Wall clock time and date at job start Mon Mar 30 2020 05:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.52688 * 2 1 4 4 C 1.53040 * 109.49729 * 239.91593 * 2 1 3 5 5 C 1.53041 * 109.53761 * 301.41515 * 4 2 1 6 6 C 1.53190 * 109.31193 * 298.63047 * 5 4 2 7 7 N 1.46924 * 108.77385 * 54.63733 * 6 5 4 8 8 C 1.34778 * 120.63329 * 126.37078 * 7 6 5 9 9 O 1.21277 * 120.00431 * 185.90137 * 8 7 6 10 10 C 1.50699 * 119.99923 * 5.89309 * 8 7 6 11 11 S 1.80998 * 109.47368 * 180.02562 * 10 8 7 12 12 C 1.76197 * 100.00188 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99826 * 0.02562 * 12 11 10 14 14 C 1.38796 * 120.00331 * 180.02562 * 12 11 10 15 15 N 1.31635 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00356 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47331 * 89.99946 * 16 14 12 18 18 H 1.48501 * 109.47094 * 210.00134 * 16 14 12 19 19 H 1.48504 * 109.47156 * 329.99855 * 16 14 12 20 20 C 1.46925 * 118.74117 * 306.38798 * 7 6 5 21 21 H 1.09002 * 109.58970 * 293.82500 * 20 7 6 22 22 C 1.52999 * 109.70762 * 173.46472 * 20 7 6 23 23 N 1.46903 * 109.46800 * 69.29016 * 22 20 7 24 24 H 1.08997 * 109.46918 * 180.08683 * 1 2 3 25 25 H 1.08996 * 109.46793 * 300.08398 * 1 2 3 26 26 H 1.08993 * 109.46898 * 60.08105 * 1 2 3 27 27 H 1.09000 * 109.45956 * 181.39480 * 4 2 1 28 28 H 1.09000 * 109.44917 * 61.42953 * 4 2 1 29 29 H 1.09006 * 109.49398 * 178.68319 * 5 4 2 30 30 H 1.08994 * 109.52638 * 58.60410 * 5 4 2 31 31 H 1.09004 * 109.58572 * 174.42246 * 6 5 4 32 32 H 1.09001 * 109.59221 * 294.85315 * 6 5 4 33 33 H 1.09003 * 109.47154 * 300.00795 * 10 8 7 34 34 H 1.09000 * 109.46830 * 60.00105 * 10 8 7 35 35 H 0.97002 * 119.99387 * 180.02562 * 15 14 12 36 36 H 1.08997 * 109.47254 * 189.28985 * 22 20 7 37 37 H 1.09004 * 109.46802 * 309.29133 * 22 20 7 38 38 H 1.00891 * 110.99938 * 56.05077 * 23 22 20 39 39 H 1.00904 * 110.99599 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7232 -1.2483 5 6 1.5029 -2.1558 -1.2659 6 6 2.0140 -2.9040 -0.0307 7 7 1.6516 -2.1381 1.1696 8 6 0.9741 -2.7217 2.1780 9 8 0.5874 -2.0552 3.1145 10 6 0.6969 -4.2026 2.1419 11 16 -0.2240 -4.6805 3.6250 12 6 -0.4054 -6.4079 3.3292 13 1 0.0057 -6.8484 2.4328 14 6 -1.0765 -7.2027 4.2481 15 7 -1.5778 -6.6658 5.3404 16 14 -1.2681 -9.0342 3.9349 17 1 -0.1142 -9.7605 4.5233 18 1 -2.5264 -9.5144 4.5605 19 1 -1.3162 -9.2838 2.4718 20 6 2.0414 -0.7238 1.2496 21 1 3.1275 -0.6462 1.2980 22 6 1.4257 -0.0888 2.4981 23 7 2.0699 -0.6417 3.6970 24 1 -0.3633 -1.0276 0.0016 25 1 -0.3633 0.5151 0.8892 26 1 -0.3633 0.5125 -0.8907 27 1 3.1305 -0.7445 -1.2352 28 1 1.6986 -0.1958 -2.1388 29 1 1.8480 -2.6629 -2.1670 30 1 0.4132 -2.1360 -1.2543 31 1 1.5554 -3.8919 0.0139 32 1 3.0979 -3.0043 -0.0866 33 1 0.1076 -4.4404 1.2563 34 1 1.6400 -4.7480 2.1079 35 1 -2.0465 -7.2213 5.9827 36 1 1.5770 0.9902 2.4691 37 1 0.3578 -0.3053 2.5268 38 1 3.0697 -0.5106 3.6632 39 1 1.6807 -0.2374 4.5356 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:35 Heat of formation + Delta-G solvation = -31.567625 kcal Electronic energy + Delta-G solvation = -19908.412007 eV Core-core repulsion = 16977.210361 eV Total energy + Delta-G solvation = -2931.201646 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54301 -38.44900 -35.71461 -34.57070 -34.31270 -32.04372 -30.62461 -27.90138 -27.56832 -26.69252 -24.67880 -22.63374 -21.25436 -19.83408 -19.17099 -17.66596 -17.09283 -16.86110 -16.60661 -16.34154 -16.03103 -15.44783 -15.28281 -14.93950 -14.65316 -14.43959 -14.20307 -13.91855 -13.50070 -13.31488 -13.24676 -13.10858 -12.87966 -12.69306 -12.57653 -12.37617 -11.97632 -11.71138 -11.67143 -11.30659 -11.22270 -11.12227 -10.18706 -9.81188 -9.45545 -8.94136 -8.59328 -8.32366 -6.08057 1.30529 1.42150 1.49122 1.61242 1.98900 2.26133 2.35013 3.01135 3.34330 3.62244 3.68883 3.89322 4.06239 4.10563 4.23280 4.29056 4.35522 4.36110 4.49701 4.54071 4.60696 4.67558 4.75113 4.82735 4.89839 5.01105 5.10107 5.22874 5.23867 5.27258 5.34622 5.42725 5.54983 5.86132 6.21377 6.51392 6.62249 6.80294 7.08795 7.60172 8.76705 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.004965 C = 0.004482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.159908 B = 5638.548443 C = 6245.060013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 H 0.096 0.904 4 C -0.107 4.107 5 C -0.134 4.134 6 C 0.101 3.899 7 N -0.604 5.604 8 C 0.522 3.478 9 O -0.493 6.493 10 C -0.123 4.123 11 S -0.139 6.139 12 C -0.549 4.549 13 H 0.076 0.924 14 C 0.015 3.985 15 N -0.911 5.911 16 Si 0.996 3.004 17 H -0.268 1.268 18 H -0.276 1.276 19 H -0.260 1.260 20 C 0.156 3.844 21 H 0.075 0.925 22 C 0.079 3.921 23 N -0.832 5.832 24 H 0.038 0.962 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.325 0.675 39 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.731 13.000 -15.646 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.115 0.885 4 C -0.145 4.145 5 C -0.172 4.172 6 C -0.021 4.021 7 N -0.340 5.340 8 C 0.308 3.692 9 O -0.365 6.365 10 C -0.275 4.275 11 S 0.088 5.912 12 C -0.697 4.697 13 H 0.094 0.906 14 C -0.190 4.190 15 N -0.548 5.548 16 Si 0.818 3.182 17 H -0.193 1.193 18 H -0.201 1.201 19 H -0.184 1.184 20 C 0.053 3.947 21 H 0.093 0.907 22 C -0.052 4.052 23 N -0.363 5.363 24 H 0.057 0.943 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.137 0.863 39 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.757 13.276 -14.334 21.410 hybrid contribution 0.389 -0.963 -0.507 1.156 sum 9.145 12.312 -14.841 21.343 Atomic orbital electron populations 1.21836 0.95651 1.01121 1.01537 1.21514 0.95927 0.99990 0.94189 0.88543 1.21518 1.01050 0.94812 0.97071 1.21957 1.01083 0.96722 0.97429 1.21898 1.00939 0.95242 0.84056 1.47789 1.57245 1.10970 1.18026 1.19712 0.79103 0.87977 0.82439 1.90729 1.48590 1.62993 1.34205 1.23417 1.03665 0.97386 1.03024 1.85412 1.71159 1.08345 1.26281 1.23222 1.42269 0.93897 1.10302 0.90564 1.26081 0.94053 1.04859 0.93979 1.70187 1.35688 1.38172 1.10708 0.84995 0.78032 0.76194 0.79011 1.19302 1.20137 1.18357 1.21343 0.98367 0.79996 0.95032 0.90690 1.21898 1.00235 0.93780 0.89269 1.58884 1.06971 1.66246 1.04180 0.94264 0.93793 0.91279 0.90588 0.90110 0.88775 0.92380 0.90554 0.90164 0.89145 0.89297 0.92053 0.95434 0.91437 0.86261 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.21 71.98 0.59 -2.41 16 2 C -0.10 -1.66 2.80 -10.71 -0.03 -1.69 16 3 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 4 C -0.11 -1.44 5.43 30.62 0.17 -1.27 16 5 C -0.13 -2.17 5.74 30.67 0.18 -1.99 16 6 C 0.10 2.15 6.32 86.36 0.55 2.70 16 7 N -0.60 -16.79 2.41 -795.02 -1.91 -18.71 16 8 C 0.52 20.12 7.40 87.66 0.65 20.76 16 9 O -0.49 -21.80 9.95 -3.02 -0.03 -21.83 16 10 C -0.12 -5.28 4.57 71.24 0.33 -4.96 16 11 S -0.14 -7.96 20.57 -56.49 -1.16 -9.12 16 12 C -0.55 -32.40 9.50 67.95 0.65 -31.75 16 13 H 0.08 4.23 7.80 -2.91 -0.02 4.21 16 14 C 0.01 0.87 5.49 84.86 0.47 1.34 16 15 N -0.91 -56.97 13.22 21.65 0.29 -56.68 16 16 Si 1.00 44.60 29.55 68.60 2.03 46.63 16 17 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 20 C 0.16 3.58 2.77 44.98 0.12 3.71 16 21 H 0.08 1.55 8.12 -2.39 -0.02 1.53 16 22 C 0.08 2.14 4.58 86.30 0.40 2.54 16 23 N -0.83 -25.23 6.75 -186.71 -1.26 -26.49 16 24 H 0.04 1.00 5.97 -2.39 -0.01 0.99 16 25 H 0.04 1.02 6.57 -2.39 -0.02 1.00 16 26 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 28 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 30 H 0.06 1.13 6.34 -2.39 -0.02 1.11 16 31 H 0.08 1.78 5.97 -2.38 -0.01 1.77 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 3.62 7.44 -2.39 -0.02 3.61 16 34 H 0.09 3.62 8.13 -2.39 -0.02 3.60 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.03 0.63 8.13 -2.39 -0.02 0.61 16 37 H 0.07 2.33 5.08 -2.39 -0.01 2.31 16 38 H 0.32 8.25 8.97 -89.70 -0.80 7.44 16 39 H 0.34 10.16 9.08 -89.69 -0.81 9.35 16 Total: -1.00 -73.91 311.36 1.45 -72.46 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: -0.56 Total: 26.77 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.06 Total: -13.02 kcal Atomic # 7 Polarization: -98.99 SS G_CDS: -2.89 Total: -101.88 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.03 Total: -21.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -73.91 1.45 -72.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.893 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds