Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47042 * 269.99548 * 3 2 1 5 5 H 1.48506 * 109.47307 * 29.99453 * 3 2 1 6 6 H 1.48501 * 109.47592 * 149.99787 * 3 2 1 7 7 C 1.38805 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99811 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47354 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99444 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00460 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00208 * 180.02562 * 13 11 10 15 15 H 1.08992 * 109.47084 * 324.99146 * 14 13 11 16 16 C 1.52996 * 109.47369 * 84.99778 * 14 13 11 17 17 C 1.52997 * 109.47165 * 59.99956 * 16 14 13 18 18 C 1.52999 * 109.47592 * 60.00300 * 17 16 14 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99702 * 19 18 17 21 21 H 1.09000 * 109.47140 * 60.00051 * 20 19 18 22 22 C 1.52996 * 109.46975 * 179.97438 * 20 19 18 23 23 N 1.46899 * 109.47552 * 295.00062 * 22 20 19 24 24 H 0.96995 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47153 * 59.99387 * 10 9 7 26 26 H 1.08998 * 109.46833 * 300.00262 * 10 9 7 27 27 H 0.97001 * 119.99903 * 359.97438 * 13 11 10 28 28 H 1.09000 * 109.47054 * 179.97438 * 16 14 13 29 29 H 1.09001 * 109.46997 * 299.99697 * 16 14 13 30 30 H 1.09000 * 109.47140 * 299.99954 * 17 16 14 31 31 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.47839 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47160 * 59.99666 * 18 17 16 34 34 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 36 36 H 1.08998 * 109.47140 * 55.00356 * 22 20 19 37 37 H 1.09000 * 109.47097 * 175.00271 * 22 20 19 38 38 H 1.00899 * 111.00203 * 180.02562 * 23 22 20 39 39 H 1.00899 * 110.99910 * 303.95762 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3303 -7.7151 0.0019 15 1 1.4144 -7.7601 0.5910 16 6 2.0343 -8.1490 -1.4351 17 6 3.3201 -8.0859 -2.2620 18 6 4.3653 -9.0219 -1.6518 19 6 4.6613 -8.5880 -0.2147 20 6 3.3756 -8.6510 0.6121 21 1 2.9933 -9.6718 0.6122 22 6 3.6717 -8.2178 2.0492 23 7 4.5836 -9.1851 2.6744 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1244 -3.7314 -0.8894 27 1 3.8008 -6.1836 0.0015 28 1 1.6525 -9.1699 -1.4351 29 1 1.2896 -7.4822 -1.8699 30 1 3.7023 -7.0652 -2.2621 31 1 3.1091 -8.3946 -3.2859 32 1 5.2815 -8.9767 -2.2406 33 1 3.9831 -10.0427 -1.6517 34 1 5.4057 -9.2550 0.2202 35 1 5.0436 -7.5672 -0.2148 36 1 4.1365 -7.2319 2.0430 37 1 2.7413 -8.1772 2.6156 38 1 4.7943 -8.9212 3.6251 39 1 4.2030 -10.1187 2.6345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = -63.259430 kcal Electronic energy + Delta-G solvation = -19140.669798 eV Core-core repulsion = 16208.093892 eV Total energy + Delta-G solvation = -2932.575906 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22388 -37.97709 -34.81903 -33.46991 -32.41721 -30.53370 -30.41120 -28.29410 -25.47467 -24.71194 -22.65787 -21.30995 -20.84579 -19.00016 -17.91292 -16.66882 -16.03134 -15.76082 -15.40092 -14.79598 -14.68878 -14.62519 -14.35259 -14.04276 -13.94238 -13.27686 -12.85796 -12.57885 -12.46616 -12.20100 -12.05101 -11.88262 -11.75449 -11.09259 -11.05324 -11.01277 -10.75984 -10.63709 -10.41610 -10.13685 -9.79656 -9.33326 -9.05824 -8.94129 -8.77200 -8.21884 -6.48423 -6.20742 -3.90952 3.07815 3.14884 3.23001 3.28969 3.34069 3.77425 4.19134 4.21706 4.51546 4.63409 4.72095 4.96413 5.12696 5.14441 5.17311 5.19198 5.30926 5.35259 5.46588 5.51570 5.58217 5.68432 5.73307 5.80142 5.91316 5.99617 6.06176 6.07410 6.15884 6.16637 6.29545 6.30918 6.75708 6.83153 7.13987 7.60584 7.78734 8.36257 8.67988 9.24678 10.86716 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.003931 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.876129 B = 7121.354432 C = 7341.585656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.519 6.519 13 N -0.729 5.729 14 C 0.153 3.847 15 H 0.085 0.915 16 C -0.130 4.130 17 C -0.119 4.119 18 C -0.120 4.120 19 C -0.106 4.106 20 C -0.090 4.090 21 H 0.079 0.921 22 C 0.063 3.937 23 N -0.849 5.849 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.396 0.604 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.341 0.659 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.159 -19.314 0.704 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.385 5.385 14 C 0.047 3.953 15 H 0.103 0.897 16 C -0.169 4.169 17 C -0.157 4.157 18 C -0.158 4.158 19 C -0.144 4.144 20 C -0.109 4.109 21 H 0.098 0.902 22 C -0.067 4.067 23 N -0.378 5.378 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.231 0.769 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.153 0.847 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.501 -19.312 0.146 21.101 hybrid contribution 1.605 1.228 0.651 2.124 sum 10.106 -18.084 0.797 20.732 Atomic orbital electron populations 1.70021 1.05952 1.27420 1.46940 1.24987 0.95015 0.99005 0.94546 0.86175 0.79417 0.81593 0.78352 1.20271 1.20759 1.19700 1.22878 0.94905 0.91714 1.58868 0.90971 1.85380 1.04998 0.96284 1.96704 1.23532 1.06490 0.95628 1.04788 1.20284 0.86593 0.86277 0.75034 1.90692 1.15369 1.85600 1.47691 1.46120 1.09781 1.05183 1.77367 1.20837 0.96942 0.81152 0.96322 0.89671 1.21905 0.98049 1.01490 0.95411 1.21506 0.95387 1.00143 0.98637 1.21577 0.98797 0.99241 0.96166 1.21482 0.96840 1.01770 0.94286 1.21427 0.96031 0.99270 0.94222 0.90247 1.21838 0.94452 0.96435 0.93999 1.58740 1.49391 1.05578 1.24136 0.92210 0.89402 0.89352 0.76869 0.91507 0.91000 0.91746 0.92249 0.92156 0.92220 0.90630 0.92319 0.90657 0.95284 0.84660 0.85078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.49 29.55 -169.99 -5.02 16.47 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.33 9.50 30.94 0.29 -15.04 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.11 6.16 36.00 0.22 -2.89 16 11 C 0.53 9.84 7.81 -10.99 -0.09 9.76 16 12 O -0.52 -11.67 15.52 5.55 0.09 -11.58 16 13 N -0.73 -9.68 3.62 -53.81 -0.19 -9.87 16 14 C 0.15 1.80 2.23 -67.93 -0.15 1.64 16 15 H 0.09 1.17 7.58 -51.93 -0.39 0.78 16 16 C -0.13 -1.47 5.60 -26.73 -0.15 -1.62 16 17 C -0.12 -1.19 5.76 -26.73 -0.15 -1.35 16 18 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 19 C -0.11 -0.90 4.92 -26.73 -0.13 -1.03 16 20 C -0.09 -0.81 2.12 -90.62 -0.19 -1.00 16 21 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 22 C 0.06 0.58 5.94 -3.83 -0.02 0.56 16 23 N -0.85 -6.39 9.08 -10.37 -0.09 -6.48 16 24 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 26 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 27 H 0.40 4.43 6.67 -40.82 -0.27 4.16 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.06 0.71 7.60 -51.93 -0.39 0.32 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.65 7.75 -51.93 -0.40 0.25 16 35 H 0.06 0.52 6.51 -51.93 -0.34 0.19 16 36 H 0.07 0.77 7.61 -51.93 -0.40 0.37 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.34 2.24 9.08 -39.29 -0.36 1.88 16 39 H 0.34 2.11 8.99 -39.29 -0.35 1.76 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -33.15 325.54 -8.68 -41.83 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.26 Total: 4.26 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -0.63 Total: -10.12 kcal Atomic # 7 Polarization: -42.35 SS G_CDS: 0.45 Total: -41.90 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.09 Total: -11.58 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.15 -8.68 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.433 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds