Wall clock time and date at job start Mon Mar 30 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34781 * 119.99853 * 2 1 4 4 O 1.21281 * 119.99680 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.99880 * 0.02562 * 3 2 1 6 6 S 1.81004 * 109.47153 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00013 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00503 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99507 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00479 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99504 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46817 * 90.00275 * 11 9 7 13 13 H 1.48500 * 109.47143 * 210.00003 * 11 9 7 14 14 H 1.48502 * 109.47486 * 330.00316 * 11 9 7 15 15 C 1.46497 * 120.00165 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.01489 * 185.85058 * 15 2 1 17 17 C 1.54261 * 110.03326 * 307.24604 * 15 2 1 18 18 C 1.54889 * 104.19790 * 142.89223 * 17 15 2 19 19 C 1.54886 * 102.74889 * 322.05853 * 18 17 15 20 20 C 1.53871 * 110.02999 * 64.46167 * 15 2 1 21 21 H 1.09006 * 110.03540 * 121.42938 * 20 15 2 22 22 C 1.53006 * 110.03314 * 359.97438 * 20 15 2 23 23 N 1.46901 * 109.47241 * 172.40486 * 22 20 15 24 24 H 1.08995 * 109.47088 * 84.09196 * 1 2 3 25 25 H 1.08999 * 109.46580 * 204.09522 * 1 2 3 26 26 H 1.09003 * 109.46697 * 324.08994 * 1 2 3 27 27 H 1.08997 * 109.47821 * 59.99588 * 5 3 2 28 28 H 1.09000 * 109.47249 * 299.99767 * 5 3 2 29 29 H 0.96994 * 120.00390 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.48899 * 261.57141 * 17 15 2 31 31 H 1.09003 * 110.48915 * 24.07732 * 17 15 2 32 32 H 1.09002 * 110.75396 * 80.36735 * 18 17 15 33 33 H 1.08999 * 110.76019 * 203.74156 * 18 17 15 34 34 H 1.08999 * 110.49113 * 156.62030 * 19 18 17 35 35 H 1.09006 * 110.48505 * 279.26586 * 19 18 17 36 36 H 1.08993 * 109.47057 * 292.40988 * 22 20 15 37 37 H 1.09004 * 109.46684 * 52.40965 * 22 20 15 38 38 H 1.00908 * 110.99384 * 56.04666 * 23 22 20 39 39 H 1.00897 * 111.00284 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4414 5.2082 -0.0002 8 1 0.3762 5.0305 -0.0001 9 6 1.9282 6.5081 -0.0003 10 7 3.2265 6.7248 -0.0009 11 14 0.7406 7.9501 -0.0009 12 1 0.4256 8.3324 1.3991 13 1 1.3621 9.1029 -0.7009 14 1 -0.5098 7.5613 -0.7012 15 6 2.1976 -1.2687 0.0006 16 1 3.2664 -1.0823 0.1049 17 6 1.7022 -2.1644 1.1547 18 6 1.7332 -3.5961 0.5646 19 6 1.2662 -3.3743 -0.8955 20 6 1.9214 -2.0373 -1.3035 21 1 2.8563 -2.2248 -1.8317 22 6 0.9677 -1.2362 -2.1921 23 7 0.8551 -1.8892 -3.5032 24 1 -0.3633 0.1058 -1.0222 25 1 -0.3632 -0.9381 0.4196 26 1 -0.3633 0.8324 0.6028 27 1 0.7590 2.5299 0.8907 28 1 0.7584 2.5302 -0.8892 29 1 3.5666 7.6331 -0.0006 30 1 2.3732 -2.0899 2.0105 31 1 0.6872 -1.8899 1.4420 32 1 2.7445 -4.0022 0.5891 33 1 1.0408 -4.2484 1.0967 34 1 1.6190 -4.1826 -1.5359 35 1 0.1799 -3.2967 -0.9409 36 1 -0.0150 -1.1916 -1.7228 37 1 1.3547 -0.2254 -2.3217 38 1 0.5597 -2.8490 -3.4049 39 1 0.2299 -1.3790 -4.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:44 Heat of formation + Delta-G solvation = -29.421620 kcal Electronic energy + Delta-G solvation = -19386.628887 eV Core-core repulsion = 16455.520299 eV Total energy + Delta-G solvation = -2931.108588 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.40509 -37.96468 -34.52512 -34.26446 -32.42255 -29.89979 -28.89018 -27.81418 -26.62437 -25.45269 -23.44222 -20.88975 -20.37562 -18.73420 -17.70394 -16.87466 -16.40445 -15.88521 -15.46702 -15.28226 -14.80116 -14.56175 -14.28525 -13.87083 -13.25184 -13.16250 -12.93490 -12.66275 -12.53925 -12.17809 -12.02089 -11.70117 -11.38461 -11.27858 -11.05963 -11.01749 -10.82877 -10.75985 -10.74630 -10.65858 -9.79597 -9.31952 -9.05975 -8.80077 -8.39858 -8.21223 -6.49016 -6.20796 -3.91286 2.94903 3.06865 3.22469 3.26342 3.30570 3.61759 4.20999 4.28194 4.37783 4.53373 4.75410 4.92041 5.03757 5.14191 5.18222 5.19983 5.25529 5.34946 5.37168 5.40011 5.47325 5.54055 5.64579 5.71254 5.75155 5.82522 5.88592 5.92217 6.08824 6.14102 6.15787 6.19979 6.74049 6.99465 7.28394 7.56657 7.60290 8.35762 8.58833 9.24368 10.86659 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.004093 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.834410 B = 6839.499715 C = 7071.856977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.615 5.615 3 C 0.533 3.467 4 O -0.515 6.515 5 C -0.149 4.149 6 S -0.062 6.062 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.074 3.926 10 N -0.867 5.867 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.142 3.858 16 H 0.104 0.896 17 C -0.136 4.136 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.102 4.102 21 H 0.086 0.914 22 C 0.061 3.939 23 N -0.853 5.853 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.268 0.732 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.076 0.924 38 H 0.335 0.665 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.834 -20.228 -0.903 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.350 5.350 3 C 0.321 3.679 4 O -0.389 6.389 5 C -0.300 4.300 6 S 0.165 5.835 7 C -0.683 4.683 8 H 0.090 0.910 9 C -0.135 4.135 10 N -0.503 5.503 11 Si 0.745 3.255 12 H -0.203 1.203 13 H -0.207 1.207 14 H -0.197 1.197 15 C 0.037 3.963 16 H 0.122 0.878 17 C -0.175 4.175 18 C -0.160 4.160 19 C -0.157 4.157 20 C -0.122 4.122 21 H 0.104 0.896 22 C -0.069 4.069 23 N -0.383 5.383 24 H 0.081 0.919 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.094 0.906 38 H 0.147 0.853 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.097 -19.914 -0.970 20.849 hybrid contribution -3.271 0.852 0.245 3.389 sum -9.369 -19.062 -0.725 21.252 Atomic orbital electron populations 1.22101 0.80402 1.02864 1.02050 1.47878 1.06419 1.05394 1.75336 1.20345 0.87956 0.84581 0.75015 1.90689 1.13755 1.86708 1.47779 1.23547 1.04504 0.97297 1.04605 1.85413 1.08061 0.93327 1.96690 1.22856 0.94286 0.92243 1.58958 0.90999 1.24985 0.95650 0.98354 0.94545 1.70014 1.11746 1.21649 1.46845 0.86179 0.80277 0.80759 0.78334 1.20281 1.20742 1.19712 1.21717 0.98448 0.82666 0.93460 0.87760 1.22779 1.02102 0.94584 0.97986 1.22437 1.01568 0.96374 0.95625 1.22465 0.99808 0.96992 0.96446 1.22198 0.99956 0.94563 0.95447 0.89609 1.22352 0.97775 0.98420 0.88392 1.58698 1.58967 1.06472 1.14127 0.91919 0.90958 0.91190 0.89332 0.89418 0.92187 0.91053 0.90818 0.91164 0.91468 0.91457 0.91992 0.94065 0.90571 0.85329 0.84759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 7.88 59.85 0.47 1.19 16 2 N -0.61 -8.58 1.71 -172.66 -0.30 -8.88 16 3 C 0.53 10.21 7.60 -10.99 -0.08 10.12 16 4 O -0.52 -11.93 15.22 5.56 0.08 -11.85 16 5 C -0.15 -3.05 4.78 36.00 0.17 -2.88 16 6 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 7 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 10 N -0.87 -26.29 13.22 55.49 0.73 -25.56 16 11 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.14 1.76 3.28 -66.82 -0.22 1.54 16 16 H 0.10 1.58 6.96 -51.93 -0.36 1.22 16 17 C -0.14 -1.32 6.33 -25.08 -0.16 -1.48 16 18 C -0.12 -0.95 6.91 -24.74 -0.17 -1.12 16 19 C -0.12 -0.95 5.68 -25.02 -0.14 -1.09 16 20 C -0.10 -1.09 3.11 -89.44 -0.28 -1.37 16 21 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 22 C 0.06 0.66 4.36 -3.82 -0.02 0.64 16 23 N -0.85 -8.27 9.62 -10.37 -0.10 -8.37 16 24 H 0.06 0.61 5.62 -51.93 -0.29 0.32 16 25 H 0.07 0.59 6.04 -51.93 -0.31 0.28 16 26 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 27 H 0.09 1.68 7.42 -51.92 -0.39 1.29 16 28 H 0.09 1.67 8.11 -51.92 -0.42 1.25 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.67 5.89 -51.93 -0.31 0.37 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.45 7.72 -51.93 -0.40 0.05 16 36 H 0.04 0.39 4.76 -51.93 -0.25 0.14 16 37 H 0.08 1.08 7.28 -51.93 -0.38 0.70 16 38 H 0.33 2.62 8.34 -39.29 -0.33 2.30 16 39 H 0.34 2.90 9.08 -39.29 -0.36 2.54 16 LS Contribution 316.89 15.07 4.78 4.78 Total: -1.00 -33.78 316.89 -8.06 -41.84 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.79 Total: 2.96 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.23 Total: -7.43 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.34 Total: -42.81 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.85 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.78 -8.06 -41.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.416 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds