Wall clock time and date at job start Mon Mar 30 2020 04:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86803 * 119.99643 * 2 1 4 4 H 1.48501 * 109.47085 * 89.99631 * 3 2 1 5 5 H 1.48505 * 109.46880 * 209.99463 * 3 2 1 6 6 H 1.48490 * 109.47245 * 329.99790 * 3 2 1 7 7 C 1.38798 * 120.00298 * 179.71993 * 2 1 3 8 8 H 1.08001 * 119.99838 * 180.02562 * 7 2 1 9 9 S 1.76200 * 119.99691 * 0.02562 * 7 2 1 10 10 C 1.81006 * 99.99914 * 180.02562 * 9 7 2 11 11 C 1.50692 * 109.47105 * 180.02562 * 10 9 7 12 12 O 1.21276 * 120.00541 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00195 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00370 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.46747 * 35.00322 * 14 13 11 16 16 C 1.52993 * 109.47579 * 275.00220 * 14 13 11 17 17 C 1.52996 * 109.47266 * 300.00184 * 16 14 13 18 18 C 1.53005 * 109.47164 * 299.99675 * 17 16 14 19 19 C 1.53002 * 109.46800 * 59.99886 * 18 17 16 20 20 C 1.53003 * 109.47168 * 154.99944 * 14 13 11 21 21 H 1.08998 * 109.47450 * 179.97438 * 20 14 13 22 22 C 1.53004 * 109.47373 * 300.00734 * 20 14 13 23 23 N 1.46894 * 109.47080 * 184.99950 * 22 20 14 24 24 H 0.97005 * 119.99723 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46574 * 300.00119 * 10 9 7 26 26 H 1.08998 * 109.47347 * 59.99464 * 10 9 7 27 27 H 0.97007 * 119.99256 * 0.02562 * 13 11 10 28 28 H 1.09002 * 109.46767 * 59.99731 * 16 14 13 29 29 H 1.09002 * 109.47615 * 179.97438 * 16 14 13 30 30 H 1.09005 * 109.47315 * 179.97438 * 17 16 14 31 31 H 1.09002 * 109.47395 * 59.99783 * 17 16 14 32 32 H 1.09002 * 109.47052 * 300.00318 * 18 17 16 33 33 H 1.08993 * 109.46922 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.46804 * 180.02562 * 19 18 17 35 35 H 1.09002 * 109.46965 * 60.00379 * 19 18 17 36 36 H 1.09000 * 109.46708 * 304.99511 * 22 20 14 37 37 H 1.09003 * 109.47046 * 64.99525 * 22 20 14 38 38 H 1.00897 * 111.00233 * 180.02562 * 23 22 20 39 39 H 1.00904 * 110.99959 * 303.95266 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0466 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4477 2.6526 -0.7000 7 6 2.0104 -1.2020 0.0059 8 1 3.0904 -1.2019 0.0063 9 16 1.1294 -2.7279 0.0127 10 6 2.5160 -3.8913 0.0194 11 6 1.9876 -5.3026 0.0253 12 8 0.7914 -5.5023 0.0254 13 7 2.8443 -6.3430 0.0304 14 6 2.3307 -7.7149 0.0366 15 1 1.4151 -7.7627 -0.5529 16 6 2.0336 -8.1418 1.4755 17 6 3.3187 -8.0747 2.3030 18 6 4.3645 -9.0135 1.6982 19 6 4.6615 -8.5867 0.2593 20 6 3.3764 -8.6538 -0.5683 21 1 2.9944 -9.6747 -0.5633 22 6 3.6735 -8.2269 -2.0072 23 7 4.5860 -9.1969 -2.6272 24 1 -0.4850 -0.8401 -0.0004 25 1 3.1253 -3.7355 -0.8709 26 1 3.1240 -3.7269 0.9090 27 1 3.8012 -6.1833 0.0307 28 1 1.2886 -7.4729 1.9064 29 1 1.6510 -9.1624 1.4801 30 1 3.1069 -8.3784 3.3283 31 1 3.7009 -7.0539 2.2985 32 1 3.9822 -10.0343 1.7027 33 1 5.2801 -8.9653 2.2875 34 1 5.4062 -9.2558 -0.1718 35 1 5.0438 -7.5659 0.2547 36 1 2.7435 -8.1892 -2.5744 37 1 4.1381 -7.2408 -2.0051 38 1 4.7982 -8.9368 -3.5787 39 1 5.4301 -9.2979 -2.0836 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011771.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:55 Heat of formation + Delta-G solvation = -92.628873 kcal Electronic energy + Delta-G solvation = -19187.630059 eV Core-core repulsion = 16253.780599 eV Total energy + Delta-G solvation = -2933.849461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.45648 -39.35355 -35.62411 -34.81006 -34.72483 -31.88109 -31.17090 -29.75432 -27.08751 -25.65384 -23.62705 -22.46813 -21.80739 -20.45907 -20.08601 -18.27721 -17.41017 -16.94360 -16.71368 -16.23586 -15.94610 -15.76348 -15.67866 -15.12741 -14.87424 -14.53571 -14.35951 -14.27968 -13.94716 -13.79094 -13.22673 -13.02092 -12.93918 -12.75621 -12.49932 -12.03641 -11.95021 -11.57630 -11.46666 -11.32166 -11.11555 -11.02217 -10.97662 -10.33637 -10.13238 -9.60280 -8.93827 -8.88076 -6.28931 1.19146 1.51088 1.52793 1.60597 1.78857 2.19744 2.34049 3.01439 3.12693 3.41751 3.68549 3.73392 3.84812 3.90538 4.13297 4.15375 4.26599 4.33624 4.34132 4.44772 4.49584 4.57526 4.62874 4.75357 4.89382 5.00619 5.09001 5.19614 5.21081 5.27362 5.36951 5.44813 5.55869 5.62855 6.13707 6.19501 6.42871 6.58756 7.05156 7.17114 8.49770 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028061 B = 0.003951 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.583193 B = 7084.511950 C = 7304.534812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.018 4.018 3 Si 1.139 2.861 4 H -0.268 1.268 5 H -0.262 1.262 6 H -0.279 1.279 7 C -0.614 4.614 8 H 0.074 0.926 9 S -0.194 6.194 10 C -0.110 4.110 11 C 0.534 3.466 12 O -0.564 6.564 13 N -0.700 5.700 14 C 0.152 3.848 15 H 0.062 0.938 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.112 4.112 19 C -0.114 4.114 20 C -0.079 4.079 21 H 0.097 0.903 22 C 0.067 3.933 23 N -0.852 5.852 24 H 0.261 0.739 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.410 0.590 28 H 0.036 0.964 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.028 0.972 38 H 0.348 0.652 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.461 -19.784 0.266 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.221 4.221 3 Si 0.957 3.043 4 H -0.193 1.193 5 H -0.187 1.187 6 H -0.204 1.204 7 C -0.762 4.762 8 H 0.092 0.908 9 S 0.033 5.967 10 C -0.261 4.261 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.354 5.354 14 C 0.047 3.953 15 H 0.081 0.919 16 C -0.167 4.167 17 C -0.155 4.155 18 C -0.149 4.149 19 C -0.152 4.152 20 C -0.098 4.098 21 H 0.115 0.885 22 C -0.064 4.064 23 N -0.384 5.384 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.127 0.873 27 H 0.248 0.752 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.161 0.839 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 12.711 -19.072 0.374 22.922 hybrid contribution 1.934 -0.274 -0.094 1.956 sum 14.645 -19.346 0.280 24.265 Atomic orbital electron populations 1.70894 1.08031 1.30025 1.45930 1.27832 0.96293 1.06362 0.91642 0.82685 0.74007 0.69446 0.78184 1.19280 1.18673 1.20423 1.24061 0.96476 0.92842 1.62805 0.90756 1.85065 1.13127 1.01095 1.97460 1.23225 1.02159 0.93985 1.06759 1.19973 0.86364 0.86530 0.75214 1.90688 1.17331 1.85988 1.50251 1.45842 1.09823 1.04888 1.74889 1.20984 0.97311 0.80176 0.96795 0.91941 1.21874 0.98264 1.01740 0.94801 1.21496 0.94922 1.00080 0.98962 1.21497 0.98731 0.99255 0.95441 1.21626 0.96361 1.01948 0.95235 1.21354 0.95571 0.99319 0.93571 0.88498 1.21717 0.96882 0.93250 0.94577 1.58731 1.20602 1.51735 1.07285 0.92852 0.87310 0.87292 0.75161 0.94476 0.89612 0.91590 0.92887 0.91026 0.90650 0.89604 0.92032 0.92680 0.95351 0.83893 0.83746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -58.33 13.67 21.65 0.30 -58.03 16 2 C -0.02 -1.06 5.49 84.86 0.47 -0.59 16 3 Si 1.14 49.38 29.92 68.60 2.05 51.43 16 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.61 -35.57 9.50 67.95 0.65 -34.92 16 8 H 0.07 4.03 7.80 -2.91 -0.02 4.01 16 9 S -0.19 -10.76 19.60 -56.49 -1.11 -11.87 16 10 C -0.11 -4.36 6.16 71.23 0.44 -3.92 16 11 C 0.53 19.55 7.81 87.65 0.68 20.24 16 12 O -0.56 -26.05 15.52 -3.02 -0.05 -26.09 16 13 N -0.70 -17.40 3.62 -442.56 -1.60 -19.00 16 14 C 0.15 3.42 2.23 44.99 0.10 3.52 16 15 H 0.06 1.76 7.58 -2.39 -0.02 1.75 16 16 C -0.13 -2.77 5.60 30.59 0.17 -2.60 16 17 C -0.12 -2.01 5.77 30.59 0.18 -1.83 16 18 C -0.11 -1.33 5.92 30.60 0.18 -1.15 16 19 C -0.11 -1.29 4.80 30.60 0.15 -1.15 16 20 C -0.08 -1.22 2.19 -10.79 -0.02 -1.24 16 21 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 22 C 0.07 1.10 6.01 86.31 0.52 1.62 16 23 N -0.85 -11.05 9.62 -186.72 -1.80 -12.84 16 24 H 0.26 17.32 7.13 -92.70 -0.66 16.66 16 25 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 26 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 27 H 0.41 7.79 6.67 -92.70 -0.62 7.17 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 1.02 7.60 -2.39 -0.02 1.00 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 0.72 6.68 -2.39 -0.02 0.70 16 35 H 0.06 0.69 6.51 -2.39 -0.02 0.68 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.03 0.47 7.61 -2.39 -0.02 0.46 16 38 H 0.35 3.91 9.08 -89.70 -0.81 3.09 16 39 H 0.35 3.31 7.25 -89.69 -0.65 2.66 16 Total: -1.00 -76.01 321.92 0.40 -75.61 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: -0.91 Total: 22.83 kcal Atomic # 6 Polarization: -25.54 SS G_CDS: 3.51 Total: -22.04 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -3.10 Total: -89.88 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.09 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.05 Total: 51.43 kcal Atomic # 16 Polarization: -10.76 SS G_CDS: -1.11 Total: -11.87 kcal Total: -76.01 0.40 -75.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011771.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.014 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds