16 16 C 1.50473 * 108.87769 * 85.00550 * 14 13 11 17 17 C 1.54236 * 108.51943 * 214.93014 * 16 14 13 18 18 C 1.45546 * 112.40892 * 280.00286 * 17 16 14 19 19 C 1.54248 * 112.39985 * 61.93871 * 18 17 16 20 20 C 1.50476 * 108.52488 * 280.01810 * 19 18 17 21 21 C 1.54061 * 112.50196 * 94.14853 * 20 19 18 22 22 H 1.09001 * 108.72518 * 79.08334 * 21 20 19 23 23 N 1.46901 * 108.81876 * 197.42273 * 21 20 19 24 24 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47917 * 59.99959 * 10 9 7 26 26 H 1.09002 * 109.46953 * 299.99843 * 10 9 7 27 27 H 0.96999 * 120.00325 * 0.02562 * 13 11 10 28 28 H 1.08999 * 109.62748 * 95.22064 * 16 14 13 29 29 H 1.08997 * 109.62546 * 334.64146 * 16 14 13 30 30 H 1.09003 * 108.89060 * 159.25456 * 17 16 14 31 31 H 1.08995 * 108.81903 * 40.70758 * 17 16 14 32 32 H 1.08995 * 108.89611 * 182.69184 * 18 17 16 33 33 H 1.08994 * 108.89692 * 301.18848 * 18 17 16 34 34 H 1.08999 * 109.62878 * 39.72432 * 19 18 17 35 35 H 1.08993 * 109.62768 * 160.31065 * 19 18 17 36 36 H 1.09003 * 108.87444 * 333.36987 * 20 19 18 37 37 H 1.09003 * 108.79827 * 214.87747 * 20 19 18 38 38 H 1.00903 * 111.00076 * 303.29379 * 23 21 20 39 39 H 1.00905 * 110.99513 * 67.24189 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7914 -5.5023 -0.0021 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0019 15 1 1.4022 -7.7418 0.5684 16 6 2.0433 -8.1272 -1.4202 17 6 0.8025 -9.0433 -1.4222 18 6 1.1222 -10.4112 -1.0413 19 6 1.6825 -10.5064 0.3926 20 6 3.1376 -10.1241 0.3636 21 6 3.3621 -8.6334 0.6814 22 1 3.2982 -8.4922 1.7604 23 7 4.7077 -8.2507 0.2332 24 1 -0.4851 0.8399 -0.0004 25 1 3.1247 -3.7313 0.8894 26 1 3.1246 -3.7312 -0.8906 27 1 3.8013 -6.1833 -0.0015 28 1 2.8987 -8.6683 -1.8247 29 1 1.8464 -7.2425 -2.0257 30 1 0.3686 -9.0476 -2.4222 31 1 0.0694 -8.6439 -0.7214 32 1 0.2182 -11.0165 -1.1080 33 1 1.8622 -10.8074 -1.7365 34 1 1.1376 -9.8238 1.0447 35 1 1.5796 -11.5278 0.7588 36 1 3.5387 -10.3377 -0.6272 37 1 3.6735 -10.7258 1.0977 38 1 5.4110 -8.8334 0.6621 39 1 4.7762 -8.2825 -0.7730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:14 Heat of formation + Delta-G solvation = -54.294369 kcal Electronic energy + Delta-G solvation = -19111.264826 eV Core-core repulsion = 16179.077674 eV Total energy + Delta-G solvation = -2932.187152 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.15676 -38.21103 -34.97674 -33.73550 -32.38015 -31.31906 -29.71938 -28.14638 -25.45392 -24.45237 -23.95748 -20.75405 -20.12706 -19.48875 -17.81305 -16.95571 -16.39564 -15.56874 -15.36275 -14.83850 -14.76136 -14.65769 -14.44224 -13.84307 -13.42157 -13.29315 -12.99549 -12.76995 -12.65702 -12.43359 -12.17584 -11.78383 -11.05645 -11.02129 -10.96595 -10.87383 -10.77168 -10.69751 -10.60847 -10.53099 -9.74554 -9.23434 -9.03023 -8.99911 -8.67796 -8.16184 -6.43573 -6.17144 -3.86694 3.12909 3.23582 3.25173 3.31925 3.37917 3.79967 4.25357 4.29812 4.36764 4.48720 4.67674 4.80221 5.02671 5.05114 5.10793 5.17857 5.18167 5.32877 5.45049 5.57123 5.62325 5.70832 5.77610 5.86984 5.87908 5.95121 6.00049 6.08149 6.14435 6.24798 6.28552 6.32918 6.69940 6.98111 7.11718 7.64798 7.99274 8.40457 8.79976 9.28377 10.90359 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.003665 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.628314 B = 7637.026657 C = 8078.560600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.062 6.062 10 C -0.152 4.152 11 C 0.529 3.471 12 O -0.524 6.524 13 N -0.726 5.726 14 C 0.154 3.846 15 H 0.088 0.912 16 C -0.125 4.125 17 C -0.120 4.120 18 C -0.115 4.115 19 C -0.120 4.120 20 C -0.146 4.146 21 C 0.086 3.914 22 H 0.083 0.917 23 N -0.844 5.844 24 H 0.267 0.733 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.406 0.594 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.343 0.657 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -21.694 -0.917 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.302 4.302 11 C 0.315 3.685 12 O -0.399 6.399 13 N -0.382 5.382 14 C 0.049 3.951 15 H 0.106 0.894 16 C -0.163 4.163 17 C -0.158 4.158 18 C -0.153 4.153 19 C -0.158 4.158 20 C -0.186 4.186 21 C -0.026 4.026 22 H 0.101 0.899 23 N -0.374 5.374 24 H 0.077 0.923 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.243 0.757 28 H 0.077 0.923 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.156 0.844 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.322 -21.190 -0.566 22.121 hybrid contribution 2.506 0.336 -0.392 2.559 sum 8.828 -20.855 -0.959 22.667 Atomic orbital electron populations 1.70034 1.05937 1.27252 1.47164 1.24989 0.95016 0.99001 0.94623 0.86125 0.79620 0.81939 0.77848 1.19611 1.20606 1.20609 1.22929 0.94968 0.91734 1.58557 0.90910 1.85356 1.05195 0.96302 1.96693 1.23517 1.06318 0.95580 1.04815 1.20307 0.86604 0.86391 0.75185 1.90681 1.15440 1.85640 1.48090 1.46120 1.10672 1.04522 1.76858 1.20735 0.96918 0.81421 0.96067 0.89390 1.21781 0.97662 0.99937 0.96969 1.20433 0.98155 0.95040 1.02161 1.20502 1.00962 0.97518 0.96285 1.21328 0.95618 1.01386 0.97436 1.22174 0.97797 0.96756 1.01826 1.22183 0.88669 0.91658 1.00118 0.89894 1.58829 1.04354 1.61106 1.13111 0.92310 0.89355 0.89417 0.75687 0.92252 0.90803 0.92089 0.91325 0.92287 0.92530 0.91145 0.91921 0.91917 0.92076 0.84360 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.53 13.22 55.49 0.73 -25.80 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 8 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.15 -3.19 6.16 36.01 0.22 -2.97 16 11 C 0.53 10.24 7.64 -10.98 -0.08 10.15 16 12 O -0.52 -12.04 15.48 5.55 0.09 -11.96 16 13 N -0.73 -10.35 4.88 -54.49 -0.27 -10.62 16 14 C 0.15 1.85 1.74 -68.63 -0.12 1.74 16 15 H 0.09 1.27 5.98 -51.93 -0.31 0.96 16 16 C -0.12 -1.40 5.19 -27.35 -0.14 -1.54 16 17 C -0.12 -1.26 5.26 -29.60 -0.16 -1.41 16 18 C -0.12 -0.95 5.26 -29.59 -0.16 -1.10 16 19 C -0.12 -0.93 5.61 -27.34 -0.15 -1.08 16 20 C -0.15 -1.03 4.84 -27.44 -0.13 -1.16 16 21 C 0.09 0.76 3.08 -66.60 -0.21 0.55 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 23 N -0.84 -6.32 7.77 -3.72 -0.03 -6.35 16 24 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.09 1.75 8.14 -51.91 -0.42 1.32 16 26 H 0.09 1.72 8.14 -51.91 -0.42 1.29 16 27 H 0.41 5.11 7.36 -40.82 -0.30 4.81 16 28 H 0.06 0.55 6.28 -51.93 -0.33 0.22 16 29 H 0.07 1.03 7.79 -51.93 -0.40 0.62 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.84 7.46 -51.93 -0.39 0.45 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.43 7.47 -51.93 -0.39 0.04 16 34 H 0.07 0.63 6.98 -51.93 -0.36 0.26 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.42 6.62 -51.93 -0.34 0.08 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.34 1.99 8.99 -39.29 -0.35 1.64 16 39 H 0.34 2.36 8.20 -39.29 -0.32 2.04 16 LS Contribution 318.79 15.07 4.80 4.80 Total: -1.00 -33.45 318.79 -8.64 -42.08 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.00 Total: 5.09 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: -0.73 Total: -10.02 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.44 Total: -42.76 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.96 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.45 -8.64 -42.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.211 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds