Wall clock time and date at job start Mon Mar 30 2020 05:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70525 * 2 1 4 4 C 1.53196 * 109.58756 * 120.35474 * 2 1 3 5 5 C 1.53035 * 109.30995 * 65.15203 * 4 2 1 6 6 C 1.53042 * 109.54021 * 61.36728 * 5 4 2 7 7 H 1.09004 * 109.49547 * 58.61806 * 6 5 4 8 8 C 1.52994 * 109.49646 * 178.67720 * 6 5 4 9 9 N 1.46901 * 109.46846 * 184.99952 * 8 6 5 10 10 C 1.53191 * 109.31021 * 298.63480 * 6 5 4 11 11 N 1.46924 * 108.77817 * 54.63576 * 10 6 5 12 12 C 1.34766 * 120.63242 * 126.37005 * 11 10 6 13 13 O 1.21286 * 120.00250 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00319 * 0.02562 * 12 11 10 15 15 S 1.81004 * 109.47634 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99924 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00535 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99488 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00474 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46731 * 59.99941 * 20 18 16 22 22 H 1.48495 * 109.47235 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47102 * 300.00403 * 20 18 16 24 24 H 1.08998 * 109.47266 * 299.64657 * 1 2 3 25 25 H 1.09001 * 109.47112 * 59.64402 * 1 2 3 26 26 H 1.08994 * 109.47176 * 179.64351 * 1 2 3 27 27 H 1.09001 * 109.49651 * 185.10369 * 4 2 1 28 28 H 1.09001 * 109.49244 * 305.19941 * 4 2 1 29 29 H 1.09004 * 109.45792 * 181.38956 * 5 4 2 30 30 H 1.09003 * 109.46450 * 301.35739 * 5 4 2 31 31 H 1.08996 * 109.48084 * 305.00156 * 8 6 5 32 32 H 1.09008 * 109.47069 * 65.00760 * 8 6 5 33 33 H 1.00899 * 111.00175 * 56.05271 * 9 8 6 34 34 H 1.00902 * 111.00299 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.58565 * 174.42221 * 10 6 5 36 36 H 1.09005 * 109.58474 * 294.70092 * 10 6 5 37 37 H 1.09003 * 109.47289 * 300.00768 * 14 12 11 38 38 H 1.09005 * 109.46555 * 59.99877 * 14 12 11 39 39 H 0.97002 * 120.00379 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 1.6414 -2.2040 1.1701 6 6 2.2800 -2.8464 -0.0635 7 1 3.3640 -2.7479 -0.0049 8 6 1.9043 -4.3284 -0.1198 9 7 2.6127 -4.9711 -1.2347 10 6 1.7692 -2.1410 -1.3237 11 7 2.0226 -0.6995 -1.1945 12 6 2.6944 -0.0318 -2.1531 13 8 2.8976 1.1580 -2.0345 14 6 3.1932 -0.7634 -3.3726 15 16 4.0498 0.3982 -4.4649 16 6 4.5126 -0.6927 -5.7689 17 1 4.2488 -1.7386 -5.7173 18 6 5.2173 -0.2078 -6.8619 19 7 5.5403 1.0668 -6.9242 20 14 5.7088 -1.3644 -8.2442 21 1 4.4903 -1.9675 -8.8416 22 1 6.4466 -0.6056 -9.2858 23 1 6.5793 -2.4394 -7.7041 24 1 -0.3634 0.5083 0.8931 25 1 -0.3633 0.5194 -0.8868 26 1 -0.3633 -1.0276 -0.0064 27 1 3.1297 -0.6503 1.2913 28 1 1.6075 -0.2783 2.1368 29 1 1.9843 -2.7202 2.0669 30 1 0.5565 -2.2815 1.0991 31 1 2.1862 -4.8107 0.8161 32 1 0.8288 -4.4251 -0.2688 33 1 3.6098 -4.8394 -1.1535 34 1 2.3808 -5.9513 -1.2934 35 1 2.2944 -2.5274 -2.1971 36 1 0.6991 -2.3177 -1.4330 37 1 3.8827 -1.5505 -3.0673 38 1 2.3488 -1.2052 -3.9018 39 1 6.0325 1.4057 -7.6883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701012453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:30 Heat of formation + Delta-G solvation = -49.854690 kcal Electronic energy + Delta-G solvation = -19382.401174 eV Core-core repulsion = 16450.406542 eV Total energy + Delta-G solvation = -2931.994633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.18706 -37.67000 -35.22440 -32.97082 -32.37158 -31.57944 -28.88689 -27.79723 -25.43706 -25.21038 -23.87041 -21.48491 -20.52747 -18.41650 -17.61601 -16.78432 -15.94855 -15.63681 -15.33696 -14.88445 -14.75372 -14.66982 -14.06333 -13.94465 -13.48896 -13.08919 -12.86761 -12.78754 -12.62323 -12.42970 -12.07459 -11.79540 -11.60323 -11.15002 -10.99698 -10.98349 -10.88676 -10.71788 -10.65391 -10.41505 -9.74789 -9.23227 -9.00496 -8.89391 -8.37942 -8.15503 -6.43510 -6.15894 -3.85855 3.02325 3.15445 3.27532 3.30171 3.33379 3.68107 4.22518 4.26059 4.53648 4.65228 4.77596 4.88326 5.01520 5.14209 5.19030 5.23390 5.33662 5.38562 5.42500 5.51287 5.52283 5.60523 5.68083 5.74751 5.83063 5.91623 5.96132 5.99818 6.06825 6.16932 6.24358 6.32806 6.82226 6.89014 7.20543 7.65256 7.70698 8.41265 8.67632 9.29312 10.91523 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.004927 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.285062 B = 5681.900397 C = 6694.884809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 H 0.099 0.901 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.102 4.102 7 H 0.074 0.926 8 C 0.069 3.931 9 N -0.851 5.851 10 C 0.122 3.878 11 N -0.615 5.615 12 C 0.535 3.465 13 O -0.521 6.521 14 C -0.148 4.148 15 S -0.064 6.064 16 C -0.533 4.533 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.869 5.869 20 Si 0.918 3.082 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.072 0.928 33 H 0.343 0.657 34 H 0.342 0.658 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.235 -10.973 16.888 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.117 0.883 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.122 4.122 7 H 0.093 0.907 8 C -0.062 4.062 9 N -0.381 5.381 10 C -0.002 4.002 11 N -0.351 5.351 12 C 0.324 3.676 13 O -0.396 6.396 14 C -0.298 4.298 15 S 0.163 5.837 16 C -0.682 4.682 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.504 5.504 20 Si 0.744 3.256 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.200 1.200 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.247 -8.538 16.480 20.736 hybrid contribution 0.508 -2.845 -0.248 2.900 sum -8.738 -11.383 16.232 21.666 Atomic orbital electron populations 1.22130 0.95401 1.02053 1.02230 1.21079 0.93776 0.97792 0.84200 0.88311 1.21897 1.01620 0.95429 0.97568 1.21564 1.00839 0.95596 0.97196 1.21558 1.01084 0.93900 0.95632 0.90749 1.21782 0.99183 0.93529 0.91734 1.58658 1.13174 1.19242 1.46984 1.21632 1.00692 0.79251 0.98591 1.48209 1.57093 1.09069 1.20735 1.20339 0.76614 0.87337 0.83356 1.90677 1.55932 1.15077 1.77878 1.23538 1.04017 1.04454 0.97802 1.85361 1.69206 1.11500 1.17612 1.22832 1.41966 0.96794 1.06559 0.90960 1.24978 0.95135 0.95565 0.97851 1.70014 1.37189 1.12889 1.30351 0.86241 0.78708 0.80128 0.80522 1.19939 1.20869 1.19958 0.91827 0.92210 0.92324 0.91503 0.90907 0.92010 0.91429 0.95468 0.90917 0.84417 0.84611 0.88349 0.91920 0.89264 0.89324 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.02 37.16 0.34 -1.36 16 2 C 0.14 1.73 3.21 -67.60 -0.22 1.51 16 3 H 0.10 1.49 7.00 -51.93 -0.36 1.13 16 4 C -0.13 -1.27 5.55 -26.61 -0.15 -1.42 16 5 C -0.11 -0.96 4.96 -26.69 -0.13 -1.10 16 6 C -0.10 -0.99 2.48 -90.50 -0.22 -1.21 16 7 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 8 C 0.07 0.55 6.18 -3.83 -0.02 0.53 16 9 N -0.85 -7.25 9.20 -10.37 -0.10 -7.35 16 10 C 0.12 1.49 5.03 -3.71 -0.02 1.47 16 11 N -0.62 -9.25 2.68 -165.22 -0.44 -9.69 16 12 C 0.54 10.71 7.72 -10.99 -0.08 10.62 16 13 O -0.52 -12.35 15.28 5.55 0.08 -12.27 16 14 C -0.15 -3.15 4.50 36.01 0.16 -2.99 16 15 S -0.06 -1.77 20.57 -107.50 -2.21 -3.98 16 16 C -0.53 -15.48 9.50 30.94 0.29 -15.18 16 17 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 18 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 19 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 20 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 21 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.56 5.73 -51.93 -0.30 0.26 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.53 6.51 -51.93 -0.34 0.19 16 31 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.34 2.85 8.99 -39.29 -0.35 2.50 16 34 H 0.34 2.31 9.08 -39.29 -0.36 1.96 16 35 H 0.10 1.34 5.72 -51.93 -0.30 1.05 16 36 H 0.06 0.71 7.49 -51.93 -0.39 0.32 16 37 H 0.09 1.79 7.69 -51.91 -0.40 1.39 16 38 H 0.09 1.79 7.94 -51.91 -0.41 1.38 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 322.86 15.07 4.87 4.87 Total: -1.00 -33.99 322.86 -8.38 -42.37 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -6.13 Total: 2.31 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -0.15 Total: -7.08 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.20 Total: -42.89 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.08 Total: -12.27 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.77 SS G_CDS: -2.21 Total: -3.98 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.99 -8.38 -42.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.489 kcal (2) G-P(sol) polarization free energy of solvation -33.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds