Wall clock time and date at job start Mon Mar 30 2020 04:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99631 * 3 2 1 5 5 H 1.48505 * 109.46880 * 209.99463 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99790 * 3 2 1 7 7 C 1.38798 * 120.00298 * 179.71993 * 2 1 3 8 8 H 1.08001 * 119.99838 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00541 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00370 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46747 * 35.00322 * 14 13 11 16 16 C 1.52993 * 109.47579 * 275.00220 * 14 13 11 17 17 C 1.52996 * 109.47266 * 300.00184 * 16 14 13 18 18 C 1.53005 * 109.47164 * 299.99675 * 17 16 14 19 19 C 1.53002 * 109.46800 * 59.99886 * 18 17 16 20 20 C 1.53003 * 109.47168 * 154.99944 * 14 13 11 21 21 H 1.08998 * 109.47450 * 179.97438 * 20 14 13 22 22 C 1.53004 * 109.47373 * 300.00734 * 20 14 13 23 23 N 1.46894 * 109.47080 * 184.99950 * 22 20 14 24 24 H 0.97005 * 119.99723 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46574 * 300.00119 * 10 9 7 26 26 H 1.08998 * 109.47347 * 59.99464 * 10 9 7 27 27 H 0.97007 * 119.99256 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46767 * 59.99731 * 16 14 13 29 29 H 1.09002 * 109.47615 * 179.97438 * 16 14 13 30 30 H 1.09005 * 109.47315 * 179.97438 * 17 16 14 31 31 H 1.09002 * 109.47395 * 59.99783 * 17 16 14 32 32 H 1.09002 * 109.47052 * 300.00318 * 18 17 16 33 33 H 1.08993 * 109.46922 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46804 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46965 * 60.00379 * 19 18 17 36 36 H 1.09000 * 109.46708 * 304.99511 * 22 20 14 37 37 H 1.09003 * 109.47046 * 64.99525 * 22 20 14 38 38 H 1.00897 * 111.00233 * 180.02562 * 23 22 20 39 39 H 1.00904 * 110.99959 * 303.95266 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4477 2.6526 -0.7000 7 6 2.0104 -1.2020 0.0059 8 1 3.0904 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0127 10 6 2.5160 -3.8913 0.0194 11 6 1.9876 -5.3026 0.0253 12 8 0.7914 -5.5023 0.0254 13 7 2.8443 -6.3430 0.0304 14 6 2.3307 -7.7149 0.0366 15 1 1.4151 -7.7627 -0.5529 16 6 2.0336 -8.1418 1.4755 17 6 3.3187 -8.0747 2.3030 18 6 4.3645 -9.0135 1.6982 19 6 4.6615 -8.5867 0.2593 20 6 3.3764 -8.6538 -0.5683 21 1 2.9944 -9.6747 -0.5633 22 6 3.6735 -8.2269 -2.0072 23 7 4.5860 -9.1969 -2.6272 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1253 -3.7355 -0.8709 26 1 3.1240 -3.7269 0.9090 27 1 3.8012 -6.1833 0.0307 28 1 1.2886 -7.4729 1.9064 29 1 1.6510 -9.1624 1.4801 30 1 3.1069 -8.3784 3.3283 31 1 3.7009 -7.0539 2.2985 32 1 3.9822 -10.0343 1.7027 33 1 5.2801 -8.9653 2.2875 34 1 5.4062 -9.2558 -0.1718 35 1 5.0438 -7.5659 0.2547 36 1 2.7435 -8.1892 -2.5744 37 1 4.1381 -7.2408 -2.0051 38 1 4.7982 -8.9368 -3.5787 39 1 5.4301 -9.2979 -2.0836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:55 Heat of formation + Delta-G solvation = -68.108408 kcal Electronic energy + Delta-G solvation = -19186.566772 eV Core-core repulsion = 16253.780599 eV Total energy + Delta-G solvation = -2932.786173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.34670 -38.12140 -34.88211 -33.60077 -32.53436 -30.66859 -30.42345 -28.45287 -24.96575 -24.79566 -22.76896 -21.40537 -20.82400 -19.09160 -18.38321 -16.95119 -16.27376 -15.91876 -15.45329 -15.14231 -14.70001 -14.49731 -14.10788 -13.87142 -13.78253 -13.54349 -13.22051 -12.59218 -12.43967 -12.32002 -12.20025 -12.01876 -11.78270 -11.65015 -11.28133 -10.91992 -10.76238 -10.50982 -10.20338 -10.19593 -9.58903 -9.46300 -9.08341 -9.01736 -8.80877 -8.22726 -6.67556 -6.63100 -4.00824 2.93969 3.02091 3.33963 3.38162 3.53629 3.63011 4.16534 4.24192 4.43458 4.49157 4.55531 4.94149 4.97818 5.06254 5.11220 5.19968 5.21641 5.25323 5.33066 5.38528 5.50282 5.57340 5.64585 5.72278 5.76020 5.81740 5.93693 5.98964 6.00277 6.06258 6.17316 6.21526 6.65716 6.80743 7.10443 7.66149 7.91247 8.49333 8.55183 9.26263 10.80911 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.003951 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.583193 B = 7084.511950 C = 7304.534812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.280 1.280 7 C -0.608 4.608 8 H 0.065 0.935 9 S -0.115 6.115 10 C -0.131 4.131 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.729 5.729 14 C 0.154 3.846 15 H 0.088 0.912 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.117 4.117 20 C -0.091 4.091 21 H 0.092 0.908 22 C 0.064 3.936 23 N -0.852 5.852 24 H 0.278 0.722 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.395 0.605 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.341 0.659 39 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.172 -18.764 0.152 22.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.175 4.175 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.756 4.756 8 H 0.083 0.917 9 S 0.111 5.889 10 C -0.282 4.282 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.384 5.384 14 C 0.048 3.952 15 H 0.106 0.894 16 C -0.169 4.169 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.155 4.155 20 C -0.111 4.111 21 H 0.110 0.890 22 C -0.066 4.066 23 N -0.382 5.382 24 H 0.091 0.909 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.230 0.770 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.154 0.846 39 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.360 -17.991 0.258 20.282 hybrid contribution 2.926 -0.429 -0.052 2.958 sum 12.286 -18.420 0.206 22.142 Atomic orbital electron populations 1.70771 1.06709 1.31007 1.43384 1.26048 0.96320 1.02117 0.93007 0.83292 0.74410 0.73969 0.77036 1.21047 1.21333 1.20493 1.23734 0.96021 0.92250 1.63607 0.91654 1.84818 1.08104 0.98760 1.97205 1.23318 1.05069 0.94838 1.05017 1.20252 0.86649 0.86254 0.75185 1.90695 1.15328 1.85550 1.47633 1.46098 1.09644 1.05316 1.77296 1.20860 0.97147 0.80795 0.96403 0.89373 1.21911 0.97988 1.01729 0.95280 1.21504 0.95379 0.99979 0.98798 1.21523 0.98941 0.99545 0.95474 1.21614 0.97085 1.01212 0.95581 1.21460 0.95691 1.00260 0.93667 0.89007 1.21823 0.97282 0.92890 0.94643 1.58780 1.20219 1.52428 1.06729 0.90946 0.89217 0.89139 0.77031 0.91012 0.91246 0.92062 0.91831 0.91851 0.92072 0.91585 0.92282 0.90769 0.95155 0.84646 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.60 13.67 55.49 0.76 -26.85 16 2 C 0.04 1.04 5.49 -17.43 -0.10 0.94 16 3 Si 1.09 25.01 29.92 -169.99 -5.09 19.93 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.61 -17.58 9.50 30.94 0.29 -17.28 16 8 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.11 19.60 -107.50 -2.11 -5.21 16 10 C -0.13 -2.65 6.16 36.00 0.22 -2.42 16 11 C 0.53 9.69 7.81 -10.99 -0.09 9.60 16 12 O -0.52 -11.50 15.52 5.56 0.09 -11.42 16 13 N -0.73 -9.41 3.62 -53.81 -0.19 -9.60 16 14 C 0.15 1.77 2.23 -67.94 -0.15 1.62 16 15 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 16 C -0.13 -1.45 5.60 -26.74 -0.15 -1.60 16 17 C -0.12 -1.14 5.77 -26.73 -0.15 -1.29 16 18 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 19 C -0.12 -0.87 4.80 -26.73 -0.13 -1.00 16 20 C -0.09 -0.81 2.19 -90.61 -0.20 -1.01 16 21 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 22 C 0.06 0.59 6.01 -3.82 -0.02 0.57 16 23 N -0.85 -6.61 9.62 -10.37 -0.10 -6.71 16 24 H 0.28 8.87 7.13 -40.82 -0.29 8.58 16 25 H 0.09 1.69 8.14 -51.91 -0.42 1.26 16 26 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 27 H 0.39 4.21 6.67 -40.82 -0.27 3.94 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.67 7.60 -51.93 -0.39 0.28 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.43 6.68 -51.93 -0.35 0.08 16 35 H 0.06 0.45 6.51 -51.93 -0.34 0.11 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.29 7.61 -51.93 -0.40 -0.11 16 38 H 0.34 2.30 9.08 -39.29 -0.36 1.94 16 39 H 0.34 2.18 7.25 -39.29 -0.28 1.90 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -33.82 321.92 -8.50 -42.33 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.08 Total: 5.62 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.63 Total: -12.94 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.46 Total: -43.16 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.82 -8.50 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.783 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds