Wall clock time and date at job start Mon Mar 30 2020 05:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.52077 * 2 1 4 4 C 1.53039 * 109.50069 * 239.91596 * 2 1 3 5 5 C 1.53045 * 109.53809 * 178.68252 * 4 2 1 6 6 C 1.52761 * 109.38049 * 61.24190 * 5 4 2 7 7 N 1.46930 * 109.00949 * 305.58818 * 6 5 4 8 8 C 1.34782 * 120.62855 * 233.58762 * 7 6 5 9 9 O 1.21281 * 119.99750 * 174.57835 * 8 7 6 10 10 C 1.50695 * 119.99857 * 354.57380 * 8 7 6 11 11 S 1.80999 * 109.46931 * 179.97438 * 10 8 7 12 12 C 1.76199 * 100.00307 * 179.97438 * 11 10 8 13 13 H 1.08003 * 119.99493 * 0.02562 * 12 11 10 14 14 C 1.38797 * 120.00223 * 179.97438 * 12 11 10 15 15 N 1.31630 * 119.99950 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99953 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47381 * 89.99545 * 16 14 12 18 18 H 1.48501 * 109.47064 * 209.99476 * 16 14 12 19 19 H 1.48504 * 109.47279 * 329.99368 * 16 14 12 20 20 C 1.46927 * 118.73883 * 53.30646 * 7 6 5 21 21 H 1.09006 * 109.58423 * 66.57863 * 20 7 6 22 22 C 1.52999 * 109.58545 * 186.85687 * 20 7 6 23 23 N 1.46904 * 109.47048 * 183.58857 * 22 20 7 24 24 H 1.09000 * 109.47369 * 309.17014 * 1 2 3 25 25 H 1.09006 * 109.46751 * 69.16520 * 1 2 3 26 26 H 1.08998 * 109.47037 * 189.16375 * 1 2 3 27 27 H 1.08994 * 109.45827 * 298.70542 * 4 2 1 28 28 H 1.09001 * 109.45512 * 58.68201 * 4 2 1 29 29 H 1.08995 * 109.49874 * 181.31529 * 5 4 2 30 30 H 1.09004 * 109.49734 * 301.41829 * 5 4 2 31 31 H 1.09002 * 109.51255 * 185.70653 * 6 5 4 32 32 H 1.08995 * 109.43486 * 65.42040 * 6 5 4 33 33 H 1.08994 * 109.47901 * 300.00241 * 10 8 7 34 34 H 1.09005 * 109.47035 * 60.00860 * 10 8 7 35 35 H 0.96996 * 120.00302 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47071 * 303.58771 * 22 20 7 37 37 H 1.09000 * 109.47086 * 63.58620 * 22 20 7 38 38 H 1.00895 * 110.99626 * 65.95672 * 23 22 20 39 39 H 1.00896 * 110.99755 * 189.91382 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0409 -0.7231 -1.2483 5 6 3.5710 -0.6950 -1.2659 6 6 4.1055 -1.4215 -0.0330 7 7 3.5045 -0.8291 1.1697 8 6 4.2811 -0.3854 2.1781 9 8 3.7804 0.1901 3.1210 10 6 5.7713 -0.6046 2.1340 11 16 6.5290 0.1002 3.6190 12 6 8.2203 -0.2879 3.3132 13 1 8.4994 -0.8126 2.4114 14 6 9.1940 0.0817 4.2307 15 7 10.4576 -0.2077 4.0020 16 14 8.7113 0.9899 5.7900 17 1 8.4230 0.0078 6.8659 18 1 9.8266 1.8744 6.2132 19 1 7.5005 1.8097 5.5308 20 6 2.0412 -0.7237 1.2496 21 1 1.6053 -1.7215 1.3007 22 6 1.6516 0.0706 2.4979 23 7 0.1881 0.1012 2.6218 24 1 -0.3634 0.6491 0.7967 25 1 -0.3633 0.3655 -0.9605 26 1 -0.3633 -1.0145 0.1637 27 1 1.6968 -1.7573 -1.2352 28 1 1.6585 -0.2243 -2.1388 29 1 3.9336 -1.1897 -2.1668 30 1 3.9160 0.3389 -1.2539 31 1 5.1896 -1.3159 0.0103 32 1 3.8412 -2.4774 -0.0912 33 1 5.9804 -1.6734 2.0913 34 1 6.1841 -0.1181 1.2501 35 1 11.1380 0.0502 4.6434 36 1 2.0810 -0.4047 3.3797 37 1 2.0305 1.0892 2.4134 38 1 -0.1791 -0.8217 2.7987 39 1 -0.1005 0.7490 3.3395 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012436.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:42 Heat of formation + Delta-G solvation = -48.330411 kcal Electronic energy + Delta-G solvation = -19597.233907 eV Core-core repulsion = 16665.305372 eV Total energy + Delta-G solvation = -2931.928535 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.69363 -38.72891 -36.15141 -34.69422 -34.38074 -32.05797 -31.23374 -28.05483 -27.67944 -26.51766 -24.28496 -22.43938 -21.59547 -20.51961 -19.46331 -17.87592 -17.41309 -17.09780 -16.86085 -16.36746 -15.79539 -15.75895 -15.37264 -15.11019 -14.90014 -14.69808 -14.33398 -13.92534 -13.61250 -13.47182 -13.34506 -13.04706 -12.85085 -12.73264 -12.59653 -12.41540 -11.95076 -11.87586 -11.79172 -11.53544 -11.33772 -11.18665 -10.58400 -10.53035 -9.66903 -9.07542 -9.01114 -8.53113 -6.24007 0.96171 1.29564 1.44168 1.50292 1.52591 2.03155 2.23340 2.66374 2.85236 3.43494 3.74861 3.78234 3.90142 4.00701 4.06248 4.17050 4.27977 4.32641 4.40715 4.49830 4.64515 4.72341 4.88791 4.91107 4.98538 5.06134 5.08272 5.17221 5.29876 5.36957 5.53674 5.64826 5.69192 5.87801 6.09610 6.15295 6.31139 6.62164 6.92052 7.10468 8.59478 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030700 B = 0.004792 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.831432 B = 5841.995516 C = 6599.431026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.046 0.954 4 C -0.113 4.113 5 C -0.133 4.133 6 C 0.098 3.902 7 N -0.604 5.604 8 C 0.531 3.469 9 O -0.548 6.548 10 C -0.108 4.108 11 S -0.172 6.172 12 C -0.530 4.530 13 H 0.061 0.939 14 C 0.047 3.953 15 N -0.917 5.917 16 Si 0.914 3.086 17 H -0.262 1.262 18 H -0.259 1.259 19 H -0.238 1.238 20 C 0.156 3.844 21 H 0.081 0.919 22 C 0.077 3.923 23 N -0.838 5.838 24 H 0.091 0.909 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.277 0.723 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.344 0.656 39 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.715 -2.869 -10.576 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.107 4.107 3 H 0.065 0.935 4 C -0.150 4.150 5 C -0.171 4.171 6 C -0.024 4.024 7 N -0.338 5.338 8 C 0.318 3.682 9 O -0.426 6.426 10 C -0.259 4.259 11 S 0.054 5.946 12 C -0.677 4.677 13 H 0.079 0.921 14 C -0.158 4.158 15 N -0.555 5.555 16 Si 0.736 3.264 17 H -0.187 1.187 18 H -0.183 1.183 19 H -0.161 1.161 20 C 0.053 3.947 21 H 0.099 0.901 22 C -0.054 4.054 23 N -0.369 5.369 24 H 0.110 0.890 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -21.228 -1.771 -9.904 23.492 hybrid contribution 1.552 -0.702 0.540 1.787 sum -19.677 -2.474 -9.364 21.931 Atomic orbital electron populations 1.21961 0.92387 1.03097 1.02172 1.21382 0.97855 0.98085 0.93355 0.93523 1.21643 0.94528 1.01401 0.97460 1.21859 0.96712 1.00849 0.97652 1.21967 0.98798 0.98299 0.83310 1.48177 1.06608 1.60946 1.18040 1.20016 0.87871 0.78021 0.82270 1.90701 1.73783 1.42262 1.35881 1.23326 0.94933 1.05536 1.02077 1.84631 1.03806 1.77040 1.29085 1.22458 0.91474 1.43405 1.10399 0.92076 1.25542 0.93993 0.95358 1.00908 1.70012 1.01015 1.46541 1.37924 0.85872 0.80249 0.80350 0.79920 1.18657 1.18281 1.16150 1.21424 0.77730 0.99389 0.96170 0.90102 1.22120 0.87637 0.99730 0.95869 1.59016 1.09553 1.14433 1.53934 0.89049 0.93599 0.92826 0.90668 0.90651 0.88213 0.92811 0.89621 0.89160 0.87448 0.87516 0.91334 0.94734 0.93004 0.84319 0.84051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.19 71.98 0.59 -1.70 16 2 C -0.09 -1.70 2.34 -10.72 -0.03 -1.72 16 3 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.70 5.16 30.62 0.16 -1.55 16 5 C -0.13 -2.14 6.07 30.53 0.19 -1.96 16 6 C 0.10 1.93 6.30 86.22 0.54 2.47 16 7 N -0.60 -15.88 2.98 -795.84 -2.37 -18.25 16 8 C 0.53 18.78 7.62 87.65 0.67 19.45 16 9 O -0.55 -22.65 11.28 -3.03 -0.03 -22.69 16 10 C -0.11 -4.17 4.56 71.23 0.33 -3.85 16 11 S -0.17 -8.75 18.55 -56.49 -1.05 -9.79 16 12 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 13 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 14 C 0.05 2.79 5.50 84.86 0.47 3.26 16 15 N -0.92 -55.94 13.97 21.65 0.30 -55.63 16 16 Si 0.91 45.08 27.74 68.60 1.90 46.98 16 17 H -0.26 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 19 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 20 C 0.16 3.57 2.77 44.97 0.12 3.69 16 21 H 0.08 1.65 8.13 -2.38 -0.02 1.63 16 22 C 0.08 2.04 4.58 86.30 0.40 2.43 16 23 N -0.84 -15.49 6.08 -186.71 -1.14 -16.63 16 24 H 0.09 1.70 5.74 -2.39 -0.01 1.69 16 25 H 0.04 0.69 8.12 -2.38 -0.02 0.67 16 26 H 0.05 0.79 8.11 -2.39 -0.02 0.77 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.09 1.77 5.96 -2.39 -0.01 1.76 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.11 3.88 8.12 -2.40 -0.02 3.86 16 34 H 0.11 3.88 7.47 -2.39 -0.02 3.86 16 35 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 36 H 0.03 1.13 6.15 -2.40 -0.01 1.12 16 37 H 0.05 1.69 7.28 -2.39 -0.02 1.67 16 38 H 0.34 5.21 9.08 -89.70 -0.81 4.39 16 39 H 0.35 5.93 9.08 -89.70 -0.81 5.12 16 Total: -1.00 -69.29 313.10 1.12 -68.17 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -0.61 Total: 17.61 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.11 Total: -9.78 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -3.20 Total: -90.51 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.03 Total: -22.69 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.05 Total: -9.79 kcal Total: -69.29 1.12 -68.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012436.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.841 kcal (2) G-P(sol) polarization free energy of solvation -69.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds