Wall clock time and date at job start Mon Mar 30 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34781 * 119.99853 * 2 1 4 4 O 1.21281 * 119.99680 * 179.97438 * 3 2 1 5 5 C 1.50694 * 119.99880 * 0.02562 * 3 2 1 6 6 S 1.81004 * 109.47153 * 180.02562 * 5 3 2 7 7 C 1.76199 * 100.00013 * 179.97438 * 6 5 3 8 8 H 1.07994 * 120.00503 * 359.97438 * 7 6 5 9 9 C 1.38807 * 119.99507 * 179.97438 * 7 6 5 10 10 N 1.31622 * 120.00479 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99504 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46817 * 90.00275 * 11 9 7 13 13 H 1.48500 * 109.47143 * 210.00003 * 11 9 7 14 14 H 1.48502 * 109.47486 * 330.00316 * 11 9 7 15 15 C 1.46497 * 120.00165 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.01489 * 185.85058 * 15 2 1 17 17 C 1.54261 * 110.03326 * 307.24604 * 15 2 1 18 18 C 1.54889 * 104.19790 * 142.89223 * 17 15 2 19 19 C 1.54886 * 102.74889 * 322.05853 * 18 17 15 20 20 C 1.53871 * 110.02999 * 64.46167 * 15 2 1 21 21 H 1.09006 * 110.03540 * 121.42938 * 20 15 2 22 22 C 1.53006 * 110.03314 * 359.97438 * 20 15 2 23 23 N 1.46901 * 109.47241 * 172.40486 * 22 20 15 24 24 H 1.08995 * 109.47088 * 84.09196 * 1 2 3 25 25 H 1.08999 * 109.46580 * 204.09522 * 1 2 3 26 26 H 1.09003 * 109.46697 * 324.08994 * 1 2 3 27 27 H 1.08997 * 109.47821 * 59.99588 * 5 3 2 28 28 H 1.09000 * 109.47249 * 299.99767 * 5 3 2 29 29 H 0.96994 * 120.00390 * 180.02562 * 10 9 7 30 30 H 1.09003 * 110.48899 * 261.57141 * 17 15 2 31 31 H 1.09003 * 110.48915 * 24.07732 * 17 15 2 32 32 H 1.09002 * 110.75396 * 80.36735 * 18 17 15 33 33 H 1.08999 * 110.76019 * 203.74156 * 18 17 15 34 34 H 1.08999 * 110.49113 * 156.62030 * 19 18 17 35 35 H 1.09006 * 110.48505 * 279.26586 * 19 18 17 36 36 H 1.08993 * 109.47057 * 292.40988 * 22 20 15 37 37 H 1.09004 * 109.46684 * 52.40965 * 22 20 15 38 38 H 1.00908 * 110.99384 * 56.04666 * 23 22 20 39 39 H 1.00897 * 111.00284 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 0.0006 6 16 2.5615 3.8481 -0.0003 7 6 1.4414 5.2082 -0.0002 8 1 0.3762 5.0305 -0.0001 9 6 1.9282 6.5081 -0.0003 10 7 3.2265 6.7248 -0.0009 11 14 0.7406 7.9501 -0.0009 12 1 0.4256 8.3324 1.3991 13 1 1.3621 9.1029 -0.7009 14 1 -0.5098 7.5613 -0.7012 15 6 2.1976 -1.2687 0.0006 16 1 3.2664 -1.0823 0.1049 17 6 1.7022 -2.1644 1.1547 18 6 1.7332 -3.5961 0.5646 19 6 1.2662 -3.3743 -0.8955 20 6 1.9214 -2.0373 -1.3035 21 1 2.8563 -2.2248 -1.8317 22 6 0.9677 -1.2362 -2.1921 23 7 0.8551 -1.8892 -3.5032 24 1 -0.3633 0.1058 -1.0222 25 1 -0.3632 -0.9381 0.4196 26 1 -0.3633 0.8324 0.6028 27 1 0.7590 2.5299 0.8907 28 1 0.7584 2.5302 -0.8892 29 1 3.5666 7.6331 -0.0006 30 1 2.3732 -2.0899 2.0105 31 1 0.6872 -1.8899 1.4420 32 1 2.7445 -4.0022 0.5891 33 1 1.0408 -4.2484 1.0967 34 1 1.6190 -4.1826 -1.5359 35 1 0.1799 -3.2967 -0.9409 36 1 -0.0150 -1.1916 -1.7228 37 1 1.3547 -0.2254 -2.3217 38 1 0.5597 -2.8490 -3.4049 39 1 0.2299 -1.3790 -4.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012441.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:44 Heat of formation + Delta-G solvation = -53.481370 kcal Electronic energy + Delta-G solvation = -19387.672196 eV Core-core repulsion = 16455.520299 eV Total energy + Delta-G solvation = -2932.151897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.55288 -39.21407 -35.71832 -35.06701 -34.59438 -31.29567 -29.69797 -28.88824 -27.82130 -27.46707 -24.32406 -21.86074 -21.35028 -20.00992 -19.54090 -18.24015 -17.41545 -16.99324 -16.88635 -16.52836 -16.32036 -16.00691 -15.39990 -15.21384 -14.55804 -14.37872 -14.08150 -13.81351 -13.78145 -13.42090 -13.17073 -13.00825 -12.89798 -12.71751 -12.49791 -12.37188 -11.97254 -11.74172 -11.60153 -11.55983 -11.44248 -11.14902 -10.86804 -10.27935 -9.73782 -9.40472 -8.68962 -8.35178 -6.14127 1.24891 1.42187 1.45432 1.55851 1.56489 2.10313 2.26877 2.98983 3.24715 3.46249 3.55876 3.73753 3.81003 4.02212 4.16332 4.22910 4.32902 4.37006 4.43423 4.45720 4.51850 4.54832 4.64017 4.74393 4.77239 4.94147 5.02022 5.06852 5.19029 5.22325 5.31271 5.40565 5.46730 5.65840 6.18837 6.24525 6.29061 6.64603 7.05735 7.14729 8.74252 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033253 B = 0.004093 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.834410 B = 6839.499715 C = 7071.856977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.597 5.597 3 C 0.529 3.471 4 O -0.569 6.569 5 C -0.121 4.121 6 S -0.156 6.156 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.134 3.866 16 H 0.066 0.934 17 C -0.130 4.130 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.098 4.098 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.862 5.862 24 H 0.076 0.924 25 H 0.106 0.894 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.271 0.729 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.037 0.963 38 H 0.349 0.651 39 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.380 -21.841 -0.765 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.330 5.330 3 C 0.317 3.683 4 O -0.448 6.448 5 C -0.272 4.272 6 S 0.071 5.929 7 C -0.693 4.693 8 H 0.101 0.899 9 C -0.191 4.191 10 N -0.549 5.549 11 Si 0.821 3.179 12 H -0.192 1.192 13 H -0.203 1.203 14 H -0.181 1.181 15 C 0.030 3.970 16 H 0.084 0.916 17 C -0.168 4.168 18 C -0.153 4.153 19 C -0.146 4.146 20 C -0.118 4.118 21 H 0.081 0.919 22 C -0.064 4.064 23 N -0.394 5.394 24 H 0.094 0.906 25 H 0.124 0.876 26 H 0.092 0.908 27 H 0.126 0.874 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.162 0.838 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.695 -21.589 -0.836 23.681 hybrid contribution -2.172 1.213 0.174 2.494 sum -11.867 -20.376 -0.661 23.589 Atomic orbital electron populations 1.22449 0.77591 1.04970 1.03358 1.47830 1.08065 1.04262 1.72845 1.20182 0.87286 0.85628 0.75222 1.90670 1.15884 1.87453 1.50794 1.23350 1.02612 0.94961 1.06235 1.85630 1.12805 0.97408 1.97028 1.23187 0.94577 0.92587 1.58972 0.89883 1.26145 0.97598 1.01701 0.93658 1.70186 1.14204 1.22488 1.47977 0.84941 0.77869 0.76237 0.78846 1.19214 1.20321 1.18079 1.21882 0.96535 0.82439 0.96165 0.91591 1.22754 1.02475 0.95177 0.96403 1.22433 1.02225 0.95145 0.95496 1.22422 1.00639 0.95027 0.96507 1.22122 0.99438 0.96112 0.94141 0.91915 1.22220 0.98506 0.96458 0.89257 1.58603 1.59741 1.07411 1.13633 0.90566 0.87575 0.90836 0.87356 0.87731 0.91985 0.91889 0.89228 0.91454 0.89030 0.90386 0.90012 0.91743 0.94463 0.83755 0.83929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.02 7.88 127.77 1.01 2.03 16 2 N -0.60 -16.26 1.71 -818.55 -1.40 -17.66 16 3 C 0.53 20.78 7.60 87.65 0.67 21.45 16 4 O -0.57 -28.04 15.22 -3.03 -0.05 -28.09 16 5 C -0.12 -4.96 4.78 71.23 0.34 -4.62 16 6 S -0.16 -8.89 20.57 -56.49 -1.16 -10.05 16 7 C -0.55 -31.51 9.50 67.96 0.65 -30.86 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 C 0.01 0.78 5.49 84.86 0.47 1.25 16 10 N -0.91 -56.74 13.22 21.65 0.29 -56.45 16 11 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 15 C 0.13 3.30 3.28 45.71 0.15 3.45 16 16 H 0.07 2.15 6.96 -2.39 -0.02 2.13 16 17 C -0.13 -2.24 6.33 31.67 0.20 -2.04 16 18 C -0.12 -1.42 6.91 31.88 0.22 -1.20 16 19 C -0.11 -1.34 5.68 31.71 0.18 -1.16 16 20 C -0.10 -1.99 3.11 -10.03 -0.03 -2.03 16 21 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 22 C 0.07 1.33 4.36 86.30 0.38 1.70 16 23 N -0.86 -15.13 9.62 -186.71 -1.80 -16.92 16 24 H 0.08 1.22 5.62 -2.39 -0.01 1.20 16 25 H 0.11 1.23 6.04 -2.39 -0.01 1.21 16 26 H 0.07 1.32 6.69 -2.39 -0.02 1.30 16 27 H 0.11 4.00 7.42 -2.40 -0.02 3.98 16 28 H 0.10 3.92 8.11 -2.40 -0.02 3.90 16 29 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 30 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.27 5.89 -2.39 -0.01 1.26 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.75 7.72 -2.38 -0.02 0.73 16 36 H 0.06 0.98 4.76 -2.39 -0.01 0.97 16 37 H 0.04 1.05 7.28 -2.38 -0.02 1.03 16 38 H 0.35 4.47 8.34 -89.69 -0.75 3.72 16 39 H 0.35 5.28 9.08 -89.70 -0.81 4.46 16 Total: -1.00 -78.11 316.89 1.64 -76.48 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -0.49 Total: 18.93 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.22 Total: -12.02 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -2.91 Total: -91.04 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.89 SS G_CDS: -1.16 Total: -10.05 kcal Total: -78.11 1.64 -76.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012441.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.997 kcal (2) G-P(sol) polarization free energy of solvation -78.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds