Wall clock time and date at job start Mon Mar 30 2020 05:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52688 * 2 1 4 4 C 1.53040 * 109.49729 * 239.91593 * 2 1 3 5 5 C 1.53041 * 109.53761 * 301.41515 * 4 2 1 6 6 C 1.53190 * 109.31193 * 298.63047 * 5 4 2 7 7 N 1.46924 * 108.77385 * 54.63733 * 6 5 4 8 8 C 1.34778 * 120.63329 * 126.37078 * 7 6 5 9 9 O 1.21277 * 120.00431 * 185.90137 * 8 7 6 10 10 C 1.50699 * 119.99923 * 5.89309 * 8 7 6 11 11 S 1.80998 * 109.47368 * 180.02562 * 10 8 7 12 12 C 1.76197 * 100.00188 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00331 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00356 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47331 * 89.99946 * 16 14 12 18 18 H 1.48501 * 109.47094 * 210.00134 * 16 14 12 19 19 H 1.48504 * 109.47156 * 329.99855 * 16 14 12 20 20 C 1.46925 * 118.74117 * 306.38798 * 7 6 5 21 21 H 1.09002 * 109.58970 * 293.82500 * 20 7 6 22 22 C 1.52999 * 109.70762 * 173.46472 * 20 7 6 23 23 N 1.46903 * 109.46800 * 69.29016 * 22 20 7 24 24 H 1.08997 * 109.46918 * 180.08683 * 1 2 3 25 25 H 1.08996 * 109.46793 * 300.08398 * 1 2 3 26 26 H 1.08993 * 109.46898 * 60.08105 * 1 2 3 27 27 H 1.09000 * 109.45956 * 181.39480 * 4 2 1 28 28 H 1.09000 * 109.44917 * 61.42953 * 4 2 1 29 29 H 1.09006 * 109.49398 * 178.68319 * 5 4 2 30 30 H 1.08994 * 109.52638 * 58.60410 * 5 4 2 31 31 H 1.09004 * 109.58572 * 174.42246 * 6 5 4 32 32 H 1.09001 * 109.59221 * 294.85315 * 6 5 4 33 33 H 1.09003 * 109.47154 * 300.00795 * 10 8 7 34 34 H 1.09000 * 109.46830 * 60.00105 * 10 8 7 35 35 H 0.97002 * 119.99387 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47254 * 189.28985 * 22 20 7 37 37 H 1.09004 * 109.46802 * 309.29133 * 22 20 7 38 38 H 1.00891 * 110.99938 * 56.05077 * 23 22 20 39 39 H 1.00904 * 110.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 1.5029 -2.1558 -1.2659 6 6 2.0140 -2.9040 -0.0307 7 7 1.6516 -2.1381 1.1696 8 6 0.9741 -2.7217 2.1780 9 8 0.5874 -2.0552 3.1145 10 6 0.6969 -4.2026 2.1419 11 16 -0.2240 -4.6805 3.6250 12 6 -0.4054 -6.4079 3.3292 13 1 0.0057 -6.8484 2.4328 14 6 -1.0765 -7.2027 4.2481 15 7 -1.5778 -6.6658 5.3404 16 14 -1.2681 -9.0342 3.9349 17 1 -0.1142 -9.7605 4.5233 18 1 -2.5264 -9.5144 4.5605 19 1 -1.3162 -9.2838 2.4718 20 6 2.0414 -0.7238 1.2496 21 1 3.1275 -0.6462 1.2980 22 6 1.4257 -0.0888 2.4981 23 7 2.0699 -0.6417 3.6970 24 1 -0.3633 -1.0276 0.0016 25 1 -0.3633 0.5151 0.8892 26 1 -0.3633 0.5125 -0.8907 27 1 3.1305 -0.7445 -1.2352 28 1 1.6986 -0.1958 -2.1388 29 1 1.8480 -2.6629 -2.1670 30 1 0.4132 -2.1360 -1.2543 31 1 1.5554 -3.8919 0.0139 32 1 3.0979 -3.0043 -0.0866 33 1 0.1076 -4.4404 1.2563 34 1 1.6400 -4.7480 2.1079 35 1 -2.0465 -7.2213 5.9827 36 1 1.5770 0.9902 2.4691 37 1 0.3578 -0.3053 2.5268 38 1 3.0697 -0.5106 3.6632 39 1 1.6807 -0.2374 4.5356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:36 Heat of formation + Delta-G solvation = -8.915266 kcal Electronic energy + Delta-G solvation = -19907.429727 eV Core-core repulsion = 16977.210361 eV Total energy + Delta-G solvation = -2930.219366 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38885 -37.22509 -34.61152 -33.20624 -32.35178 -31.07962 -29.06680 -26.85560 -25.75250 -25.31980 -23.66759 -21.61407 -20.05302 -18.44397 -17.48371 -16.30986 -15.95496 -15.37615 -15.26908 -14.75915 -14.70303 -14.16038 -14.04559 -13.74525 -13.30441 -13.22423 -12.72206 -12.57362 -12.47662 -12.23561 -11.84029 -11.62831 -11.49159 -11.08008 -11.01434 -10.93453 -10.86474 -10.69506 -10.46166 -10.34791 -9.70463 -8.99406 -8.38796 -8.30547 -8.08957 -7.77971 -6.37711 -6.14400 -3.82384 3.12444 3.26390 3.31683 3.35593 3.46020 3.76344 4.28635 4.57208 4.59592 4.69757 4.93017 5.12497 5.14747 5.20533 5.26042 5.30162 5.43934 5.48022 5.58641 5.63951 5.65982 5.70234 5.78692 5.85176 5.87076 6.01606 6.06299 6.07185 6.11565 6.28651 6.33053 6.43271 6.94610 7.61390 7.66491 7.86729 7.92942 8.42477 9.02196 9.31080 10.92944 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.004965 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.159908 B = 5638.548443 C = 6245.060013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.074 0.926 4 C -0.112 4.112 5 C -0.139 4.139 6 C 0.110 3.890 7 N -0.614 5.614 8 C 0.526 3.474 9 O -0.462 6.462 10 C -0.148 4.148 11 S -0.058 6.058 12 C -0.534 4.534 13 H 0.070 0.930 14 C 0.073 3.927 15 N -0.869 5.869 16 Si 0.916 3.084 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.159 3.841 21 H 0.060 0.940 22 C 0.074 3.926 23 N -0.812 5.812 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.267 0.733 36 H 0.005 0.995 37 H 0.101 0.899 38 H 0.314 0.686 39 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 12.994 -13.021 20.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.177 4.177 6 C -0.014 4.014 7 N -0.352 5.352 8 C 0.312 3.688 9 O -0.331 6.331 10 C -0.299 4.299 11 S 0.169 5.831 12 C -0.682 4.682 13 H 0.088 0.912 14 C -0.136 4.136 15 N -0.504 5.504 16 Si 0.742 3.258 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.198 1.198 20 C 0.054 3.946 21 H 0.077 0.923 22 C -0.056 4.056 23 N -0.342 5.342 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.078 0.922 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.023 0.977 37 H 0.119 0.881 38 H 0.125 0.875 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.204 13.247 -11.660 19.062 hybrid contribution 0.815 -1.061 -1.271 1.845 sum 8.019 12.186 -12.931 19.494 Atomic orbital electron populations 1.21870 0.94571 1.02655 1.01291 1.21502 0.96974 0.98920 0.94826 0.90774 1.21514 1.00246 0.95796 0.97359 1.21983 1.01913 0.95927 0.97865 1.21627 0.99719 0.95657 0.84350 1.47865 1.58933 1.09865 1.18562 1.20012 0.78254 0.89007 0.81506 1.90714 1.46985 1.62852 1.32598 1.23577 1.04539 0.95229 1.06576 1.85305 1.69162 1.07491 1.21188 1.22897 1.41905 0.93585 1.09835 0.91189 1.24963 0.94835 0.99231 0.94524 1.70028 1.34854 1.35991 1.09551 0.86212 0.77752 0.83324 0.78469 1.20331 1.20821 1.19765 1.21115 0.97643 0.81380 0.94434 0.92254 1.22015 1.02180 0.92449 0.88953 1.58942 1.06100 1.65466 1.03724 0.91846 0.92424 0.93128 0.92050 0.91907 0.91124 0.90984 0.89503 0.92165 0.90192 0.90042 0.92330 0.97675 0.88112 0.87476 0.84765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.21 37.16 0.31 -1.32 16 2 C -0.10 -1.03 2.80 -90.50 -0.25 -1.29 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.98 5.43 -26.69 -0.14 -1.12 16 5 C -0.14 -1.33 5.74 -26.61 -0.15 -1.49 16 6 C 0.11 1.30 6.32 -3.71 -0.02 1.27 16 7 N -0.61 -8.89 2.41 -165.22 -0.40 -9.29 16 8 C 0.53 10.01 7.40 -10.99 -0.08 9.92 16 9 O -0.46 -9.86 9.95 5.56 0.06 -9.81 16 10 C -0.15 -3.13 4.57 36.01 0.16 -2.96 16 11 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 12 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 13 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 14 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 15 N -0.87 -26.55 13.22 55.49 0.73 -25.81 16 16 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 C 0.16 1.98 2.77 -67.60 -0.19 1.79 16 21 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 22 C 0.07 1.03 4.58 -3.82 -0.02 1.01 16 23 N -0.81 -12.23 6.75 -10.37 -0.07 -12.30 16 24 H 0.06 0.82 5.97 -51.93 -0.31 0.51 16 25 H 0.06 0.67 6.57 -51.93 -0.34 0.33 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.77 6.34 -51.93 -0.33 0.44 16 31 H 0.09 1.08 5.97 -51.93 -0.31 0.77 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 1.59 7.44 -51.91 -0.39 1.20 16 34 H 0.08 1.66 8.13 -51.92 -0.42 1.23 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.01 0.07 8.13 -51.93 -0.42 -0.36 16 37 H 0.10 1.68 5.08 -51.93 -0.26 1.42 16 38 H 0.31 4.07 8.97 -39.30 -0.35 3.72 16 39 H 0.34 4.94 9.08 -39.29 -0.36 4.58 16 LS Contribution 311.36 15.07 4.69 4.69 Total: -1.00 -32.99 311.36 -8.41 -41.40 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -6.00 Total: 5.57 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.19 Total: -7.35 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.27 Total: -47.40 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.06 Total: -9.81 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.99 -8.41 -41.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.480 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds