Wall clock time and date at job start Mon Mar 30 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34780 * 119.99962 * 2 1 4 4 O 1.21285 * 119.99440 * 184.95476 * 3 2 1 5 5 C 1.50690 * 120.00004 * 4.96320 * 3 2 1 6 6 S 1.81005 * 109.47150 * 179.97438 * 5 3 2 7 7 C 1.76201 * 100.00215 * 179.97438 * 6 5 3 8 8 H 1.07996 * 119.99778 * 359.97438 * 7 6 5 9 9 C 1.38794 * 119.99939 * 179.97438 * 7 6 5 10 10 N 1.31633 * 120.00173 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 120.00072 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47103 * 89.99927 * 11 9 7 13 13 H 1.48496 * 109.47044 * 210.00151 * 11 9 7 14 14 H 1.48501 * 109.46802 * 330.00069 * 11 9 7 15 15 C 1.46496 * 119.99956 * 180.02562 * 2 1 3 16 16 H 1.09002 * 110.01940 * 129.30292 * 15 2 1 17 17 C 1.54273 * 110.03253 * 7.91013 * 15 2 1 18 18 C 1.54886 * 104.19809 * 217.05697 * 17 15 2 19 19 C 1.54893 * 102.74592 * 37.94185 * 18 17 15 20 20 C 1.53877 * 110.07566 * 250.72394 * 15 2 1 21 21 H 1.09003 * 110.03076 * 238.59486 * 20 15 2 22 22 C 1.53004 * 110.02757 * 0.02562 * 20 15 2 23 23 N 1.46904 * 109.46937 * 177.78616 * 22 20 15 24 24 H 1.08999 * 109.46924 * 264.36917 * 1 2 3 25 25 H 1.09007 * 109.47203 * 24.36262 * 1 2 3 26 26 H 1.08989 * 109.47760 * 144.36503 * 1 2 3 27 27 H 1.09004 * 109.47240 * 299.99185 * 5 3 2 28 28 H 1.08995 * 109.47809 * 59.99495 * 5 3 2 29 29 H 0.97000 * 119.99912 * 179.97438 * 10 9 7 30 30 H 1.09001 * 110.48553 * 98.37969 * 17 15 2 31 31 H 1.09003 * 110.48258 * 335.73744 * 17 15 2 32 32 H 1.09002 * 110.75751 * 279.63005 * 18 17 15 33 33 H 1.08993 * 110.91448 * 156.32850 * 18 17 15 34 34 H 1.09005 * 110.48706 * 80.73806 * 19 18 17 35 35 H 1.08999 * 110.48571 * 203.37721 * 19 18 17 36 36 H 1.08996 * 109.47552 * 297.78720 * 22 20 15 37 37 H 1.09000 * 109.46890 * 57.79293 * 22 20 15 38 38 H 1.00900 * 110.99896 * 180.02562 * 23 22 20 39 39 H 1.00903 * 110.99790 * 303.95911 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3483 1.1691 -0.0907 5 6 1.3897 2.4698 0.1129 6 16 2.5649 3.8462 0.0851 7 6 1.4501 5.2033 0.2269 8 1 0.3875 5.0241 0.2979 9 6 1.9377 6.5027 0.2475 10 7 3.2329 6.7211 0.1615 11 14 0.7558 7.9415 0.3971 12 1 0.5454 8.2621 1.8318 13 1 1.3260 9.1245 -0.2961 14 1 -0.5435 7.5816 -0.2254 15 6 2.1975 -1.2687 -0.0006 16 1 2.9458 -1.2672 -0.7931 17 6 1.2184 -2.4441 -0.2006 18 6 1.7845 -3.5679 0.7025 19 6 2.2837 -2.7891 1.9449 20 6 2.8748 -1.4882 1.3636 21 1 3.9519 -1.5930 1.2331 22 6 2.5709 -0.3127 2.2947 23 7 3.1785 -0.5595 3.6092 24 1 -0.3633 -0.1008 1.0227 25 1 -0.3634 0.9362 -0.4239 26 1 -0.3634 -0.8351 -0.5987 27 1 0.6982 2.5651 -0.7244 28 1 0.8314 2.4880 1.0489 29 1 3.5736 7.6292 0.1755 30 1 1.2103 -2.7606 -1.2436 31 1 0.2155 -2.1642 0.1220 32 1 2.6110 -4.0799 0.2098 33 1 1.0031 -4.2758 0.9787 34 1 1.4528 -2.5650 2.6139 35 1 3.0530 -3.3574 2.4676 36 1 2.9826 0.6029 1.8703 37 1 1.4918 -0.2079 2.4072 38 1 2.9915 0.2031 4.2429 39 1 2.8613 -1.4362 3.9952 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012440.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:42 Heat of formation + Delta-G solvation = -29.813723 kcal Electronic energy + Delta-G solvation = -19606.128986 eV Core-core repulsion = 16675.003394 eV Total energy + Delta-G solvation = -2931.125591 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47321 -37.74866 -34.85758 -33.81261 -32.42833 -29.91962 -29.03495 -27.53835 -26.30276 -25.45667 -23.69351 -20.68887 -20.36813 -18.45393 -17.60365 -16.79063 -16.48883 -16.04586 -15.65577 -15.07485 -14.80628 -14.37215 -14.04315 -13.87155 -13.23912 -13.18789 -12.93728 -12.74435 -12.63917 -12.05728 -11.83969 -11.76274 -11.29275 -11.24714 -11.06590 -11.02229 -10.76593 -10.73587 -10.62942 -10.42956 -9.80484 -9.32621 -9.06601 -8.64567 -8.36385 -8.21925 -6.49755 -6.21449 -3.92081 2.94406 3.06152 3.21948 3.25944 3.30087 3.60474 4.20181 4.35094 4.38757 4.64779 4.83831 4.98491 5.10221 5.13566 5.17462 5.28424 5.35362 5.39651 5.43389 5.48125 5.52589 5.58895 5.63318 5.71672 5.77387 5.88458 5.93064 5.96572 6.10304 6.12468 6.32613 6.35677 6.73379 7.23966 7.52911 7.56618 7.59646 8.35023 8.58327 9.23742 10.85909 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033107 B = 0.004418 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.552233 B = 6336.095296 C = 6601.278539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.619 5.619 3 C 0.534 3.466 4 O -0.510 6.510 5 C -0.152 4.152 6 S -0.059 6.059 7 C -0.536 4.536 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.150 3.850 16 H 0.083 0.917 17 C -0.138 4.138 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.096 4.096 21 H 0.084 0.916 22 C 0.062 3.938 23 N -0.849 5.849 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.021 0.979 38 H 0.341 0.659 39 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -19.279 2.297 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.356 5.356 3 C 0.322 3.678 4 O -0.384 6.384 5 C -0.302 4.302 6 S 0.168 5.832 7 C -0.684 4.684 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.502 5.502 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.046 3.954 16 H 0.101 0.899 17 C -0.176 4.176 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.116 4.116 21 H 0.103 0.897 22 C -0.068 4.068 23 N -0.378 5.378 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.039 0.961 38 H 0.154 0.846 39 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.916 -19.114 1.743 19.813 hybrid contribution -3.258 0.987 0.580 3.454 sum -8.174 -18.127 2.324 20.020 Atomic orbital electron populations 1.21857 0.80328 1.03341 1.01514 1.47977 1.06517 1.05427 1.75654 1.20226 0.87971 0.84412 0.75168 1.90722 1.13824 1.86702 1.47146 1.23594 1.04627 0.97488 1.04514 1.85424 1.08345 0.93399 1.96052 1.22856 0.94649 0.92403 1.58511 0.91023 1.24981 0.95632 0.98330 0.94561 1.70019 1.11861 1.21654 1.46678 0.86183 0.80301 0.80731 0.78377 1.20279 1.20732 1.19713 1.21630 0.93839 0.82509 0.97405 0.89902 1.22847 0.99616 0.94630 1.00467 1.22438 1.00439 0.96972 0.96089 1.22422 1.00005 0.95943 0.97306 1.22085 1.00985 0.94358 0.94149 0.89740 1.22094 0.95783 0.99682 0.89257 1.58710 1.66529 1.07141 1.05425 0.93061 0.90496 0.90840 0.89349 0.89504 0.92177 0.90984 0.89928 0.91229 0.91416 0.92117 0.91361 0.88960 0.96061 0.84636 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.76 9.10 59.85 0.54 1.31 16 2 N -0.62 -8.70 1.94 -172.65 -0.34 -9.03 16 3 C 0.53 10.07 5.38 -10.99 -0.06 10.01 16 4 O -0.51 -11.54 14.28 5.55 0.08 -11.46 16 5 C -0.15 -3.08 4.76 36.00 0.17 -2.91 16 6 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 10 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 11 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.15 1.89 3.13 -66.81 -0.21 1.68 16 16 H 0.08 1.17 8.02 -51.93 -0.42 0.76 16 17 C -0.14 -1.22 5.71 -25.07 -0.14 -1.36 16 18 C -0.12 -0.97 6.91 -24.74 -0.17 -1.14 16 19 C -0.12 -1.12 5.32 -25.08 -0.13 -1.25 16 20 C -0.10 -1.22 3.01 -89.50 -0.27 -1.49 16 21 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 22 C 0.06 0.91 4.86 -3.82 -0.02 0.89 16 23 N -0.85 -11.10 9.61 -10.37 -0.10 -11.20 16 24 H 0.05 0.49 7.85 -51.93 -0.41 0.08 16 25 H 0.08 0.83 6.26 -51.93 -0.32 0.50 16 26 H 0.07 0.59 5.92 -51.93 -0.31 0.29 16 27 H 0.09 1.67 7.25 -51.91 -0.38 1.29 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.66 5.35 -51.93 -0.28 0.39 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.55 7.71 -51.93 -0.40 0.15 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.75 4.77 -51.93 -0.25 1.51 16 37 H 0.02 0.30 7.32 -51.93 -0.38 -0.08 16 38 H 0.34 4.24 9.08 -39.29 -0.36 3.89 16 39 H 0.33 3.51 7.83 -39.29 -0.31 3.20 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -33.51 315.97 -8.07 -41.58 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.88 Total: 5.48 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.09 Total: -7.21 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.30 Total: -45.70 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.08 Total: -11.46 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.51 -8.07 -41.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012440.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.762 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds