Wall clock time and date at job start Mon Mar 30 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.70525 * 2 1 4 4 C 1.53196 * 109.58756 * 120.35474 * 2 1 3 5 5 C 1.53035 * 109.30995 * 65.15203 * 4 2 1 6 6 C 1.53042 * 109.54021 * 61.36728 * 5 4 2 7 7 H 1.09004 * 109.49547 * 58.61806 * 6 5 4 8 8 C 1.52994 * 109.49646 * 178.67720 * 6 5 4 9 9 N 1.46901 * 109.46846 * 184.99952 * 8 6 5 10 10 C 1.53191 * 109.31021 * 298.63480 * 6 5 4 11 11 N 1.46924 * 108.77817 * 54.63576 * 10 6 5 12 12 C 1.34766 * 120.63242 * 126.37005 * 11 10 6 13 13 O 1.21286 * 120.00250 * 180.02562 * 12 11 10 14 14 C 1.50699 * 120.00319 * 0.02562 * 12 11 10 15 15 S 1.81004 * 109.47634 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99924 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00535 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99488 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00474 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99916 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46731 * 59.99941 * 20 18 16 22 22 H 1.48495 * 109.47235 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47102 * 300.00403 * 20 18 16 24 24 H 1.08998 * 109.47266 * 299.64657 * 1 2 3 25 25 H 1.09001 * 109.47112 * 59.64402 * 1 2 3 26 26 H 1.08994 * 109.47176 * 179.64351 * 1 2 3 27 27 H 1.09001 * 109.49651 * 185.10369 * 4 2 1 28 28 H 1.09001 * 109.49244 * 305.19941 * 4 2 1 29 29 H 1.09004 * 109.45792 * 181.38956 * 5 4 2 30 30 H 1.09003 * 109.46450 * 301.35739 * 5 4 2 31 31 H 1.08996 * 109.48084 * 305.00156 * 8 6 5 32 32 H 1.09008 * 109.47069 * 65.00760 * 8 6 5 33 33 H 1.00899 * 111.00175 * 56.05271 * 9 8 6 34 34 H 1.00902 * 111.00299 * 180.02562 * 9 8 6 35 35 H 1.08999 * 109.58565 * 174.42221 * 10 6 5 36 36 H 1.09005 * 109.58474 * 294.70092 * 10 6 5 37 37 H 1.09003 * 109.47289 * 300.00768 * 14 12 11 38 38 H 1.09005 * 109.46555 * 59.99877 * 14 12 11 39 39 H 0.97002 * 120.00379 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 1.2455 5 6 1.6414 -2.2040 1.1701 6 6 2.2800 -2.8464 -0.0635 7 1 3.3640 -2.7479 -0.0049 8 6 1.9043 -4.3284 -0.1198 9 7 2.6127 -4.9711 -1.2347 10 6 1.7692 -2.1410 -1.3237 11 7 2.0226 -0.6995 -1.1945 12 6 2.6944 -0.0318 -2.1531 13 8 2.8976 1.1580 -2.0345 14 6 3.1932 -0.7634 -3.3726 15 16 4.0498 0.3982 -4.4649 16 6 4.5126 -0.6927 -5.7689 17 1 4.2488 -1.7386 -5.7173 18 6 5.2173 -0.2078 -6.8619 19 7 5.5403 1.0668 -6.9242 20 14 5.7088 -1.3644 -8.2442 21 1 4.4903 -1.9675 -8.8416 22 1 6.4466 -0.6056 -9.2858 23 1 6.5793 -2.4394 -7.7041 24 1 -0.3634 0.5083 0.8931 25 1 -0.3633 0.5194 -0.8868 26 1 -0.3633 -1.0276 -0.0064 27 1 3.1297 -0.6503 1.2913 28 1 1.6075 -0.2783 2.1368 29 1 1.9843 -2.7202 2.0669 30 1 0.5565 -2.2815 1.0991 31 1 2.1862 -4.8107 0.8161 32 1 0.8288 -4.4251 -0.2688 33 1 3.6098 -4.8394 -1.1535 34 1 2.3808 -5.9513 -1.2934 35 1 2.2944 -2.5274 -2.1971 36 1 0.6991 -2.3177 -1.4330 37 1 3.8827 -1.5505 -3.0673 38 1 2.3488 -1.2052 -3.9018 39 1 6.0325 1.4057 -7.6883 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701012453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:29 Heat of formation + Delta-G solvation = -74.349847 kcal Electronic energy + Delta-G solvation = -19383.463364 eV Core-core repulsion = 16450.406542 eV Total energy + Delta-G solvation = -2933.056823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.41153 -38.95380 -36.06854 -34.58332 -34.19590 -32.38845 -30.46135 -28.73529 -27.66006 -26.15419 -24.71338 -22.47325 -21.59712 -19.91650 -19.27770 -18.22029 -16.94694 -16.86472 -16.81716 -16.39035 -16.02276 -15.87019 -15.46492 -15.09298 -14.58519 -14.44690 -14.16695 -13.97599 -13.62788 -13.42317 -13.29066 -13.16432 -13.01550 -12.86146 -12.60146 -12.44684 -12.00425 -11.77323 -11.72023 -11.50248 -11.27960 -11.12471 -10.80639 -10.27315 -9.66633 -9.46731 -8.67700 -8.33839 -6.12774 1.25730 1.44530 1.45733 1.56243 1.56985 2.11444 2.28220 2.99984 3.25419 3.52789 3.66406 3.83978 3.96174 4.00167 4.04080 4.19128 4.24862 4.34913 4.44989 4.52379 4.63206 4.66555 4.71967 4.80200 4.83280 4.93197 5.03067 5.09798 5.12690 5.17000 5.31120 5.41839 5.52374 5.67970 6.20285 6.30418 6.33060 6.64437 7.06890 7.15754 8.75359 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022020 B = 0.004927 C = 0.004181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.285062 B = 5681.900397 C = 6694.884809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.126 3.874 3 H 0.067 0.933 4 C -0.121 4.121 5 C -0.108 4.108 6 C -0.096 4.096 7 H 0.059 0.941 8 C 0.075 3.925 9 N -0.866 5.866 10 C 0.115 3.885 11 N -0.601 5.601 12 C 0.531 3.469 13 O -0.570 6.570 14 C -0.118 4.118 15 S -0.151 6.151 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.015 3.985 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.261 1.261 24 H 0.088 0.912 25 H 0.037 0.963 26 H 0.077 0.923 27 H 0.049 0.951 28 H 0.098 0.902 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.081 0.919 33 H 0.342 0.658 34 H 0.351 0.649 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 -13.933 18.099 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 H 0.085 0.915 4 C -0.159 4.159 5 C -0.146 4.146 6 C -0.116 4.116 7 H 0.077 0.923 8 C -0.056 4.056 9 N -0.397 5.397 10 C -0.007 4.007 11 N -0.334 5.334 12 C 0.318 3.682 13 O -0.449 6.449 14 C -0.270 4.270 15 S 0.077 5.923 16 C -0.694 4.694 17 H 0.099 0.901 18 C -0.190 4.190 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.186 1.186 24 H 0.107 0.893 25 H 0.056 0.944 26 H 0.096 0.904 27 H 0.068 0.932 28 H 0.117 0.883 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.165 0.835 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.559 -11.549 17.737 23.653 hybrid contribution 0.837 -1.942 -0.510 2.176 sum -9.722 -13.492 17.227 23.944 Atomic orbital electron populations 1.22082 0.93122 1.03322 1.02468 1.21348 0.95503 0.96503 0.84349 0.91452 1.21873 1.00657 0.96653 0.96706 1.21565 1.01730 0.94034 0.97247 1.21513 1.00196 0.95103 0.94769 0.92281 1.21741 0.99550 0.91963 0.92365 1.58678 1.13287 1.20188 1.47519 1.21878 1.01717 0.77307 0.99752 1.48239 1.54903 1.10315 1.19954 1.20139 0.77317 0.86761 0.83946 1.90655 1.58332 1.16951 1.78949 1.23323 1.03764 1.02692 0.97179 1.85526 1.70897 1.15777 1.20142 1.23151 1.42371 0.97022 1.06883 0.90087 1.26132 0.94681 0.97410 1.00760 1.70182 1.38002 1.15232 1.31423 0.85001 0.78769 0.77685 0.76517 1.18654 1.20238 1.18574 0.89329 0.94359 0.90378 0.93193 0.88339 0.89845 0.89749 0.93772 0.90042 0.84518 0.83511 0.89859 0.90123 0.87966 0.88101 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.02 71.98 0.65 -2.25 16 2 C 0.13 3.11 3.21 44.97 0.14 3.26 16 3 H 0.07 2.11 7.00 -2.39 -0.02 2.09 16 4 C -0.12 -2.13 5.55 30.67 0.17 -1.96 16 5 C -0.11 -1.41 4.96 30.62 0.15 -1.26 16 6 C -0.10 -1.61 2.48 -10.72 -0.03 -1.63 16 7 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 8 C 0.07 0.94 6.18 86.30 0.53 1.48 16 9 N -0.87 -12.78 9.20 -186.72 -1.72 -14.49 16 10 C 0.12 2.62 5.03 86.36 0.43 3.05 16 11 N -0.60 -17.83 2.68 -795.03 -2.13 -19.96 16 12 C 0.53 21.87 7.72 87.66 0.68 22.55 16 13 O -0.57 -28.50 15.28 -3.05 -0.05 -28.55 16 14 C -0.12 -5.17 4.50 71.24 0.32 -4.84 16 15 S -0.15 -8.75 20.57 -56.49 -1.16 -9.92 16 16 C -0.55 -32.22 9.50 67.95 0.65 -31.57 16 17 H 0.08 4.46 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.86 5.49 84.86 0.47 1.33 16 19 N -0.91 -57.14 13.22 21.65 0.29 -56.86 16 20 Si 1.00 44.40 29.55 68.60 2.03 46.42 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 23 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 24 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.08 1.19 5.73 -2.39 -0.01 1.17 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 30 H 0.08 0.88 6.51 -2.39 -0.02 0.87 16 31 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.34 5.12 8.99 -89.69 -0.81 4.32 16 34 H 0.35 3.92 9.08 -89.69 -0.81 3.11 16 35 H 0.08 2.17 5.72 -2.39 -0.01 2.15 16 36 H 0.08 1.59 7.49 -2.38 -0.02 1.57 16 37 H 0.10 4.14 7.69 -2.39 -0.02 4.12 16 38 H 0.10 4.10 7.94 -2.39 -0.02 4.09 16 39 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -77.27 322.86 0.86 -76.41 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.56 Total: 18.79 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 4.17 Total: -11.85 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -3.56 Total: -91.31 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: -8.75 SS G_CDS: -1.16 Total: -9.92 kcal Total: -77.27 0.86 -76.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701012453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.065 kcal (2) G-P(sol) polarization free energy of solvation -77.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds