Wall clock time and date at job start Mon Mar 30 2020 04:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 120.00154 * 2 1 4 4 H 1.48499 * 109.47042 * 269.99548 * 3 2 1 5 5 H 1.48506 * 109.47307 * 29.99453 * 3 2 1 6 6 H 1.48501 * 109.47592 * 149.99787 * 3 2 1 7 7 C 1.38805 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99811 * 179.97438 * 7 2 1 9 9 S 1.76206 * 120.00057 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99997 * 179.97438 * 9 7 2 11 11 C 1.50695 * 109.47354 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99444 * 359.97438 * 11 10 9 13 13 N 1.34768 * 120.00460 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00208 * 180.02562 * 13 11 10 15 15 H 1.08992 * 109.47084 * 324.99146 * 14 13 11 16 16 C 1.52996 * 109.47369 * 84.99778 * 14 13 11 17 17 C 1.52997 * 109.47165 * 59.99956 * 16 14 13 18 18 C 1.52999 * 109.47592 * 60.00300 * 17 16 14 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 16 20 20 C 1.52997 * 109.47164 * 59.99702 * 19 18 17 21 21 H 1.09000 * 109.47140 * 60.00051 * 20 19 18 22 22 C 1.52996 * 109.46975 * 179.97438 * 20 19 18 23 23 N 1.46899 * 109.47552 * 295.00062 * 22 20 19 24 24 H 0.96995 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47153 * 59.99387 * 10 9 7 26 26 H 1.08998 * 109.46833 * 300.00262 * 10 9 7 27 27 H 0.97001 * 119.99903 * 359.97438 * 13 11 10 28 28 H 1.09000 * 109.47054 * 179.97438 * 16 14 13 29 29 H 1.09001 * 109.46997 * 299.99697 * 16 14 13 30 30 H 1.09000 * 109.47140 * 299.99954 * 17 16 14 31 31 H 1.09002 * 109.47045 * 180.02562 * 17 16 14 32 32 H 1.08993 * 109.47839 * 180.02562 * 18 17 16 33 33 H 1.09000 * 109.47160 * 59.99666 * 18 17 16 34 34 H 1.09001 * 109.46998 * 179.97438 * 19 18 17 35 35 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 36 36 H 1.08998 * 109.47140 * 55.00356 * 22 20 19 37 37 H 1.09000 * 109.47097 * 175.00271 * 22 20 19 38 38 H 1.00899 * 111.00203 * 180.02562 * 23 22 20 39 39 H 1.00899 * 110.99910 * 303.95762 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7281 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3432 0.0018 14 6 2.3303 -7.7151 0.0019 15 1 1.4144 -7.7601 0.5910 16 6 2.0343 -8.1490 -1.4351 17 6 3.3201 -8.0859 -2.2620 18 6 4.3653 -9.0219 -1.6518 19 6 4.6613 -8.5880 -0.2147 20 6 3.3756 -8.6510 0.6121 21 1 2.9933 -9.6718 0.6122 22 6 3.6717 -8.2178 2.0492 23 7 4.5836 -9.1851 2.6744 24 1 -0.4850 0.8400 -0.0004 25 1 3.1245 -3.7314 0.8905 26 1 3.1244 -3.7314 -0.8894 27 1 3.8008 -6.1836 0.0015 28 1 1.6525 -9.1699 -1.4351 29 1 1.2896 -7.4822 -1.8699 30 1 3.7023 -7.0652 -2.2621 31 1 3.1091 -8.3946 -3.2859 32 1 5.2815 -8.9767 -2.2406 33 1 3.9831 -10.0427 -1.6517 34 1 5.4057 -9.2550 0.2202 35 1 5.0436 -7.5672 -0.2148 36 1 4.1365 -7.2319 2.0430 37 1 2.7413 -8.1772 2.6156 38 1 4.7943 -8.9212 3.6251 39 1 4.2030 -10.1187 2.6345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011774.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:59 Heat of formation + Delta-G solvation = -87.099001 kcal Electronic energy + Delta-G solvation = -19141.703559 eV Core-core repulsion = 16208.093892 eV Total energy + Delta-G solvation = -2933.609667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.35498 -39.23509 -35.55229 -34.69529 -34.57454 -31.74271 -31.20205 -29.62028 -27.65694 -25.48331 -23.55358 -22.35893 -21.85816 -20.02851 -19.88399 -18.03460 -17.20670 -16.88531 -16.68711 -16.59220 -15.91290 -15.71105 -15.41759 -15.16257 -14.92159 -14.67103 -14.51159 -13.75869 -13.62648 -13.17191 -13.13171 -13.04901 -12.89752 -12.85987 -12.65389 -12.56950 -11.86971 -11.73070 -11.39200 -11.25845 -11.14603 -10.97703 -10.89727 -10.28188 -10.01011 -9.57332 -8.66990 -8.35136 -6.13182 1.27026 1.42105 1.46944 1.57595 1.64122 2.26310 2.32978 2.99068 3.31851 3.44725 3.74021 3.82917 3.95040 4.03187 4.17104 4.27980 4.32777 4.41777 4.49351 4.52755 4.56794 4.66637 4.69128 4.75188 4.95963 5.03185 5.15671 5.25746 5.29893 5.35149 5.41226 5.50198 5.52240 5.63049 6.19313 6.21503 6.52515 6.61819 7.06189 7.27477 8.74166 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028166 B = 0.003931 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.876129 B = 7121.354432 C = 7341.585656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.258 1.258 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.149 6.149 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.703 5.703 14 C 0.152 3.848 15 H 0.063 0.937 16 C -0.127 4.127 17 C -0.117 4.117 18 C -0.114 4.114 19 C -0.102 4.102 20 C -0.078 4.078 21 H 0.096 0.904 22 C 0.066 3.934 23 N -0.847 5.847 24 H 0.271 0.729 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.410 0.590 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.016 0.984 38 H 0.348 0.652 39 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 -20.299 0.695 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.078 5.922 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.444 6.444 13 N -0.357 5.357 14 C 0.047 3.953 15 H 0.081 0.919 16 C -0.166 4.166 17 C -0.155 4.155 18 C -0.151 4.151 19 C -0.139 4.139 20 C -0.097 4.097 21 H 0.114 0.886 22 C -0.065 4.065 23 N -0.377 5.377 24 H 0.080 0.920 25 H 0.125 0.875 26 H 0.125 0.875 27 H 0.248 0.752 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.161 0.839 39 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 11.358 -20.344 0.141 23.300 hybrid contribution 0.761 1.390 0.659 1.717 sum 12.119 -18.954 0.800 22.511 Atomic orbital electron populations 1.70184 1.07986 1.28614 1.48017 1.26119 0.95945 1.03282 0.93682 0.84956 0.78207 0.76019 0.78818 1.19287 1.20245 1.18206 1.23212 0.95326 0.92080 1.58915 0.90016 1.85553 1.10487 0.99134 1.97033 1.23376 1.03544 0.94729 1.06501 1.20013 0.86299 0.86590 0.75036 1.90682 1.17334 1.86049 1.50288 1.45880 1.09886 1.04916 1.75018 1.20985 0.97181 0.80420 0.96758 0.91917 1.21870 0.98148 1.01710 0.94879 1.21494 0.94996 1.00067 0.98901 1.21541 0.98549 0.99215 0.95819 1.21459 0.96334 1.01813 0.94315 1.21347 0.95418 0.99029 0.93945 0.88598 1.21736 0.94126 0.96528 0.94100 1.58711 1.48621 1.05744 1.24625 0.91984 0.87501 0.87548 0.75184 0.89550 0.94430 0.92989 0.91677 0.91097 0.91028 0.89835 0.92660 0.91656 0.96539 0.83931 0.84028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 2 C 0.01 0.83 5.49 84.86 0.47 1.30 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 7 C -0.55 -31.56 9.50 67.96 0.65 -30.92 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 9 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 10 C -0.13 -5.26 6.16 71.23 0.44 -4.82 16 11 C 0.53 19.98 7.81 87.66 0.68 20.67 16 12 O -0.57 -26.42 15.52 -3.05 -0.05 -26.46 16 13 N -0.70 -18.15 3.62 -442.56 -1.60 -19.75 16 14 C 0.15 3.44 2.23 44.99 0.10 3.54 16 15 H 0.06 1.75 7.58 -2.39 -0.02 1.74 16 16 C -0.13 -2.80 5.60 30.59 0.17 -2.63 16 17 C -0.12 -2.12 5.76 30.59 0.18 -1.95 16 18 C -0.11 -1.53 5.92 30.60 0.18 -1.35 16 19 C -0.10 -1.42 4.92 30.60 0.15 -1.26 16 20 C -0.08 -1.22 2.12 -10.80 -0.02 -1.25 16 21 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 22 C 0.07 1.10 5.94 86.30 0.51 1.61 16 23 N -0.85 -10.67 9.08 -186.73 -1.69 -12.36 16 24 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 25 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 26 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 27 H 0.41 8.46 6.67 -92.71 -0.62 7.84 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.04 1.08 8.14 -2.39 -0.02 1.07 16 30 H 0.05 1.07 7.60 -2.39 -0.02 1.05 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 1.12 7.75 -2.39 -0.02 1.10 16 35 H 0.05 0.82 6.51 -2.39 -0.02 0.80 16 36 H 0.06 1.21 7.61 -2.39 -0.02 1.20 16 37 H 0.02 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.35 3.82 9.08 -89.69 -0.81 3.00 16 39 H 0.35 3.39 8.99 -89.69 -0.81 2.58 16 Total: -1.00 -74.06 325.54 0.14 -73.92 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -1.18 Total: 21.49 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 3.50 Total: -17.05 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -3.01 Total: -88.20 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -74.06 0.14 -73.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011774.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.178 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds