Wall clock time and date at job start Mon Mar 30 2020 04:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86798 * 119.99464 * 2 1 4 4 H 1.48506 * 109.47032 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47160 * 300.00006 * 3 2 1 6 6 H 1.48501 * 109.47263 * 60.00088 * 3 2 1 7 7 C 1.38797 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00043 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99778 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99617 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47062 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00017 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99910 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99735 * 179.97438 * 13 11 10 15 15 H 1.09003 * 108.77028 * 326.48911 * 14 13 11 16 16 C 1.50473 * 108.87769 * 85.00550 * 14 13 11 17 17 C 1.54236 * 108.51943 * 214.93014 * 16 14 13 18 18 C 1.45546 * 112.40892 * 280.00286 * 17 16 14 19 19 C 1.54248 * 112.39985 * 61.93871 * 18 17 16 20 20 C 1.50476 * 108.52488 * 280.01810 * 19 18 17 21 21 C 1.54061 * 112.50196 * 94.14853 * 20 19 18 22 22 H 1.09001 * 108.72518 * 79.08334 * 21 20 19 23 23 N 1.46901 * 108.81876 * 197.42273 * 21 20 19 24 24 H 0.96996 * 120.00709 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47917 * 59.99959 * 10 9 7 26 26 H 1.09002 * 109.46953 * 299.99843 * 10 9 7 27 27 H 0.96999 * 120.00325 * 0.02562 * 13 11 10 28 28 H 1.08999 * 109.62748 * 95.22064 * 16 14 13 29 29 H 1.08997 * 109.62546 * 334.64146 * 16 14 13 30 30 H 1.09003 * 108.89060 * 159.25456 * 17 16 14 31 31 H 1.08995 * 108.81903 * 40.70758 * 17 16 14 32 32 H 1.08995 * 108.89611 * 182.69184 * 18 17 16 33 33 H 1.08994 * 108.89692 * 301.18848 * 18 17 16 34 34 H 1.08999 * 109.62878 * 39.72432 * 19 18 17 35 35 H 1.08993 * 109.62768 * 160.31065 * 19 18 17 36 36 H 1.09003 * 108.87444 * 333.36987 * 20 19 18 37 37 H 1.09003 * 108.79827 * 214.87747 * 20 19 18 38 38 H 1.00903 * 111.00076 * 303.29379 * 23 21 20 39 39 H 1.00905 * 110.99513 * 67.24189 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3466 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0104 -1.2020 -0.0005 8 1 3.0904 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7914 -5.5023 -0.0021 13 7 2.8445 -6.3430 -0.0018 14 6 2.3308 -7.7150 -0.0019 15 1 1.4022 -7.7418 0.5684 16 6 2.0433 -8.1272 -1.4202 17 6 0.8025 -9.0433 -1.4222 18 6 1.1222 -10.4112 -1.0413 19 6 1.6825 -10.5064 0.3926 20 6 3.1376 -10.1241 0.3636 21 6 3.3621 -8.6334 0.6814 22 1 3.2982 -8.4922 1.7604 23 7 4.7077 -8.2507 0.2332 24 1 -0.4851 0.8399 -0.0004 25 1 3.1247 -3.7313 0.8894 26 1 3.1246 -3.7312 -0.8906 27 1 3.8013 -6.1833 -0.0015 28 1 2.8987 -8.6683 -1.8247 29 1 1.8464 -7.2425 -2.0257 30 1 0.3686 -9.0476 -2.4222 31 1 0.0694 -8.6439 -0.7214 32 1 0.2182 -11.0165 -1.1080 33 1 1.8622 -10.8074 -1.7365 34 1 1.1376 -9.8238 1.0447 35 1 1.5796 -11.5278 0.7588 36 1 3.5387 -10.3377 -0.6272 37 1 3.6735 -10.7258 1.0977 38 1 5.4110 -8.8334 0.6621 39 1 4.7762 -8.2825 -0.7730 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011768.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:13 Heat of formation + Delta-G solvation = -79.031650 kcal Electronic energy + Delta-G solvation = -19112.337515 eV Core-core repulsion = 16179.077674 eV Total energy + Delta-G solvation = -2933.259841 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.25881 -39.46844 -35.89661 -34.76394 -34.57561 -32.39057 -30.85262 -29.33022 -27.65732 -25.34919 -24.73943 -21.71433 -21.38433 -20.45219 -19.72400 -18.05471 -17.72435 -16.88172 -16.60553 -16.52834 -16.14058 -15.70636 -15.45290 -15.26015 -14.62754 -14.49207 -14.16349 -13.95432 -13.81401 -13.41454 -13.19346 -13.15313 -12.97521 -12.90065 -12.58508 -11.86686 -11.75184 -11.65283 -11.53861 -11.42945 -11.25310 -11.15355 -10.83658 -10.26708 -9.99124 -9.59632 -8.65948 -8.34349 -6.12355 1.28229 1.41765 1.47937 1.59608 1.67408 2.27182 2.35224 2.99633 3.33184 3.55563 3.60824 3.75084 3.99405 4.02264 4.08707 4.18280 4.31221 4.31981 4.36752 4.46090 4.51985 4.67614 4.76287 4.95863 4.99355 5.04496 5.17075 5.24310 5.28443 5.37696 5.42349 5.45148 5.52572 5.59907 6.20512 6.22475 6.61459 6.66643 7.06856 7.35745 8.75230 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040592 B = 0.003665 C = 0.003465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.628314 B = 7637.026657 C = 8078.560600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.150 6.150 10 C -0.128 4.128 11 C 0.529 3.471 12 O -0.568 6.568 13 N -0.701 5.701 14 C 0.153 3.847 15 H 0.060 0.940 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.138 4.138 21 C 0.097 3.903 22 H 0.075 0.925 23 N -0.847 5.847 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.418 0.582 28 H 0.088 0.912 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.358 0.642 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -22.883 -1.089 25.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.199 1.199 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.279 4.279 11 C 0.315 3.685 12 O -0.447 6.447 13 N -0.356 5.356 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.150 4.150 19 C -0.159 4.159 20 C -0.178 4.178 21 C -0.016 4.016 22 H 0.093 0.907 23 N -0.379 5.379 24 H 0.080 0.920 25 H 0.123 0.877 26 H 0.124 0.876 27 H 0.258 0.742 28 H 0.106 0.894 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.173 0.827 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.294 -22.428 -0.737 24.288 hybrid contribution 1.615 0.591 -0.339 1.753 sum 10.909 -21.837 -1.076 24.434 Atomic orbital electron populations 1.70192 1.07981 1.28552 1.48098 1.26139 0.95978 1.03324 0.93698 0.84889 0.78581 0.76239 0.78124 1.18068 1.19824 1.19866 1.23249 0.95340 0.92083 1.58797 0.90043 1.85530 1.10565 0.99144 1.97021 1.23361 1.03440 0.94738 1.06401 1.20076 0.86372 0.86759 0.75320 1.90672 1.17326 1.86076 1.50596 1.45927 1.10628 1.04510 1.74492 1.20913 0.97060 0.80555 0.96680 0.92202 1.21709 0.99105 0.99184 0.95794 1.20412 0.97169 0.96355 1.01492 1.20473 1.01822 0.95722 0.97014 1.21346 0.95938 1.01925 0.96691 1.22114 0.97411 0.95131 1.03096 1.21990 0.88355 0.92145 0.99092 0.90709 1.58748 1.03793 1.61675 1.13729 0.91983 0.87718 0.87590 0.74250 0.89354 0.93838 0.92106 0.94073 0.91784 0.90839 0.92989 0.90306 0.90664 0.90294 0.82738 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.89 13.22 21.65 0.29 -56.60 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.34 29.55 68.60 2.03 46.37 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -32.03 9.50 67.95 0.65 -31.38 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 9 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 10 C -0.13 -5.39 6.16 71.24 0.44 -4.95 16 11 C 0.53 20.79 7.64 87.66 0.67 21.46 16 12 O -0.57 -27.36 15.48 -3.04 -0.05 -27.40 16 13 N -0.70 -19.52 4.88 -444.68 -2.17 -21.69 16 14 C 0.15 3.61 1.74 44.54 0.08 3.69 16 15 H 0.06 1.80 5.98 -2.39 -0.01 1.78 16 16 C -0.12 -2.61 5.19 30.20 0.16 -2.45 16 17 C -0.12 -2.43 5.26 28.74 0.15 -2.28 16 18 C -0.11 -1.66 5.26 28.74 0.15 -1.51 16 19 C -0.12 -1.64 5.61 30.20 0.17 -1.47 16 20 C -0.14 -1.52 4.84 30.14 0.15 -1.37 16 21 C 0.10 1.50 3.08 45.64 0.14 1.64 16 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 23 N -0.85 -10.07 7.77 -165.68 -1.29 -11.36 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.10 4.05 8.14 -2.39 -0.02 4.03 16 26 H 0.11 4.05 8.14 -2.39 -0.02 4.04 16 27 H 0.42 9.70 7.36 -92.71 -0.68 9.02 16 28 H 0.09 1.40 6.28 -2.39 -0.02 1.39 16 29 H 0.04 1.22 7.79 -2.39 -0.02 1.20 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.04 1.07 7.46 -2.39 -0.02 1.06 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.87 7.47 -2.39 -0.02 0.85 16 34 H 0.05 0.91 6.98 -2.39 -0.02 0.89 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.69 6.62 -2.39 -0.02 0.67 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.36 2.85 8.99 -89.69 -0.81 2.04 16 39 H 0.35 3.59 8.20 -89.69 -0.74 2.85 16 Total: -1.00 -75.51 318.79 -0.29 -75.80 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: -1.15 Total: 22.03 kcal Atomic # 6 Polarization: -20.61 SS G_CDS: 3.21 Total: -17.40 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -3.17 Total: -89.65 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.05 Total: -27.40 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -75.51 -0.29 -75.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011768.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.236 kcal (2) G-P(sol) polarization free energy of solvation -75.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds