Wall clock time and date at job start Mon Mar 30 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99805 * 2 1 4 4 H 1.48505 * 109.46880 * 240.00350 * 3 2 1 5 5 H 1.48497 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46743 * 120.00517 * 3 2 1 7 7 C 1.38800 * 120.00047 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00030 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99767 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99645 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47043 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99866 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99788 * 179.97438 * 11 10 9 14 14 C 1.46507 * 119.99542 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46822 * 35.00535 * 14 13 11 16 16 C 1.52997 * 109.47235 * 275.00190 * 14 13 11 17 17 C 1.53002 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.47128 * 59.99726 * 17 16 14 19 19 C 1.52992 * 109.47106 * 300.00123 * 18 17 16 20 20 C 1.52997 * 109.47482 * 60.00162 * 19 18 17 21 21 H 1.09002 * 109.47153 * 59.99783 * 20 19 18 22 22 C 1.53000 * 109.47060 * 180.02562 * 20 19 18 23 23 N 1.46901 * 109.47143 * 294.99574 * 22 20 19 24 24 H 0.97001 * 120.00162 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47629 * 59.99595 * 10 9 7 26 26 H 1.09002 * 109.47165 * 299.99571 * 10 9 7 27 27 H 0.96997 * 120.00436 * 359.97438 * 13 11 10 28 28 H 1.09002 * 109.47045 * 300.00215 * 16 14 13 29 29 H 1.08998 * 109.47171 * 59.99556 * 16 14 13 30 30 H 1.08996 * 109.46698 * 179.97438 * 17 16 14 31 31 H 1.09002 * 109.46838 * 299.99316 * 17 16 14 32 32 H 1.09002 * 109.47070 * 60.00059 * 18 17 16 33 33 H 1.08996 * 109.46550 * 179.97438 * 18 17 16 34 34 H 1.09002 * 109.47103 * 299.99915 * 19 18 17 35 35 H 1.08998 * 109.46862 * 180.02562 * 19 18 17 36 36 H 1.08990 * 109.47170 * 54.99895 * 22 20 19 37 37 H 1.09001 * 109.46952 * 174.99972 * 22 20 19 38 38 H 1.00904 * 110.99880 * 56.05231 * 23 22 20 39 39 H 1.00897 * 111.00586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1292 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3304 -7.7151 0.0009 15 1 1.4140 -7.7604 -0.5877 16 6 2.0352 -8.1479 1.4384 17 6 1.4992 -9.5810 1.4396 18 6 2.5445 -10.5170 0.8295 19 6 2.8396 -10.0841 -0.6080 20 6 3.3757 -8.6511 -0.6093 21 1 4.2920 -8.6054 -0.0207 22 6 3.6701 -8.2180 -2.0468 23 7 4.7581 -9.0403 -2.5928 24 1 -0.4850 0.8400 0.0004 25 1 3.1245 -3.7313 0.8894 26 1 3.1244 -3.7313 -0.8906 27 1 3.8009 -6.1835 -0.0014 28 1 2.9516 -8.1026 2.0269 29 1 1.2909 -7.4808 1.8731 30 1 1.2894 -9.8895 2.4637 31 1 0.5829 -9.6267 0.8510 32 1 3.4608 -10.4713 1.4180 33 1 2.1628 -11.5379 0.8308 34 1 1.9233 -10.1298 -1.1966 35 1 3.5840 -10.7512 -1.0427 36 1 2.7757 -8.3480 -2.6559 37 1 3.9672 -7.1693 -2.0567 38 1 4.5331 -10.0222 -2.5351 39 1 4.9719 -8.7733 -3.5421 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701011777.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:01 Heat of formation + Delta-G solvation = -90.206505 kcal Electronic energy + Delta-G solvation = -18911.548435 eV Core-core repulsion = 15977.804017 eV Total energy + Delta-G solvation = -2933.744419 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.19569 -39.33376 -35.54975 -35.20670 -34.58844 -31.70415 -31.12276 -29.40783 -27.65274 -25.66938 -23.62195 -21.94231 -21.61524 -20.87231 -19.77055 -17.87407 -17.69325 -16.88424 -16.67107 -16.45400 -16.02760 -15.80345 -15.39579 -15.02375 -14.70215 -14.55898 -14.33913 -14.28388 -13.81033 -13.53769 -13.17510 -13.01651 -12.86897 -12.63113 -12.59450 -12.19091 -12.00523 -11.76234 -11.50968 -11.39791 -11.21141 -11.13243 -10.80998 -10.28804 -10.03147 -9.62293 -8.67385 -8.34972 -6.13373 1.26542 1.43668 1.46442 1.56470 1.61986 2.25815 2.30014 2.99041 3.31291 3.42639 3.71421 3.85998 3.87794 3.98922 4.20213 4.26829 4.30680 4.36963 4.42990 4.49138 4.50548 4.53177 4.67476 4.80675 4.98947 5.02457 5.11747 5.20718 5.22751 5.26774 5.38300 5.40929 5.48649 5.58933 6.19069 6.20656 6.51824 6.60077 7.06080 7.25948 8.74060 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032637 B = 0.003688 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.721624 B = 7589.430679 C = 8121.751234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.082 0.918 9 S -0.150 6.150 10 C -0.130 4.130 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.709 5.709 14 C 0.153 3.847 15 H 0.060 0.940 16 C -0.127 4.127 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.110 4.110 20 C -0.079 4.079 21 H 0.092 0.908 22 C 0.065 3.935 23 N -0.850 5.850 24 H 0.271 0.729 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.414 0.586 28 H 0.076 0.924 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.019 0.981 37 H 0.065 0.935 38 H 0.347 0.653 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.552 -21.736 -1.284 24.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.697 4.697 8 H 0.100 0.900 9 S 0.077 5.923 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.362 5.362 14 C 0.048 3.952 15 H 0.078 0.922 16 C -0.166 4.166 17 C -0.154 4.154 18 C -0.151 4.151 19 C -0.148 4.148 20 C -0.099 4.099 21 H 0.111 0.889 22 C -0.066 4.066 23 N -0.381 5.381 24 H 0.080 0.920 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.251 0.749 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.037 0.963 37 H 0.083 0.917 38 H 0.161 0.839 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.865 -21.673 -0.714 23.823 hybrid contribution 0.891 1.314 -0.689 1.731 sum 10.757 -20.359 -1.403 23.069 Atomic orbital electron populations 1.70177 1.07992 1.28693 1.47925 1.26127 0.95954 1.03306 0.93661 0.85007 0.77818 0.75668 0.79525 1.18622 1.20346 1.18645 1.23186 0.95356 0.92071 1.59055 0.89955 1.85557 1.10534 0.99172 1.97051 1.23380 1.03539 0.94546 1.06640 1.20046 0.86288 0.86629 0.74969 1.90683 1.17372 1.86056 1.50189 1.45879 1.10080 1.04992 1.75211 1.21008 0.97391 0.79950 0.96819 0.92197 1.21883 1.01336 0.97334 0.96012 1.21501 0.98797 0.93402 1.01663 1.21521 0.99059 0.99005 0.95508 1.21569 1.01172 0.94355 0.97700 1.21349 0.97917 0.94863 0.95739 0.88936 1.21746 0.92335 0.97931 0.94575 1.58744 1.43219 1.08674 1.27497 0.91971 0.87392 0.87372 0.74948 0.90527 0.94447 0.90931 0.92771 0.90941 0.90403 0.92448 0.89482 0.96321 0.91675 0.83880 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.55 -31.69 9.50 67.95 0.65 -31.05 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.46 20.57 -56.49 -1.16 -9.62 16 10 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 11 C 0.53 20.13 7.81 87.66 0.68 20.81 16 12 O -0.56 -26.62 15.52 -3.02 -0.05 -26.67 16 13 N -0.71 -18.49 4.30 -442.52 -1.90 -20.40 16 14 C 0.15 3.58 1.90 44.99 0.09 3.66 16 15 H 0.06 1.75 7.58 -2.39 -0.02 1.74 16 16 C -0.13 -2.85 5.49 30.59 0.17 -2.69 16 17 C -0.12 -2.02 5.92 30.60 0.18 -1.84 16 18 C -0.11 -1.42 5.92 30.59 0.18 -1.24 16 19 C -0.11 -1.42 4.97 30.59 0.15 -1.27 16 20 C -0.08 -1.29 1.97 -10.79 -0.02 -1.31 16 21 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 22 C 0.07 1.12 6.16 86.30 0.53 1.65 16 23 N -0.85 -11.32 9.62 -186.72 -1.80 -13.11 16 24 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 26 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 27 H 0.41 8.26 8.39 -92.71 -0.78 7.48 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.09 0.82 6.68 -2.39 -0.02 0.81 16 36 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 1.27 7.30 -2.39 -0.02 1.25 16 38 H 0.35 3.53 7.25 -89.69 -0.65 2.88 16 39 H 0.35 4.01 9.08 -89.70 -0.81 3.20 16 Total: -1.00 -74.93 327.38 -0.26 -75.20 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -1.18 Total: 21.70 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 3.51 Total: -16.78 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -3.42 Total: -89.69 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.05 Total: -26.67 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.46 SS G_CDS: -1.16 Total: -9.62 kcal Total: -74.93 -0.26 -75.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701011777.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.011 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds