Wall clock time and date at job start Mon Mar 30 2020 05:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.45062 * 2 1 4 4 C 1.53038 * 109.45883 * 240.03140 * 2 1 3 5 5 C 1.53190 * 109.31233 * 178.61484 * 4 2 1 6 6 N 1.46924 * 108.77374 * 54.63881 * 5 4 2 7 7 C 1.34776 * 120.63151 * 126.39066 * 6 5 4 8 8 O 1.21290 * 119.99977 * 179.97438 * 7 6 5 9 9 C 1.50701 * 120.00130 * 0.02562 * 7 6 5 10 10 S 1.80995 * 109.47170 * 179.97438 * 9 7 6 11 11 C 1.76198 * 100.00182 * 179.97438 * 10 9 7 12 12 H 1.08007 * 119.99499 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00207 * 179.97438 * 11 10 9 14 14 N 1.31633 * 119.99922 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 119.99918 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46887 * 60.01000 * 15 13 11 17 17 H 1.48498 * 109.46869 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47384 * 300.00521 * 15 13 11 19 19 C 1.46933 * 118.73815 * 306.38539 * 6 5 4 20 20 H 1.09000 * 109.70297 * 173.46732 * 19 6 5 21 21 C 1.52993 * 109.58904 * 293.82687 * 19 6 5 22 22 N 1.46905 * 109.47039 * 304.28710 * 21 19 6 23 23 C 1.53037 * 109.45605 * 119.96631 * 2 1 3 24 24 H 1.09004 * 109.47000 * 300.03603 * 1 2 3 25 25 H 1.09002 * 109.47163 * 60.03097 * 1 2 3 26 26 H 1.08998 * 109.47306 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.50113 * 298.57057 * 4 2 1 28 28 H 1.08999 * 109.49662 * 58.66503 * 4 2 1 29 29 H 1.09001 * 109.58451 * 174.42309 * 5 4 2 30 30 H 1.08999 * 109.58751 * 294.85059 * 5 4 2 31 31 H 1.09003 * 109.46678 * 299.99818 * 9 7 6 32 32 H 1.09002 * 109.46920 * 59.99549 * 9 7 6 33 33 H 0.97001 * 119.99636 * 179.97438 * 14 13 11 34 34 H 1.09001 * 109.47393 * 184.28991 * 21 19 6 35 35 H 1.08998 * 109.47408 * 64.28637 * 21 19 6 36 36 H 1.00901 * 110.99869 * 56.04956 * 22 21 19 37 37 H 1.00896 * 110.99543 * 180.02562 * 22 21 19 38 38 H 1.09001 * 109.50127 * 61.43283 * 23 2 1 39 39 H 1.09001 * 109.52750 * 301.34664 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2500 5 6 3.5713 -0.6886 -1.2642 6 7 4.0678 -1.2489 0.0000 7 6 4.9616 -2.2576 0.0000 8 8 5.3641 -2.7112 1.0504 9 6 5.4618 -2.8212 -1.3051 10 16 6.6424 -4.1526 -0.9743 11 6 7.0522 -4.6152 -2.6244 12 1 6.5969 -4.1013 -3.4581 13 6 7.9608 -5.6393 -2.8527 14 7 8.5161 -6.2652 -1.8366 15 14 8.3946 -6.1301 -4.6021 16 1 8.9813 -4.9652 -5.3120 17 1 9.3798 -7.2410 -4.5747 18 1 7.1675 -6.5748 -5.3103 19 6 3.5713 -0.6886 1.2643 20 1 3.9416 -1.2824 2.1000 21 6 4.0527 0.7565 1.4090 22 7 5.5173 0.7977 1.3022 23 6 2.0398 -0.7208 1.2501 24 1 -0.3633 0.5144 0.8897 25 1 -0.3633 0.5134 -0.8903 26 1 -0.3634 -1.0276 0.0005 27 1 1.6977 -1.7557 -1.2383 28 1 1.6572 -0.2208 -2.1398 29 1 3.9416 -1.2846 -2.0984 30 1 3.9143 0.3409 -1.3673 31 1 4.6212 -3.2142 -1.8770 32 1 5.9534 -2.0337 -1.8762 33 1 9.1509 -6.9811 -1.9962 34 1 3.7481 1.1454 2.3806 35 1 3.6136 1.3665 0.6196 36 1 5.8286 0.3831 0.4366 37 1 5.8600 1.7421 1.3951 38 1 1.6977 -1.7556 1.2384 39 1 1.6572 -0.2212 2.1401 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012410.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:45 Heat of formation + Delta-G solvation = -71.805886 kcal Electronic energy + Delta-G solvation = -19467.244886 eV Core-core repulsion = 16534.298378 eV Total energy + Delta-G solvation = -2932.946508 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.46573 -38.89685 -35.55029 -34.83078 -34.57630 -32.06181 -30.71937 -28.99616 -27.64440 -25.79399 -24.31021 -22.95070 -21.70949 -19.91086 -19.24818 -18.12354 -17.11937 -16.88944 -16.81991 -16.23879 -16.08860 -15.89669 -15.22935 -15.01382 -14.59317 -14.47923 -14.42498 -14.12941 -13.56516 -13.43363 -13.17123 -13.05090 -12.86478 -12.73396 -12.62908 -12.55542 -12.17958 -11.83725 -11.72319 -11.39496 -11.23354 -11.12357 -10.75186 -10.24600 -9.76763 -9.41465 -8.66355 -8.33605 -6.12132 1.26176 1.44116 1.46250 1.55847 1.64310 2.10623 2.28346 3.00294 3.25730 3.48190 3.73292 3.80701 3.86707 3.95061 4.08645 4.18403 4.25644 4.35987 4.40307 4.44901 4.54119 4.65844 4.76920 4.81677 4.88726 4.93424 4.98092 5.09873 5.13168 5.24704 5.38966 5.41418 5.53285 5.67170 6.19091 6.19999 6.36556 6.55707 7.07170 7.22436 8.75432 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.004442 C = 0.004132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.618219 B = 6302.442992 C = 6775.146986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.087 0.913 4 C -0.126 4.126 5 C 0.097 3.903 6 N -0.598 5.598 7 C 0.534 3.466 8 O -0.561 6.561 9 C -0.122 4.122 10 S -0.151 6.151 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.138 3.862 20 H 0.066 0.934 21 C 0.061 3.939 22 N -0.864 5.864 23 C -0.117 4.117 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.271 0.729 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.335 0.665 37 H 0.351 0.649 38 H 0.052 0.948 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 18.324 -0.501 24.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.025 4.025 6 N -0.332 5.332 7 C 0.321 3.679 8 O -0.439 6.439 9 C -0.273 4.273 10 S 0.076 5.924 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.186 1.186 17 H -0.204 1.204 18 H -0.186 1.186 19 C 0.035 3.965 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.395 5.395 23 C -0.155 4.155 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.071 0.929 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.894 17.082 1.768 23.399 hybrid contribution 0.041 0.251 -2.603 2.615 sum -15.853 17.333 -0.834 23.504 Atomic orbital electron populations 1.21789 0.93910 1.01735 1.02588 1.21153 0.96469 0.99730 0.93252 0.89448 1.21991 0.93529 1.01356 0.99577 1.22019 0.95611 0.99900 0.84937 1.48085 1.42549 1.34367 1.08229 1.20066 0.78577 0.79406 0.89807 1.90687 1.58267 1.60436 1.34507 1.23363 1.02970 1.02358 0.98625 1.85634 1.52886 1.40959 1.12929 1.23162 1.30874 1.23279 0.92129 0.89967 1.26129 0.94694 0.94976 1.03259 1.70188 1.28349 1.23022 1.33269 0.85008 0.78391 0.78116 0.76504 1.18553 1.20416 1.18641 1.21307 0.94571 0.94684 0.85986 0.91549 1.22132 0.87901 0.94705 1.02266 1.58542 1.11013 1.26032 1.43955 1.21938 0.92323 1.01210 1.00069 0.91828 0.91545 0.93484 0.92699 0.88320 0.89573 0.89668 0.87936 0.87594 0.92009 0.89096 0.92844 0.85221 0.83556 0.92947 0.88867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 71.98 0.66 -0.89 16 2 C -0.09 -1.15 2.48 -10.77 -0.03 -1.18 16 3 H 0.09 0.93 6.41 -2.39 -0.02 0.92 16 4 C -0.13 -1.90 5.36 30.67 0.16 -1.73 16 5 C 0.10 1.85 5.94 86.36 0.51 2.37 16 6 N -0.60 -16.30 1.83 -795.01 -1.46 -17.76 16 7 C 0.53 20.85 7.52 87.66 0.66 21.51 16 8 O -0.56 -27.56 15.28 -3.06 -0.05 -27.60 16 9 C -0.12 -5.01 4.50 71.24 0.32 -4.69 16 10 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 11 C -0.55 -31.54 9.50 67.95 0.65 -30.90 16 12 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 13 C 0.01 0.81 5.49 84.86 0.47 1.28 16 14 N -0.91 -56.72 13.22 21.65 0.29 -56.43 16 15 Si 1.00 43.76 29.55 68.60 2.03 45.79 16 16 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 18 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 19 C 0.14 3.36 2.89 44.97 0.13 3.49 16 20 H 0.07 2.19 7.01 -2.39 -0.02 2.17 16 21 C 0.06 1.16 6.05 86.30 0.52 1.68 16 22 N -0.86 -20.37 9.62 -186.72 -1.80 -22.16 16 23 C -0.12 -2.09 4.83 30.67 0.15 -1.94 16 24 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 25 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.73 5.93 -2.39 -0.01 1.72 16 30 H 0.09 1.27 7.62 -2.39 -0.02 1.25 16 31 H 0.10 3.86 7.69 -2.39 -0.02 3.84 16 32 H 0.11 3.91 7.94 -2.39 -0.02 3.89 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 0.76 5.75 -2.39 -0.01 0.75 16 36 H 0.34 8.84 7.99 -89.69 -0.72 8.12 16 37 H 0.35 6.34 9.08 -89.70 -0.81 5.53 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -76.93 321.83 1.58 -75.35 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -0.47 Total: 23.59 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: 4.20 Total: -11.00 kcal Atomic # 7 Polarization: -93.39 SS G_CDS: -2.97 Total: -96.36 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.05 Total: -27.60 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -76.93 1.58 -75.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012410.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.544 kcal (2) G-P(sol) polarization free energy of solvation -76.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds