Wall clock time and date at job start Mon Mar 30 2020 05:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47423 * 2 1 4 4 H 1.09001 * 109.49507 * 304.93864 * 3 2 1 5 5 C 1.53187 * 109.49841 * 64.99913 * 3 2 1 6 6 N 1.46932 * 108.77834 * 174.62017 * 5 3 2 7 7 C 1.34771 * 120.63150 * 126.36682 * 6 5 3 8 8 O 1.21288 * 119.99896 * 0.02562 * 7 6 5 9 9 C 1.50703 * 120.00048 * 180.02562 * 7 6 5 10 10 S 1.81000 * 109.46826 * 180.02562 * 9 7 6 11 11 C 1.76205 * 99.99509 * 180.02562 * 10 9 7 12 12 H 1.08002 * 120.00431 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99884 * 180.02562 * 11 10 9 14 14 N 1.31634 * 119.99752 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99976 * 180.27840 * 13 11 10 16 16 H 1.48501 * 109.46922 * 269.71945 * 15 13 11 17 17 H 1.48496 * 109.47354 * 29.72142 * 15 13 11 18 18 H 1.48501 * 109.47428 * 149.72250 * 15 13 11 19 19 C 1.46926 * 118.73683 * 306.64851 * 6 5 3 20 20 C 1.52762 * 109.00795 * 53.30487 * 19 6 5 21 21 C 1.53035 * 109.38553 * 305.58795 * 20 19 6 22 22 H 1.09006 * 109.44979 * 301.22911 * 21 20 19 23 23 N 1.46901 * 109.46234 * 181.26202 * 21 20 19 24 24 H 1.08999 * 109.47435 * 60.00055 * 1 2 3 25 25 H 1.09003 * 109.47327 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47125 * 299.99867 * 1 2 3 27 27 H 1.08996 * 109.46883 * 239.99813 * 2 1 3 28 28 H 1.09002 * 109.47312 * 120.00444 * 2 1 3 29 29 H 1.09002 * 109.58483 * 54.83277 * 5 3 2 30 30 H 1.08999 * 109.70328 * 294.47939 * 5 3 2 31 31 H 1.09000 * 109.46926 * 60.00592 * 9 7 6 32 32 H 1.09001 * 109.47144 * 300.00330 * 9 7 6 33 33 H 0.97005 * 119.99723 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58763 * 173.13904 * 19 6 5 35 35 H 1.09008 * 109.58333 * 293.56717 * 19 6 5 36 36 H 1.09008 * 109.56298 * 185.55303 * 20 19 6 37 37 H 1.09001 * 109.38617 * 65.52015 * 20 19 6 38 38 H 1.00900 * 110.99990 * 59.93470 * 23 21 20 39 39 H 1.00895 * 110.99962 * 183.88312 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6351 2.1280 1.3087 6 7 2.2410 3.4659 1.3490 7 6 1.4805 4.5580 1.5624 8 8 0.2841 4.4416 1.7241 9 6 2.1168 5.9236 1.6004 10 16 0.8437 7.1740 1.9036 11 6 1.8370 8.6294 1.8976 12 1 2.9022 8.5556 1.7357 13 6 1.2503 9.8708 2.1010 14 7 -0.0481 9.9608 2.2979 15 14 2.3021 11.4144 2.0869 16 1 2.7820 11.6990 3.4632 17 1 3.4670 11.2115 1.1886 18 1 1.4936 12.5600 1.5979 19 6 3.6907 3.5913 1.1458 20 6 4.0733 2.8889 -0.1557 21 6 3.5655 1.4456 -0.1222 22 1 3.9993 0.9279 0.7334 23 7 3.9588 0.7595 -1.3602 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 1.8932 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8899 29 1 1.9913 1.5400 2.1546 30 1 0.5498 2.2167 1.3566 31 1 2.6035 6.1242 0.6459 32 1 2.8568 5.9576 2.3999 33 1 -0.4581 10.8284 2.4397 34 1 3.9612 4.6454 1.0836 35 1 4.2180 3.1250 1.9782 36 1 5.1578 2.8905 -0.2662 37 1 3.6212 3.4143 -0.9969 38 1 4.9623 0.7481 -1.4641 39 1 3.5814 -0.1757 -1.3908 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701013508.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:03:46 Heat of formation + Delta-G solvation = -73.510053 kcal Electronic energy + Delta-G solvation = -19141.113376 eV Core-core repulsion = 16208.092970 eV Total energy + Delta-G solvation = -2933.020406 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33892 -39.16159 -35.95769 -34.61792 -34.57706 -31.60840 -31.08951 -29.27777 -27.67156 -25.40632 -24.98555 -22.40264 -21.27388 -20.37523 -19.48817 -18.18316 -17.29004 -16.88309 -16.72998 -16.54744 -16.10705 -15.89525 -15.33471 -14.82115 -14.66584 -14.46778 -14.37493 -14.26980 -13.57004 -13.50356 -13.16731 -13.06239 -12.89363 -12.81906 -12.62554 -12.60122 -12.15836 -11.74685 -11.66827 -11.55355 -11.24855 -11.14360 -10.84867 -10.27252 -9.71438 -9.54504 -8.68384 -8.34785 -6.13661 1.24898 1.42793 1.45536 1.54720 1.56881 2.09010 2.27177 2.99408 3.23672 3.49215 3.57446 3.72262 3.82555 3.91238 4.17765 4.20648 4.24528 4.33150 4.38567 4.42817 4.52682 4.63966 4.69150 4.70849 4.78416 4.93964 5.00498 5.06381 5.16443 5.25434 5.36111 5.41254 5.42709 5.57154 6.19399 6.26709 6.30834 6.66836 7.06207 7.12114 8.74608 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032672 B = 0.004007 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.802242 B = 6986.561193 C = 7621.484731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.110 4.110 3 C -0.090 4.090 4 H 0.054 0.946 5 C 0.114 3.886 6 N -0.607 5.607 7 C 0.531 3.469 8 O -0.568 6.568 9 C -0.123 4.123 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.257 1.257 18 H -0.278 1.278 19 C 0.101 3.899 20 C -0.124 4.124 21 C 0.103 3.897 22 H 0.054 0.946 23 N -0.854 5.854 24 H 0.043 0.957 25 H 0.069 0.931 26 H 0.045 0.955 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.271 0.729 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.054 0.946 38 H 0.351 0.649 39 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.815 -21.059 -4.706 25.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.148 4.148 3 C -0.110 4.110 4 H 0.072 0.928 5 C -0.008 4.008 6 N -0.341 5.341 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.274 4.274 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.192 1.192 17 H -0.181 1.181 18 H -0.203 1.203 19 C -0.022 4.022 20 C -0.163 4.163 21 C -0.008 4.008 22 H 0.071 0.929 23 N -0.387 5.387 24 H 0.062 0.938 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.165 0.835 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.521 -20.577 -4.816 23.607 hybrid contribution 1.710 0.655 0.447 1.885 sum 12.231 -19.921 -4.369 23.781 Atomic orbital electron populations 1.21826 0.96239 1.02136 1.01251 1.21500 0.95719 0.94356 1.03194 1.21515 0.96030 0.97129 0.96289 0.92751 1.21790 0.99124 0.81580 0.98344 1.48126 1.09150 1.05790 1.71000 1.20169 0.86393 0.86106 0.75453 1.90668 1.16658 1.86619 1.50693 1.23362 1.03207 0.94671 1.06116 1.85600 1.13524 0.99268 1.94220 1.23198 0.96309 0.92752 1.57131 0.89869 1.26144 0.96673 1.02611 0.93665 1.70194 1.11724 1.26380 1.46528 0.84937 0.77915 0.75954 0.79072 1.19195 1.18117 1.20316 1.21947 0.78421 1.02934 0.98878 1.21846 1.02505 0.95303 0.96614 1.21197 0.93567 0.94333 0.91733 0.92857 1.58665 1.17585 1.24348 1.38126 0.93796 0.91186 0.93635 0.89980 0.90491 0.89738 0.91176 0.87697 0.87305 0.91981 0.89193 0.88779 0.88143 0.92731 0.83499 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.67 71.98 0.70 -2.04 16 2 C -0.11 -1.58 5.18 30.59 0.16 -1.42 16 3 C -0.09 -1.74 2.06 -10.72 -0.02 -1.76 16 4 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.11 2.79 5.32 86.36 0.46 3.25 16 6 N -0.61 -17.23 2.98 -819.71 -2.44 -19.67 16 7 C 0.53 21.07 7.72 87.66 0.68 21.74 16 8 O -0.57 -27.75 15.27 -3.06 -0.05 -27.80 16 9 C -0.12 -5.08 4.50 71.24 0.32 -4.76 16 10 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 11 C -0.55 -31.57 9.50 67.96 0.65 -30.92 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.79 5.49 84.86 0.47 1.26 16 14 N -0.91 -56.61 13.22 21.65 0.29 -56.33 16 15 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 19 C 0.10 2.00 6.31 86.22 0.54 2.54 16 20 C -0.12 -2.07 5.64 30.53 0.17 -1.90 16 21 C 0.10 1.52 2.74 44.94 0.12 1.65 16 22 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 23 N -0.85 -10.60 9.21 -168.57 -1.55 -12.16 16 24 H 0.04 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.04 0.92 6.70 -2.38 -0.02 0.90 16 27 H 0.08 0.97 6.31 -2.39 -0.02 0.95 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.07 2.14 5.72 -2.39 -0.01 2.12 16 31 H 0.10 3.99 7.68 -2.39 -0.02 3.97 16 32 H 0.11 4.04 7.95 -2.39 -0.02 4.02 16 33 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 34 H 0.09 1.85 5.93 -2.39 -0.01 1.84 16 35 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.16 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.35 3.12 9.04 -89.69 -0.81 2.31 16 39 H 0.35 3.40 6.89 -89.70 -0.62 2.78 16 Total: -1.00 -76.66 321.90 0.98 -75.68 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -0.37 Total: 16.70 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.24 Total: -12.36 kcal Atomic # 7 Polarization: -84.45 SS G_CDS: -3.71 Total: -88.16 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.80 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -1.16 Total: -9.90 kcal Total: -76.66 0.98 -75.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701013508.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.169 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds