Wall clock time and date at job start Mon Mar 30 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.52077 * 2 1 4 4 C 1.53039 * 109.50069 * 239.91596 * 2 1 3 5 5 C 1.53045 * 109.53809 * 178.68252 * 4 2 1 6 6 C 1.52761 * 109.38049 * 61.24190 * 5 4 2 7 7 N 1.46930 * 109.00949 * 305.58818 * 6 5 4 8 8 C 1.34782 * 120.62855 * 233.58762 * 7 6 5 9 9 O 1.21281 * 119.99750 * 174.57835 * 8 7 6 10 10 C 1.50695 * 119.99857 * 354.57380 * 8 7 6 11 11 S 1.80999 * 109.46931 * 179.97438 * 10 8 7 12 12 C 1.76199 * 100.00307 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99493 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00223 * 179.97438 * 12 11 10 15 15 N 1.31630 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99953 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47381 * 89.99545 * 16 14 12 18 18 H 1.48501 * 109.47064 * 209.99476 * 16 14 12 19 19 H 1.48504 * 109.47279 * 329.99368 * 16 14 12 20 20 C 1.46927 * 118.73883 * 53.30646 * 7 6 5 21 21 H 1.09006 * 109.58423 * 66.57863 * 20 7 6 22 22 C 1.52999 * 109.58545 * 186.85687 * 20 7 6 23 23 N 1.46904 * 109.47048 * 183.58857 * 22 20 7 24 24 H 1.09000 * 109.47369 * 309.17014 * 1 2 3 25 25 H 1.09006 * 109.46751 * 69.16520 * 1 2 3 26 26 H 1.08998 * 109.47037 * 189.16375 * 1 2 3 27 27 H 1.08994 * 109.45827 * 298.70542 * 4 2 1 28 28 H 1.09001 * 109.45512 * 58.68201 * 4 2 1 29 29 H 1.08995 * 109.49874 * 181.31529 * 5 4 2 30 30 H 1.09004 * 109.49734 * 301.41829 * 5 4 2 31 31 H 1.09002 * 109.51255 * 185.70653 * 6 5 4 32 32 H 1.08995 * 109.43486 * 65.42040 * 6 5 4 33 33 H 1.08994 * 109.47901 * 300.00241 * 10 8 7 34 34 H 1.09005 * 109.47035 * 60.00860 * 10 8 7 35 35 H 0.96996 * 120.00302 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47071 * 303.58771 * 22 20 7 37 37 H 1.09000 * 109.47086 * 63.58620 * 22 20 7 38 38 H 1.00895 * 110.99626 * 65.95672 * 23 22 20 39 39 H 1.00896 * 110.99755 * 189.91382 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5710 -0.6950 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 7 3.5045 -0.8291 1.1697 8 6 4.2811 -0.3854 2.1781 9 8 3.7804 0.1901 3.1210 10 6 5.7713 -0.6046 2.1340 11 16 6.5290 0.1002 3.6190 12 6 8.2203 -0.2879 3.3132 13 1 8.4994 -0.8126 2.4114 14 6 9.1940 0.0817 4.2307 15 7 10.4576 -0.2077 4.0020 16 14 8.7113 0.9899 5.7900 17 1 8.4230 0.0078 6.8659 18 1 9.8266 1.8744 6.2132 19 1 7.5005 1.8097 5.5308 20 6 2.0412 -0.7237 1.2496 21 1 1.6053 -1.7215 1.3007 22 6 1.6516 0.0706 2.4979 23 7 0.1881 0.1012 2.6218 24 1 -0.3634 0.6491 0.7967 25 1 -0.3633 0.3655 -0.9605 26 1 -0.3633 -1.0145 0.1637 27 1 1.6968 -1.7573 -1.2352 28 1 1.6585 -0.2243 -2.1388 29 1 3.9336 -1.1897 -2.1668 30 1 3.9160 0.3389 -1.2539 31 1 5.1896 -1.3159 0.0103 32 1 3.8412 -2.4774 -0.0912 33 1 5.9804 -1.6734 2.0913 34 1 6.1841 -0.1181 1.2501 35 1 11.1380 0.0502 4.6434 36 1 2.0810 -0.4047 3.3797 37 1 2.0305 1.0892 2.4134 38 1 -0.1791 -0.8217 2.7987 39 1 -0.1005 0.7490 3.3395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:42 Heat of formation + Delta-G solvation = -26.634977 kcal Electronic energy + Delta-G solvation = -19596.293122 eV Core-core repulsion = 16665.305372 eV Total energy + Delta-G solvation = -2930.987750 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51971 -37.55927 -35.16536 -33.35618 -32.45190 -31.17474 -29.83011 -26.87706 -25.72557 -25.44396 -23.27813 -21.51833 -20.56074 -19.19194 -17.56514 -16.61550 -16.24715 -15.64984 -15.27839 -14.98659 -14.85194 -14.56352 -14.01022 -13.79156 -13.60731 -13.27438 -12.96238 -12.78681 -12.61603 -12.23561 -11.85532 -11.71118 -11.61906 -11.26985 -11.07034 -11.01855 -10.89147 -10.71182 -10.59435 -10.49377 -9.86597 -9.29892 -9.01846 -8.56248 -8.50741 -8.07466 -6.93199 -6.30273 -4.01977 2.69726 2.90070 3.17056 3.31430 3.48600 3.56985 4.31307 4.45404 4.65358 4.68455 4.76846 4.81736 4.89236 5.08845 5.11062 5.18554 5.31254 5.38660 5.53793 5.59339 5.67282 5.70988 5.74609 5.81042 5.85475 5.98311 6.00421 6.05998 6.14637 6.21863 6.38154 6.65120 6.68874 7.08943 7.38905 7.51462 7.92823 8.40244 8.44789 9.15967 10.79061 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.004792 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.831432 B = 5841.995516 C = 6599.431026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.137 4.137 6 C 0.108 3.892 7 N -0.614 5.614 8 C 0.533 3.467 9 O -0.516 6.516 10 C -0.123 4.123 11 S -0.143 6.143 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.236 1.236 20 C 0.157 3.843 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.851 5.851 24 H 0.100 0.900 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.332 0.668 39 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.748 -2.244 -9.479 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.087 0.913 4 C -0.154 4.154 5 C -0.175 4.175 6 C -0.016 4.016 7 N -0.350 5.350 8 C 0.321 3.679 9 O -0.391 6.391 10 C -0.273 4.273 11 S 0.083 5.917 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.112 4.112 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.160 1.160 20 C 0.054 3.946 21 H 0.083 0.917 22 C -0.066 4.066 23 N -0.382 5.382 24 H 0.119 0.881 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -19.238 -1.125 -8.766 21.171 hybrid contribution 1.028 -0.828 0.332 1.361 sum -18.210 -1.953 -8.434 20.164 Atomic orbital electron populations 1.22042 0.93597 1.02698 1.01949 1.21433 0.96970 0.99368 0.93378 0.91314 1.21649 0.94969 1.00735 0.98077 1.21869 0.96390 1.01656 0.97606 1.21661 0.98980 0.96928 0.83982 1.48150 1.06015 1.62419 1.18405 1.20298 0.88513 0.77550 0.81535 1.90684 1.73555 1.40544 1.34351 1.23355 0.93707 1.05266 1.05011 1.84737 1.05790 1.76056 1.25081 1.22311 0.89278 1.43957 1.11314 0.89429 1.24704 0.94014 0.94587 0.97938 1.69935 0.99979 1.45300 1.36497 0.86735 0.80285 0.81249 0.83575 1.19241 1.19933 1.15958 1.21258 0.78898 0.98578 0.95885 0.91742 1.22505 0.85928 1.01737 0.96386 1.59057 1.12010 1.13503 1.53634 0.88141 0.94529 0.93779 0.92082 0.91881 0.90712 0.91359 0.89165 0.91504 0.88665 0.88607 0.91934 0.91709 0.89995 0.85627 0.84697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.19 37.16 0.30 -1.09 16 2 C -0.09 -0.99 2.34 -90.50 -0.21 -1.21 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.08 5.16 -26.69 -0.14 -1.22 16 5 C -0.14 -1.30 6.07 -26.83 -0.16 -1.47 16 6 C 0.11 1.19 6.30 -3.93 -0.02 1.16 16 7 N -0.61 -8.49 2.98 -165.48 -0.49 -8.99 16 8 C 0.53 9.49 7.62 -10.99 -0.08 9.40 16 9 O -0.52 -10.49 11.28 5.56 0.06 -10.43 16 10 C -0.12 -2.39 4.56 36.00 0.16 -2.22 16 11 S -0.14 -3.60 18.55 -107.50 -1.99 -5.60 16 12 C -0.52 -14.97 10.04 30.94 0.31 -14.66 16 13 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 15 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 16 Si 0.86 21.73 27.74 -169.99 -4.71 17.02 16 17 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 20 C 0.16 1.94 2.77 -67.60 -0.19 1.75 16 21 H 0.06 0.76 8.13 -51.93 -0.42 0.33 16 22 C 0.06 0.85 4.58 -3.82 -0.02 0.84 16 23 N -0.85 -8.39 6.08 -10.37 -0.06 -8.45 16 24 H 0.10 1.04 5.74 -51.93 -0.30 0.74 16 25 H 0.04 0.33 8.12 -51.93 -0.42 -0.09 16 26 H 0.04 0.40 8.11 -51.93 -0.42 -0.02 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.02 5.96 -51.93 -0.31 0.71 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.75 8.12 -51.92 -0.42 1.33 16 34 H 0.10 1.76 7.47 -51.91 -0.39 1.37 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.06 1.04 6.15 -51.93 -0.32 0.72 16 37 H 0.08 1.30 7.28 -51.93 -0.38 0.92 16 38 H 0.33 2.84 9.08 -39.29 -0.36 2.49 16 39 H 0.34 3.07 9.08 -39.29 -0.36 2.71 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -31.59 313.10 -8.06 -39.64 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.21 Total: 3.84 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -0.14 Total: -6.00 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.22 Total: -43.20 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.06 Total: -10.43 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.59 -8.06 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.008 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds