Wall clock time and date at job start Mon Mar 30 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99805 * 2 1 4 4 H 1.48505 * 109.46880 * 240.00350 * 3 2 1 5 5 H 1.48497 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46743 * 120.00517 * 3 2 1 7 7 C 1.38800 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00030 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99645 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47043 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99866 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99788 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99542 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46822 * 35.00535 * 14 13 11 16 16 C 1.52997 * 109.47235 * 275.00190 * 14 13 11 17 17 C 1.53002 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47128 * 59.99726 * 17 16 14 19 19 C 1.52992 * 109.47106 * 300.00123 * 18 17 16 20 20 C 1.52997 * 109.47482 * 60.00162 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99783 * 20 19 18 22 22 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 23 23 N 1.46901 * 109.47143 * 294.99574 * 22 20 19 24 24 H 0.97001 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47629 * 59.99595 * 10 9 7 26 26 H 1.09002 * 109.47165 * 299.99571 * 10 9 7 27 27 H 0.96997 * 120.00436 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47045 * 300.00215 * 16 14 13 29 29 H 1.08998 * 109.47171 * 59.99556 * 16 14 13 30 30 H 1.08996 * 109.46698 * 179.97438 * 17 16 14 31 31 H 1.09002 * 109.46838 * 299.99316 * 17 16 14 32 32 H 1.09002 * 109.47070 * 60.00059 * 18 17 16 33 33 H 1.08996 * 109.46550 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47103 * 299.99915 * 19 18 17 35 35 H 1.08998 * 109.46862 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47170 * 54.99895 * 22 20 19 37 37 H 1.09001 * 109.46952 * 174.99972 * 22 20 19 38 38 H 1.00904 * 110.99880 * 56.05231 * 23 22 20 39 39 H 1.00897 * 111.00586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3304 -7.7151 0.0009 15 1 1.4140 -7.7604 -0.5877 16 6 2.0352 -8.1479 1.4384 17 6 1.4992 -9.5810 1.4396 18 6 2.5445 -10.5170 0.8295 19 6 2.8396 -10.0841 -0.6080 20 6 3.3757 -8.6511 -0.6093 21 1 4.2920 -8.6054 -0.0207 22 6 3.6701 -8.2180 -2.0468 23 7 4.7581 -9.0403 -2.5928 24 1 -0.4850 0.8400 0.0004 25 1 3.1245 -3.7313 0.8894 26 1 3.1244 -3.7313 -0.8906 27 1 3.8009 -6.1835 -0.0014 28 1 2.9516 -8.1026 2.0269 29 1 1.2909 -7.4808 1.8731 30 1 1.2894 -9.8895 2.4637 31 1 0.5829 -9.6267 0.8510 32 1 3.4608 -10.4713 1.4180 33 1 2.1628 -11.5379 0.8308 34 1 1.9233 -10.1298 -1.1966 35 1 3.5840 -10.7512 -1.0427 36 1 2.7757 -8.3480 -2.6559 37 1 3.9672 -7.1693 -2.0567 38 1 4.5331 -10.0222 -2.5351 39 1 4.9719 -8.7733 -3.5421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701011777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:02 Heat of formation + Delta-G solvation = -65.693470 kcal Electronic energy + Delta-G solvation = -18910.485470 eV Core-core repulsion = 15977.804017 eV Total energy + Delta-G solvation = -2932.681454 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04271 -38.13409 -34.82150 -33.97598 -32.41650 -30.41493 -30.35172 -28.13935 -25.47332 -24.89972 -22.64979 -21.15322 -20.35514 -19.88012 -17.82605 -16.74756 -16.27239 -15.78840 -15.23464 -14.82120 -14.79052 -14.66276 -14.16784 -14.01612 -13.66071 -13.41835 -13.18118 -12.94256 -12.49995 -12.31551 -11.95960 -11.76619 -11.32134 -11.22650 -11.03125 -11.02862 -10.79785 -10.73604 -10.57131 -10.33922 -9.80412 -9.31947 -9.04976 -8.96400 -8.79620 -8.22357 -6.48437 -6.20350 -3.90806 3.06146 3.13410 3.24446 3.28495 3.32710 3.74170 4.19207 4.22017 4.49670 4.56800 4.63367 4.96983 5.05132 5.14115 5.14790 5.17677 5.21592 5.29515 5.35816 5.47174 5.55369 5.67674 5.75009 5.75984 5.89086 5.91297 5.95759 5.99878 6.03829 6.16676 6.22820 6.30680 6.72479 6.84741 7.14120 7.60530 7.77447 8.36303 8.66524 9.24855 10.87027 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.003688 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.721624 B = 7589.430679 C = 8121.751234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.154 3.846 15 H 0.086 0.914 16 C -0.130 4.130 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.092 4.092 21 H 0.083 0.917 22 C 0.063 3.937 23 N -0.851 5.851 24 H 0.269 0.731 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.397 0.603 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.028 0.972 37 H 0.077 0.923 38 H 0.337 0.663 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.707 -20.624 -1.260 22.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.392 6.392 13 N -0.388 5.388 14 C 0.048 3.952 15 H 0.104 0.896 16 C -0.169 4.169 17 C -0.155 4.155 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.111 4.111 21 H 0.102 0.898 22 C -0.068 4.068 23 N -0.381 5.381 24 H 0.079 0.921 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.231 0.769 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.966 -20.512 -0.686 21.673 hybrid contribution 1.743 1.097 -0.690 2.172 sum 8.709 -19.415 -1.376 21.323 Atomic orbital electron populations 1.70008 1.05954 1.27544 1.46835 1.24984 0.95015 0.98996 0.94530 0.86232 0.79245 0.81260 0.78813 1.19936 1.20816 1.19931 1.22838 0.94888 0.91721 1.59013 0.90995 1.85376 1.04990 0.96278 1.96718 1.23539 1.06506 0.95538 1.04860 1.20298 0.86579 0.86275 0.74992 1.90693 1.15358 1.85587 1.47591 1.46108 1.09843 1.05304 1.77533 1.20867 0.97288 0.80610 0.96411 0.89608 1.21928 1.01701 0.96526 0.96707 1.21503 0.98570 0.94473 1.00984 1.21541 0.99389 0.98838 0.95876 1.21556 1.00840 0.95277 0.97376 1.21438 0.98785 0.94783 0.96098 0.89833 1.21846 0.92236 0.98215 0.94482 1.58772 1.44244 1.08195 1.26927 0.92144 0.89282 0.89333 0.76864 0.91879 0.90961 0.91795 0.91750 0.91865 0.91994 0.91914 0.91555 0.95339 0.90473 0.84960 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 11 C 0.53 9.92 7.81 -10.98 -0.09 9.84 16 12 O -0.52 -11.71 15.52 5.56 0.09 -11.62 16 13 N -0.73 -9.87 4.30 -53.80 -0.23 -10.10 16 14 C 0.15 1.83 1.90 -67.93 -0.13 1.70 16 15 H 0.09 1.22 7.58 -51.93 -0.39 0.83 16 16 C -0.13 -1.49 5.49 -26.73 -0.15 -1.64 16 17 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 18 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 19 C -0.11 -0.87 4.97 -26.74 -0.13 -1.00 16 20 C -0.09 -0.84 1.97 -90.62 -0.18 -1.02 16 21 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 22 C 0.06 0.59 6.16 -3.82 -0.02 0.57 16 23 N -0.85 -6.75 9.62 -10.37 -0.10 -6.85 16 24 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 25 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 26 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.40 4.38 8.39 -40.82 -0.34 4.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.44 6.68 -51.93 -0.35 0.09 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.81 7.30 -51.93 -0.38 0.43 16 38 H 0.34 2.23 7.25 -39.29 -0.28 1.94 16 39 H 0.34 2.34 9.08 -39.29 -0.36 1.99 16 LS Contribution 327.38 15.07 4.93 4.93 Total: -1.00 -33.39 327.38 -8.71 -42.09 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.30 Total: 4.34 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.59 Total: -9.84 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.40 Total: -42.53 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.39 -8.71 -42.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.600 kcal (2) G-P(sol) polarization free energy of solvation -33.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds