Wall clock time and date at job start Mon Mar 30 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 119.99824 * 2 1 4 4 H 1.48500 * 109.47214 * 240.00008 * 3 2 1 5 5 H 1.48496 * 109.47437 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46536 * 120.00446 * 3 2 1 7 7 C 1.38793 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99946 * 180.02562 * 7 2 1 9 9 S 1.76198 * 120.00035 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00092 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47178 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34779 * 119.99944 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99872 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46840 * 180.02562 * 14 13 11 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 13 17 17 H 1.09010 * 109.50197 * 304.99217 * 16 15 14 18 18 C 1.53119 * 109.50324 * 184.92375 * 16 15 14 19 19 C 1.53126 * 109.16085 * 182.44205 * 18 16 15 20 20 C 1.53043 * 109.30978 * 57.58663 * 19 18 16 21 21 N 1.46839 * 109.52430 * 300.84457 * 20 19 18 22 22 C 1.46848 * 111.20071 * 61.74482 * 21 20 19 23 23 H 0.97005 * 119.99745 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47154 * 59.99907 * 10 9 7 25 25 H 1.09001 * 109.47171 * 299.99889 * 10 9 7 26 26 H 0.97000 * 119.99708 * 359.97438 * 13 11 10 27 27 H 1.09002 * 109.47391 * 59.99686 * 14 13 11 28 28 H 1.09001 * 109.46813 * 299.99742 * 14 13 11 29 29 H 1.09001 * 109.47194 * 299.99493 * 15 14 13 30 30 H 1.08992 * 109.47399 * 59.99666 * 15 14 13 31 31 H 1.09008 * 109.51739 * 302.30224 * 18 16 15 32 32 H 1.08993 * 109.52677 * 62.49325 * 18 16 15 33 33 H 1.09000 * 109.46771 * 297.65062 * 19 18 16 34 34 H 1.08998 * 109.53771 * 177.56774 * 19 18 16 35 35 H 1.09000 * 109.46021 * 180.82569 * 20 19 18 36 36 H 1.09006 * 109.45166 * 60.85404 * 20 19 18 37 37 H 1.00900 * 110.99982 * 185.83638 * 21 20 19 38 38 H 1.08993 * 109.46689 * 178.23967 * 22 21 20 39 39 H 1.08997 * 109.46413 * 58.26620 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7279 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 0.0007 14 6 2.3303 -7.7151 0.0008 15 6 3.5024 -8.6985 0.0022 16 6 2.9658 -10.1313 0.0016 17 1 2.2854 -10.2655 0.8426 18 6 4.1331 -11.1144 0.1269 19 6 3.5935 -12.5460 0.0641 20 6 2.8282 -12.7414 -1.2467 21 7 1.7218 -11.7786 -1.3173 22 6 2.2188 -10.3968 -1.3074 23 1 -0.4850 0.8401 0.0004 24 1 3.1244 -3.7313 0.8894 25 1 3.1244 -3.7313 -0.8905 26 1 3.8009 -6.1835 0.0004 27 1 1.7221 -7.8754 -0.8894 28 1 1.7213 -7.8749 0.8906 29 1 4.1118 -8.5388 -0.8874 30 1 4.1102 -8.5381 0.8925 31 1 4.8341 -10.9537 -0.6923 32 1 4.6411 -10.9573 1.0783 33 1 2.9230 -12.7188 0.9061 34 1 4.4237 -13.2508 0.1094 35 1 2.4304 -13.7554 -1.2874 36 1 3.5027 -12.5818 -2.0881 37 1 1.1449 -11.9494 -2.1272 38 1 1.3785 -9.7079 -1.3921 39 1 2.8961 -10.2484 -2.1485 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701013270.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:20 Heat of formation + Delta-G solvation = -86.599285 kcal Electronic energy + Delta-G solvation = -18100.117736 eV Core-core repulsion = 15166.529738 eV Total energy + Delta-G solvation = -2933.587998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.68801 -39.71663 -36.45562 -34.58357 -34.03549 -32.61602 -31.12077 -28.62523 -27.62811 -24.92309 -24.43368 -22.11346 -21.74093 -20.53364 -19.80544 -17.85620 -17.48142 -17.01890 -16.87384 -16.84075 -15.98234 -15.78816 -15.37175 -15.03607 -14.76733 -14.54998 -14.47626 -14.06500 -13.81977 -13.53874 -13.17278 -13.16701 -12.86283 -12.71039 -12.60589 -12.35455 -11.88445 -11.75233 -11.59141 -11.35192 -11.13972 -11.12523 -10.89200 -10.27734 -10.09167 -9.39138 -8.66999 -8.34142 -6.12711 1.27342 1.44447 1.47422 1.57264 1.61847 2.26936 2.31731 2.99770 3.27540 3.33240 3.69526 3.86388 3.92277 4.03388 4.16041 4.25505 4.30219 4.36898 4.42588 4.50837 4.52238 4.62626 4.69452 4.81813 4.93841 4.96304 4.97002 5.12901 5.13666 5.24353 5.35062 5.41728 5.46277 5.52305 6.10200 6.19937 6.47212 6.52803 7.06782 7.26082 8.74893 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.061572 B = 0.002627 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.644282 B =10654.086367 C =10929.037286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.530 3.470 12 O -0.568 6.568 13 N -0.713 5.713 14 C 0.119 3.881 15 C -0.111 4.111 16 C -0.079 4.079 17 H 0.069 0.931 18 C -0.113 4.113 19 C -0.119 4.119 20 C 0.055 3.945 21 N -0.703 5.703 22 C 0.058 3.942 23 H 0.271 0.729 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.417 0.583 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.031 0.969 37 H 0.349 0.651 38 H 0.065 0.935 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.385 -23.959 -1.707 27.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.316 3.684 12 O -0.447 6.447 13 N -0.367 5.367 14 C -0.005 4.005 15 C -0.149 4.149 16 C -0.098 4.098 17 H 0.087 0.913 18 C -0.150 4.150 19 C -0.157 4.157 20 C -0.075 4.075 21 N -0.335 5.335 22 C -0.071 4.071 23 H 0.080 0.920 24 H 0.129 0.871 25 H 0.129 0.871 26 H 0.254 0.746 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 11.140 -24.250 -1.037 26.706 hybrid contribution 1.923 1.415 -0.920 2.559 sum 13.063 -22.835 -1.958 26.380 Atomic orbital electron populations 1.70186 1.08010 1.28679 1.47956 1.26157 0.95989 1.03401 0.93737 0.84987 0.77778 0.75591 0.79526 1.18600 1.20435 1.18616 1.23173 0.95361 0.91942 1.58951 0.89826 1.85604 1.10756 0.99354 1.97064 1.23373 1.03473 0.94281 1.06868 1.20120 0.86274 0.86825 0.75172 1.90691 1.17550 1.86178 1.50269 1.45775 1.10316 1.05200 1.75372 1.21467 0.97613 0.79993 1.01378 1.21741 0.96393 0.92564 1.04236 1.21074 0.97355 0.93571 0.97837 0.91302 1.21609 0.96670 0.94129 1.02623 1.21606 0.99644 0.96953 0.97486 1.21991 0.92141 0.96149 0.97170 1.60247 1.22315 1.03003 1.47948 1.22035 0.98440 0.89872 0.96784 0.91993 0.87125 0.87106 0.74590 0.92575 0.92956 0.89929 0.89437 0.91590 0.90810 0.92090 0.90167 0.90165 0.95032 0.83297 0.91612 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.45 13.22 21.65 0.29 -56.17 16 2 C 0.01 0.68 5.49 84.86 0.47 1.14 16 3 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.13 -5.12 6.16 71.24 0.44 -4.68 16 11 C 0.53 19.85 7.85 87.66 0.69 20.54 16 12 O -0.57 -27.02 15.86 -3.02 -0.05 -27.07 16 13 N -0.71 -17.88 5.56 -463.05 -2.57 -20.45 16 14 C 0.12 2.66 5.43 86.38 0.47 3.13 16 15 C -0.11 -1.54 4.80 30.59 0.15 -1.40 16 16 C -0.08 -1.15 2.35 -10.74 -0.03 -1.18 16 17 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 18 C -0.11 -1.30 5.29 30.68 0.16 -1.14 16 19 C -0.12 -1.38 6.09 30.65 0.19 -1.19 16 20 C 0.05 0.67 6.55 86.33 0.57 1.23 16 21 N -0.70 -10.81 6.85 -514.02 -3.52 -14.33 16 22 C 0.06 0.93 5.57 86.33 0.48 1.41 16 23 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 24 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 25 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 26 H 0.42 7.28 8.47 -92.71 -0.79 6.49 16 27 H 0.06 1.40 6.59 -2.39 -0.02 1.39 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 29 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.03 0.37 8.14 -2.38 -0.02 0.35 16 37 H 0.35 4.57 8.90 -89.69 -0.80 3.77 16 38 H 0.07 1.24 6.61 -2.39 -0.02 1.22 16 39 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -76.15 330.54 -1.30 -77.45 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -0.54 Total: 17.59 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: 4.22 Total: -12.83 kcal Atomic # 7 Polarization: -85.14 SS G_CDS: -5.80 Total: -90.95 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -76.15 -1.30 -77.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701013270.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.147 kcal (2) G-P(sol) polarization free energy of solvation -76.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds