Wall clock time and date at job start Mon Mar 30 2020 05:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45062 * 2 1 4 4 C 1.53038 * 109.45883 * 240.03140 * 2 1 3 5 5 C 1.53190 * 109.31233 * 178.61484 * 4 2 1 6 6 N 1.46924 * 108.77374 * 54.63881 * 5 4 2 7 7 C 1.34776 * 120.63151 * 126.39066 * 6 5 4 8 8 O 1.21290 * 119.99977 * 179.97438 * 7 6 5 9 9 C 1.50701 * 120.00130 * 0.02562 * 7 6 5 10 10 S 1.80995 * 109.47170 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00182 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99499 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00207 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99922 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99918 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46887 * 60.01000 * 15 13 11 17 17 H 1.48498 * 109.46869 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47384 * 300.00521 * 15 13 11 19 19 C 1.46933 * 118.73815 * 306.38539 * 6 5 4 20 20 H 1.09000 * 109.70297 * 173.46732 * 19 6 5 21 21 C 1.52993 * 109.58904 * 293.82687 * 19 6 5 22 22 N 1.46905 * 109.47039 * 304.28710 * 21 19 6 23 23 C 1.53037 * 109.45605 * 119.96631 * 2 1 3 24 24 H 1.09004 * 109.47000 * 300.03603 * 1 2 3 25 25 H 1.09002 * 109.47163 * 60.03097 * 1 2 3 26 26 H 1.08998 * 109.47306 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.50113 * 298.57057 * 4 2 1 28 28 H 1.08999 * 109.49662 * 58.66503 * 4 2 1 29 29 H 1.09001 * 109.58451 * 174.42309 * 5 4 2 30 30 H 1.08999 * 109.58751 * 294.85059 * 5 4 2 31 31 H 1.09003 * 109.46678 * 299.99818 * 9 7 6 32 32 H 1.09002 * 109.46920 * 59.99549 * 9 7 6 33 33 H 0.97001 * 119.99636 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47393 * 184.28991 * 21 19 6 35 35 H 1.08998 * 109.47408 * 64.28637 * 21 19 6 36 36 H 1.00901 * 110.99869 * 56.04956 * 22 21 19 37 37 H 1.00896 * 110.99543 * 180.02562 * 22 21 19 38 38 H 1.09001 * 109.50127 * 61.43283 * 23 2 1 39 39 H 1.09001 * 109.52750 * 301.34664 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9616 -2.2576 0.0000 8 8 5.3641 -2.7112 1.0504 9 6 5.4618 -2.8212 -1.3051 10 16 6.6424 -4.1526 -0.9743 11 6 7.0522 -4.6152 -2.6244 12 1 6.5969 -4.1013 -3.4581 13 6 7.9608 -5.6393 -2.8527 14 7 8.5161 -6.2652 -1.8366 15 14 8.3946 -6.1301 -4.6021 16 1 8.9813 -4.9652 -5.3120 17 1 9.3798 -7.2410 -4.5747 18 1 7.1675 -6.5748 -5.3103 19 6 3.5713 -0.6886 1.2643 20 1 3.9416 -1.2824 2.1000 21 6 4.0527 0.7565 1.4090 22 7 5.5173 0.7977 1.3022 23 6 2.0398 -0.7208 1.2501 24 1 -0.3633 0.5144 0.8897 25 1 -0.3633 0.5134 -0.8903 26 1 -0.3634 -1.0276 0.0005 27 1 1.6977 -1.7557 -1.2383 28 1 1.6572 -0.2208 -2.1398 29 1 3.9416 -1.2846 -2.0984 30 1 3.9143 0.3409 -1.3673 31 1 4.6212 -3.2142 -1.8770 32 1 5.9534 -2.0337 -1.8762 33 1 9.1509 -6.9811 -1.9962 34 1 3.7481 1.1454 2.3806 35 1 3.6136 1.3665 0.6196 36 1 5.8286 0.3831 0.4366 37 1 5.8600 1.7421 1.3951 38 1 1.6977 -1.7556 1.2384 39 1 1.6572 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:46 Heat of formation + Delta-G solvation = -48.115377 kcal Electronic energy + Delta-G solvation = -19466.217589 eV Core-core repulsion = 16534.298378 eV Total energy + Delta-G solvation = -2931.919211 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.31047 -37.61973 -34.68952 -33.69337 -32.40805 -31.08487 -29.36495 -27.96640 -25.46809 -24.93923 -23.42997 -21.98252 -20.63431 -18.45741 -17.66193 -16.68039 -16.09590 -15.53354 -15.32087 -14.88889 -14.78817 -14.38648 -14.21980 -13.96238 -13.59885 -13.26579 -13.08762 -12.76314 -12.46190 -12.18638 -12.11072 -11.89704 -11.72684 -11.32897 -11.04305 -11.02225 -11.00628 -10.75146 -10.61833 -10.43017 -9.78623 -9.23034 -9.04082 -8.74167 -8.36799 -8.19012 -6.46957 -6.19306 -3.89620 2.96024 3.14431 3.24359 3.26849 3.30147 3.62178 4.22265 4.35549 4.53846 4.55372 4.72908 4.93257 4.97825 5.08427 5.15466 5.16264 5.22856 5.33511 5.39141 5.47401 5.54475 5.57988 5.64198 5.67226 5.75105 5.80612 5.89568 5.92081 5.97275 6.13485 6.15528 6.22289 6.74940 7.11396 7.41589 7.60578 7.65407 8.36722 8.66497 9.25657 10.88001 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.004442 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.618219 B = 6302.442992 C = 6775.146986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.130 4.130 5 C 0.106 3.894 6 N -0.615 5.615 7 C 0.535 3.465 8 O -0.507 6.507 9 C -0.150 4.150 10 S -0.058 6.058 11 C -0.536 4.536 12 H 0.071 0.929 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.142 3.858 20 H 0.107 0.893 21 C 0.055 3.945 22 N -0.844 5.844 23 C -0.123 4.123 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.269 0.731 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.344 0.656 37 H 0.337 0.663 38 H 0.070 0.930 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.777 15.950 1.568 21.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.089 0.911 4 C -0.168 4.168 5 C -0.017 4.017 6 N -0.351 5.351 7 C 0.323 3.677 8 O -0.380 6.380 9 C -0.301 4.301 10 S 0.168 5.832 11 C -0.685 4.685 12 H 0.089 0.911 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.200 1.200 19 C 0.038 3.962 20 H 0.125 0.875 21 C -0.077 4.077 22 N -0.374 5.374 23 C -0.162 4.162 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.158 0.842 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.038 14.645 3.847 20.648 hybrid contribution -0.426 0.882 -3.310 3.452 sum -14.464 15.527 0.538 21.227 Atomic orbital electron populations 1.21824 0.95098 1.01931 1.01496 1.21163 0.95576 0.99509 0.94945 0.91055 1.21988 0.95271 1.01673 0.97902 1.21686 0.94116 0.98928 0.87005 1.48138 1.44616 1.36334 1.06057 1.20272 0.77776 0.78424 0.91225 1.90706 1.55883 1.58222 1.33226 1.23559 1.04545 1.04658 0.97330 1.85431 1.49682 1.36924 1.11139 1.22824 1.30574 1.22873 0.92179 0.91092 1.24978 0.95091 0.95247 0.98180 1.70012 1.27528 1.22299 1.30413 0.86245 0.78315 0.78203 0.82854 1.19960 1.20810 1.19975 1.21159 0.92724 0.94078 0.88213 0.87540 1.22127 0.88791 0.96231 1.00543 1.58543 1.09686 1.24855 1.44342 1.21967 0.94703 1.01599 0.97885 0.92735 0.92768 0.92603 0.91160 0.90943 0.89196 0.92206 0.89494 0.89526 0.92145 0.90518 0.95436 0.84214 0.85102 0.91095 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 2 C -0.09 -0.78 2.48 -90.58 -0.22 -1.00 16 3 H 0.07 0.56 6.41 -51.93 -0.33 0.23 16 4 C -0.13 -1.18 5.36 -26.61 -0.14 -1.32 16 5 C 0.11 1.15 5.94 -3.71 -0.02 1.13 16 6 N -0.61 -8.61 1.83 -165.22 -0.30 -8.91 16 7 C 0.54 10.23 7.52 -10.99 -0.08 10.15 16 8 O -0.51 -11.82 15.28 5.55 0.08 -11.73 16 9 C -0.15 -3.07 4.50 36.01 0.16 -2.90 16 10 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 11 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.30 13.22 55.49 0.73 -25.57 16 15 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.14 1.79 2.89 -67.60 -0.20 1.59 16 20 H 0.11 1.68 7.01 -51.93 -0.36 1.32 16 21 C 0.05 0.58 6.05 -3.82 -0.02 0.56 16 22 N -0.84 -10.43 9.62 -10.37 -0.10 -10.53 16 23 C -0.12 -1.21 4.83 -26.61 -0.13 -1.34 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 30 H 0.06 0.57 7.62 -51.93 -0.40 0.17 16 31 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 32 H 0.09 1.63 7.94 -51.91 -0.41 1.22 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.03 0.26 5.75 -51.93 -0.30 -0.04 16 36 H 0.34 4.68 7.99 -39.29 -0.31 4.37 16 37 H 0.34 3.32 9.08 -39.29 -0.36 2.97 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -33.62 321.83 -8.19 -41.82 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.11 Total: 4.30 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: -0.12 Total: -6.83 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.33 Total: -45.01 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.62 -8.19 -41.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.299 kcal (2) G-P(sol) polarization free energy of solvation -33.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds