Wall clock time and date at job start Mon Mar 30 2020 05:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.70184 * 2 1 4 4 C 1.53194 * 109.58562 * 120.35499 * 2 1 3 5 5 C 1.53040 * 109.31242 * 65.15308 * 4 2 1 6 6 C 1.53039 * 109.53709 * 61.36517 * 5 4 2 7 7 C 1.53622 * 109.24275 * 298.51110 * 6 5 4 8 8 H 1.08999 * 109.74063 * 295.11769 * 7 6 5 9 9 C 1.52996 * 109.66722 * 174.55050 * 7 6 5 10 10 N 1.46897 * 109.47593 * 171.85951 * 9 7 6 11 11 N 1.46924 * 109.58974 * 239.64495 * 2 1 3 12 12 C 1.34782 * 120.62903 * 113.79617 * 11 2 1 13 13 O 1.21277 * 119.99820 * 174.05103 * 12 11 2 14 14 C 1.50697 * 120.00022 * 354.05106 * 12 11 2 15 15 S 1.81001 * 109.47054 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00110 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99950 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00042 * 179.97438 * 16 15 14 19 19 N 1.31627 * 119.99950 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99755 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.47359 * 270.00075 * 20 18 16 22 22 H 1.48500 * 109.47132 * 30.00463 * 20 18 16 23 23 H 1.48496 * 109.46828 * 150.00267 * 20 18 16 24 24 H 1.09003 * 109.46909 * 180.35621 * 1 2 3 25 25 H 1.09000 * 109.47049 * 300.35530 * 1 2 3 26 26 H 1.08998 * 109.46877 * 60.35603 * 1 2 3 27 27 H 1.09002 * 109.49504 * 185.10769 * 4 2 1 28 28 H 1.08998 * 109.49752 * 305.19781 * 4 2 1 29 29 H 1.09000 * 109.46146 * 181.38296 * 5 4 2 30 30 H 1.08994 * 109.45894 * 301.34196 * 5 4 2 31 31 H 1.09008 * 109.50010 * 58.58186 * 6 5 4 32 32 H 1.09000 * 109.50058 * 178.67805 * 6 5 4 33 33 H 1.09010 * 109.47211 * 291.85742 * 9 7 6 34 34 H 1.08998 * 109.47075 * 51.85618 * 9 7 6 35 35 H 1.00896 * 111.00461 * 179.97438 * 10 9 7 36 36 H 1.00896 * 111.00047 * 303.95478 * 10 9 7 37 37 H 1.08993 * 109.47367 * 60.00107 * 14 12 11 38 38 H 1.09007 * 109.47112 * 299.99475 * 14 12 11 39 39 H 0.97004 * 119.99495 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 1.6414 -2.2041 1.1702 6 6 2.2800 -2.8464 -0.0634 7 6 1.7643 -2.1399 -1.3263 8 1 0.6931 -2.3108 -1.4324 9 6 2.4972 -2.6819 -2.5551 10 7 1.8707 -2.1504 -3.7729 11 7 2.0226 -0.6995 -1.1944 12 6 2.6937 -0.0315 -2.1536 13 8 3.1885 -0.6365 -3.0809 14 6 2.8292 1.4673 -2.0737 15 16 3.7753 2.0642 -3.4966 16 6 3.7794 3.7933 -3.1578 17 1 3.2849 4.1718 -2.2754 18 6 4.4190 4.6688 -4.0243 19 7 4.4225 5.9605 -3.7709 20 14 5.2761 4.0138 -5.5494 21 1 6.6897 3.6951 -5.2245 22 1 4.5860 2.7843 -6.0155 23 1 5.2341 5.0414 -6.6206 24 1 -0.3633 -1.0277 0.0064 25 1 -0.3633 0.5193 0.8868 26 1 -0.3633 0.5083 -0.8932 27 1 3.1297 -0.6503 1.2914 28 1 1.6075 -0.2784 2.1368 29 1 1.9843 -2.7202 2.0669 30 1 0.5565 -2.2815 1.0994 31 1 3.3640 -2.7473 -0.0052 32 1 2.0124 -3.9022 -0.1037 33 1 3.5423 -2.3740 -2.5201 34 1 2.4391 -3.7703 -2.5620 35 1 2.3374 -2.4937 -4.5990 36 1 0.8857 -2.3675 -3.7972 37 1 3.3474 1.7368 -1.1535 38 1 1.8387 1.9225 -2.0797 39 1 4.8698 6.5722 -4.3764 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701013211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:23 Heat of formation + Delta-G solvation = -10.639986 kcal Electronic energy + Delta-G solvation = -19914.883610 eV Core-core repulsion = 16984.589455 eV Total energy + Delta-G solvation = -2930.294156 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.38462 -37.25426 -34.84876 -32.80919 -32.36294 -31.40952 -29.23383 -27.68807 -25.55761 -25.15904 -23.16991 -21.93047 -20.50045 -18.64548 -17.38667 -16.47411 -15.94555 -15.43531 -15.07436 -14.91234 -14.63069 -14.38187 -14.06614 -13.54416 -13.40521 -13.26207 -12.94061 -12.73839 -12.70781 -12.33268 -11.90020 -11.77229 -11.58731 -11.21869 -11.17486 -10.95849 -10.86066 -10.60553 -10.47661 -10.45942 -9.77878 -8.93390 -8.50950 -8.41168 -8.35545 -7.86428 -6.79415 -6.22133 -3.91278 2.87852 3.29223 3.35680 3.38084 3.56331 3.71172 4.39632 4.52165 4.56656 4.65692 4.83694 4.89260 5.07176 5.16006 5.17391 5.19183 5.30113 5.35172 5.36317 5.58793 5.60295 5.61151 5.74153 5.80546 5.85835 5.90246 5.92634 5.97906 6.04038 6.15479 6.24066 6.36784 6.87849 7.52217 7.78039 7.83736 8.01235 8.48780 8.89604 9.24820 10.87364 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026637 B = 0.005448 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.914694 B = 5137.838446 C = 5825.200981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.095 0.905 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.130 4.130 7 C 0.154 3.846 8 H 0.062 0.938 9 C 0.075 3.925 10 N -0.812 5.812 11 N -0.609 5.609 12 C 0.525 3.475 13 O -0.465 6.465 14 C -0.119 4.119 15 S -0.141 6.141 16 C -0.519 4.519 17 H 0.086 0.914 18 C 0.095 3.905 19 N -0.883 5.883 20 Si 0.857 3.143 21 H -0.268 1.268 22 H -0.235 1.235 23 H -0.276 1.276 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.007 0.993 35 H 0.339 0.661 36 H 0.314 0.686 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.763 -17.897 9.491 21.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.113 0.887 4 C -0.168 4.168 5 C -0.155 4.155 6 C -0.169 4.169 7 C 0.050 3.950 8 H 0.080 0.920 9 C -0.055 4.055 10 N -0.342 5.342 11 N -0.347 5.347 12 C 0.311 3.689 13 O -0.335 6.335 14 C -0.269 4.269 15 S 0.085 5.915 16 C -0.667 4.667 17 H 0.104 0.896 18 C -0.113 4.113 19 N -0.521 5.521 20 Si 0.682 3.318 21 H -0.194 1.194 22 H -0.158 1.158 23 H -0.201 1.201 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.025 0.975 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.718 -17.888 8.296 20.831 hybrid contribution -0.514 -0.163 0.374 0.656 sum -7.232 -18.051 8.670 21.291 Atomic orbital electron populations 1.22162 0.95376 1.02118 1.02402 1.21237 0.94189 0.96948 0.84708 0.88713 1.21932 1.01679 0.95708 0.97504 1.21512 1.00679 0.95677 0.97652 1.22016 1.01333 0.99049 0.94510 1.21197 0.98539 0.80808 0.94468 0.91985 1.21948 1.01436 0.93046 0.89089 1.58935 1.04886 1.66729 1.03677 1.47948 1.58123 1.07676 1.20969 1.19983 0.78797 0.88647 0.81444 1.90712 1.43619 1.67356 1.31776 1.23331 1.04549 0.94865 1.04186 1.84691 1.70305 1.06789 1.29681 1.22367 1.41112 0.89386 1.13839 0.89617 1.24709 0.94889 0.94083 0.97656 1.69948 1.42581 1.01851 1.37672 0.86726 0.81340 0.80745 0.82982 1.19360 1.15845 1.20118 0.92384 0.91745 0.92029 0.91370 0.90908 0.91924 0.91695 0.91306 0.91378 0.88570 0.97524 0.84810 0.87375 0.89499 0.89285 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.02 37.16 0.34 -1.28 16 2 C 0.13 1.54 3.10 -67.60 -0.21 1.33 16 3 H 0.09 1.19 5.97 -51.93 -0.31 0.88 16 4 C -0.13 -1.23 5.55 -26.61 -0.15 -1.38 16 5 C -0.12 -0.99 5.67 -26.69 -0.15 -1.14 16 6 C -0.13 -1.24 5.39 -26.39 -0.14 -1.38 16 7 C 0.15 1.82 2.67 -67.38 -0.18 1.64 16 8 H 0.06 0.70 7.46 -51.93 -0.39 0.31 16 9 C 0.08 0.99 5.39 -3.83 -0.02 0.97 16 10 N -0.81 -11.55 6.72 -10.37 -0.07 -11.62 16 11 N -0.61 -8.46 2.68 -157.48 -0.42 -8.89 16 12 C 0.52 9.59 7.39 -10.98 -0.08 9.50 16 13 O -0.46 -9.47 9.93 5.56 0.06 -9.42 16 14 C -0.12 -2.41 4.58 36.00 0.16 -2.25 16 15 S -0.14 -3.65 18.55 -107.50 -1.99 -5.64 16 16 C -0.52 -15.28 10.04 30.94 0.31 -14.97 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.09 2.82 5.50 -17.43 -0.10 2.73 16 19 N -0.88 -27.11 13.97 55.49 0.78 -26.33 16 20 Si 0.86 22.19 27.74 -169.99 -4.72 17.47 16 21 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.23 -6.07 6.74 56.52 0.38 -5.69 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H 0.06 0.53 5.71 -51.93 -0.30 0.24 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.51 6.49 -51.93 -0.34 0.17 16 31 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.54 6.32 -51.92 -0.33 1.22 16 34 H 0.01 0.08 8.13 -51.93 -0.42 -0.34 16 35 H 0.34 4.64 9.08 -39.29 -0.36 4.28 16 36 H 0.31 3.86 8.98 -39.29 -0.35 3.50 16 37 H 0.09 1.68 7.44 -51.92 -0.39 1.30 16 38 H 0.09 1.77 8.13 -51.91 -0.42 1.34 16 39 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 311.89 15.07 4.70 4.70 Total: -1.00 -32.78 311.89 -8.02 -40.80 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -6.14 Total: 5.14 kcal Atomic # 6 Polarization: -6.01 SS G_CDS: -0.22 Total: -6.23 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: 0.28 Total: -46.83 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.06 Total: -9.42 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.72 Total: 17.47 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.64 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.78 -8.02 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701013211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.159 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds