Wall clock time and date at job start Mon Mar 30 2020 05:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.46287 * 2 1 4 4 C 1.53045 * 109.44740 * 240.03480 * 2 1 3 5 5 C 1.53623 * 109.23980 * 178.49785 * 4 2 1 6 6 N 1.46924 * 108.54155 * 54.86167 * 5 4 2 7 7 C 1.34777 * 120.63071 * 126.36946 * 6 5 4 8 8 O 1.21285 * 119.99877 * 174.14344 * 7 6 5 9 9 C 1.50702 * 119.99916 * 354.14266 * 7 6 5 10 10 S 1.81001 * 109.46695 * 180.02562 * 9 7 6 11 11 C 1.76208 * 99.99768 * 179.97438 * 10 9 7 12 12 H 1.07994 * 119.99980 * 0.02562 * 11 10 9 13 13 C 1.38796 * 120.00086 * 180.02562 * 11 10 9 14 14 N 1.31635 * 119.99651 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00177 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46937 * 269.99756 * 15 13 11 17 17 H 1.48503 * 109.47108 * 29.99549 * 15 13 11 18 18 H 1.48496 * 109.47194 * 149.99671 * 15 13 11 19 19 C 1.46928 * 118.73788 * 306.08646 * 6 5 4 20 20 H 1.08997 * 109.58434 * 294.08247 * 19 6 5 21 21 C 1.52996 * 109.58660 * 173.65359 * 19 6 5 22 22 N 1.46898 * 109.47086 * 181.85571 * 21 19 6 23 23 C 1.53036 * 109.45721 * 119.97739 * 2 1 3 24 24 H 1.09005 * 109.46987 * 300.02639 * 1 2 3 25 25 H 1.09006 * 109.47012 * 60.02337 * 1 2 3 26 26 H 1.08999 * 109.47525 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.49760 * 298.57934 * 4 2 1 28 28 H 1.09005 * 109.49461 * 58.67067 * 4 2 1 29 29 H 1.08990 * 109.74187 * 295.11762 * 5 4 2 30 30 H 1.09005 * 109.66040 * 174.55239 * 5 4 2 31 31 H 1.08990 * 109.47176 * 60.00178 * 9 7 6 32 32 H 1.09002 * 109.46910 * 299.99983 * 9 7 6 33 33 H 0.97008 * 119.99482 * 179.97438 * 14 13 11 34 34 H 1.08997 * 109.47041 * 301.85112 * 21 19 6 35 35 H 1.08994 * 109.47510 * 61.85383 * 21 19 6 36 36 H 1.00897 * 111.00212 * 184.95222 * 22 21 19 37 37 H 1.00900 * 111.00080 * 308.91098 * 22 21 19 38 38 H 1.09001 * 109.50030 * 61.42315 * 23 2 1 39 39 H 1.08995 * 109.50174 * 301.31871 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0396 -0.7208 -1.2502 5 6 3.5753 -0.6852 -1.2645 6 7 4.0675 -1.2495 -0.0004 7 6 4.9616 -2.2580 -0.0006 8 8 5.4404 -2.6441 1.0446 9 6 5.3662 -2.9060 -1.2997 10 16 6.5702 -4.2168 -0.9706 11 6 6.8593 -4.7860 -2.6130 12 1 6.3435 -4.3257 -3.4426 13 6 7.7498 -5.8260 -2.8404 14 7 8.3789 -6.3868 -1.8291 15 14 8.0568 -6.4290 -4.5815 16 1 7.0946 -7.5122 -4.9071 17 1 7.8766 -5.3040 -5.5340 18 1 9.4433 -6.9501 -4.6877 19 6 3.5714 -0.6892 1.2640 20 1 3.9145 0.3402 1.3670 21 6 4.0912 -1.5258 2.4347 22 7 3.5577 -0.9902 3.6942 23 6 2.0398 -0.7210 1.2499 24 1 -0.3633 0.5143 0.8898 25 1 -0.3633 0.5135 -0.8902 26 1 -0.3634 -1.0276 0.0005 27 1 1.6972 -1.7556 -1.2385 28 1 1.6569 -0.2206 -2.1399 29 1 3.9188 0.3445 -1.3634 30 1 3.9482 -1.2787 -2.0994 31 1 5.8126 -2.1583 -1.9551 32 1 4.4870 -3.3333 -1.7819 33 1 9.0010 -7.1139 -1.9881 34 1 3.7681 -2.5598 2.3139 35 1 5.1802 -1.4854 2.4550 36 1 3.9495 -1.4745 4.4879 37 1 3.7187 0.0036 3.7615 38 1 1.6976 -1.7558 1.2381 39 1 1.6574 -0.2210 2.1398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:52 Heat of formation + Delta-G solvation = -59.069611 kcal Electronic energy + Delta-G solvation = -19394.878747 eV Core-core repulsion = 16462.484525 eV Total energy + Delta-G solvation = -2932.394222 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.59616 -38.68843 -35.93399 -34.94923 -34.59214 -31.81330 -30.68564 -28.74976 -27.66594 -26.01304 -24.33720 -22.81390 -21.35295 -20.40815 -19.48157 -17.97067 -17.35474 -16.88907 -16.75008 -16.30940 -15.91557 -15.63023 -15.10863 -15.01168 -14.81151 -14.60945 -14.37938 -14.17467 -13.63112 -13.36517 -13.19442 -13.01190 -12.89647 -12.75229 -12.62418 -12.51631 -12.06268 -11.88933 -11.71963 -11.39500 -11.25742 -11.15113 -10.61543 -10.27396 -9.65958 -9.33422 -8.67814 -8.35693 -6.13825 1.24757 1.41749 1.44933 1.55169 1.56988 2.06580 2.26682 2.98627 3.22752 3.53078 3.72446 3.82621 3.85677 3.96048 4.09563 4.23015 4.24045 4.29675 4.42833 4.47172 4.65358 4.66316 4.81837 4.88189 4.95057 5.02167 5.08065 5.11212 5.20355 5.27699 5.40147 5.40539 5.56159 5.67901 6.13865 6.18613 6.32869 6.60756 7.05655 7.17026 8.73566 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026566 B = 0.004540 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.741205 B = 6165.753890 C = 7011.926074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.127 4.127 5 C 0.099 3.901 6 N -0.604 5.604 7 C 0.530 3.470 8 O -0.552 6.552 9 C -0.125 4.125 10 S -0.149 6.149 11 C -0.547 4.547 12 H 0.082 0.918 13 C 0.015 3.985 14 N -0.912 5.912 15 Si 0.998 3.002 16 H -0.268 1.268 17 H -0.257 1.257 18 H -0.277 1.277 19 C 0.149 3.851 20 H 0.084 0.916 21 C 0.076 3.924 22 N -0.848 5.848 23 C -0.104 4.104 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.044 0.956 35 H 0.034 0.966 36 H 0.348 0.652 37 H 0.346 0.654 38 H 0.042 0.958 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.139 16.733 1.612 22.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.318 3.682 8 O -0.430 6.430 9 C -0.276 4.276 10 S 0.078 5.922 11 C -0.694 4.694 12 H 0.100 0.900 13 C -0.190 4.190 14 N -0.548 5.548 15 Si 0.820 3.180 16 H -0.193 1.193 17 H -0.181 1.181 18 H -0.203 1.203 19 C 0.046 3.954 20 H 0.102 0.898 21 C -0.055 4.055 22 N -0.381 5.381 23 C -0.143 4.143 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.118 0.882 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.061 0.939 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.030 15.804 2.921 22.004 hybrid contribution 1.015 -0.237 -1.641 1.944 sum -14.015 15.567 1.279 20.985 Atomic orbital electron populations 1.21773 0.94040 1.01602 1.02495 1.21162 0.96490 0.99712 0.93525 0.89677 1.22074 0.93602 1.01229 0.99560 1.22152 0.95460 1.00169 0.84485 1.48179 1.42712 1.34495 1.08546 1.20145 0.78610 0.79587 0.89901 1.90704 1.55192 1.63921 1.33207 1.23405 1.03425 1.01840 0.98898 1.85523 1.52785 1.40096 1.13769 1.23194 1.30723 1.22727 0.92789 0.90028 1.26117 0.94294 0.95439 1.03160 1.70189 1.27088 1.24194 1.33339 0.84961 0.77730 0.78735 0.76608 1.19316 1.18117 1.20258 1.21349 0.95271 0.96780 0.81967 0.89811 1.22079 0.96930 0.97205 0.89247 1.58786 1.66331 1.09091 1.03849 1.21854 0.92459 1.00598 0.99353 0.92033 0.91444 0.93637 0.92828 0.88245 0.88984 0.89453 0.87682 0.88037 0.91994 0.93733 0.94747 0.83953 0.84152 0.93892 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.19 71.98 0.66 -1.17 16 2 C -0.09 -1.36 2.68 -10.77 -0.03 -1.39 16 3 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.13 -2.05 5.38 30.82 0.17 -1.88 16 5 C 0.10 1.96 6.38 86.51 0.55 2.52 16 6 N -0.60 -16.77 2.97 -794.19 -2.36 -19.12 16 7 C 0.53 20.23 7.55 87.66 0.66 20.89 16 8 O -0.55 -25.17 11.42 -3.04 -0.03 -25.20 16 9 C -0.12 -5.08 4.51 71.24 0.32 -4.76 16 10 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 11 C -0.55 -31.40 9.50 67.95 0.65 -30.76 16 12 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.84 5.49 84.86 0.47 1.30 16 14 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 15 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 19 C 0.15 3.62 3.09 44.98 0.14 3.76 16 20 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 21 C 0.08 2.25 4.68 86.30 0.40 2.65 16 22 N -0.85 -18.66 8.97 -186.73 -1.67 -20.33 16 23 C -0.10 -2.10 4.39 30.67 0.13 -1.96 16 24 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.09 1.80 5.93 -2.38 -0.01 1.79 16 31 H 0.10 3.88 7.70 -2.40 -0.02 3.87 16 32 H 0.10 3.85 7.93 -2.39 -0.02 3.83 16 33 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 34 H 0.04 1.65 7.24 -2.39 -0.02 1.63 16 35 H 0.03 1.24 6.24 -2.39 -0.01 1.23 16 36 H 0.35 7.26 9.08 -89.70 -0.81 6.44 16 37 H 0.35 5.94 8.93 -89.69 -0.80 5.14 16 38 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.67 7.77 -2.39 -0.02 1.65 16 Total: -1.00 -73.31 321.06 0.64 -72.66 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.56 Total: 22.59 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.12 Total: -10.79 kcal Atomic # 7 Polarization: -91.68 SS G_CDS: -3.74 Total: -95.42 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.03 Total: -25.20 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -73.31 0.64 -72.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.591 kcal (2) G-P(sol) polarization free energy of solvation -73.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds