Wall clock time and date at job start Mon Mar 30 2020 04:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86797 * 120.00313 * 2 1 4 4 H 1.48502 * 109.47523 * 240.00089 * 3 2 1 5 5 H 1.48500 * 109.47094 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47100 * 119.99997 * 3 2 1 7 7 C 1.38802 * 120.00032 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.81004 * 100.00170 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47124 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 179.97438 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 C 1.52999 * 109.47001 * 295.13027 * 17 16 15 19 19 N 1.46903 * 109.46491 * 179.97438 * 18 17 16 20 20 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 21 21 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 22 22 H 0.96996 * 119.99581 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46598 * 59.99628 * 10 9 7 24 24 H 1.09001 * 109.47042 * 299.99889 * 10 9 7 25 25 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 26 26 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 27 27 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 28 28 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 29 29 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 30 30 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 31 31 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 32 32 H 1.08991 * 109.47450 * 299.99495 * 18 17 16 33 33 H 1.08999 * 109.47142 * 60.00302 * 18 17 16 34 34 H 1.00894 * 111.00459 * 56.04994 * 19 18 17 35 35 H 1.00911 * 110.99404 * 180.02562 * 19 18 17 36 36 H 1.08994 * 109.50232 * 301.42239 * 20 16 15 37 37 H 1.09007 * 109.52628 * 181.33900 * 20 16 15 38 38 H 1.08994 * 109.58580 * 353.38021 * 21 13 11 39 39 H 1.09006 * 109.57831 * 113.65514 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 2.3439 -7.7247 0.0019 15 6 2.9815 -8.4840 -1.1659 16 6 4.5073 -8.3646 -1.0703 17 6 5.1516 -9.1487 -2.2154 18 6 4.8475 -10.6388 -2.0476 19 7 5.4656 -11.3914 -3.1474 20 6 4.9144 -6.8927 -1.1679 21 6 4.2958 -6.1174 0.0003 22 1 -0.4849 0.8400 -0.0004 23 1 3.1244 -3.7314 0.8905 24 1 3.1244 -3.7315 -0.8895 25 1 2.6101 -8.2089 0.9415 26 1 1.2600 -7.7211 -0.1129 27 1 2.6917 -9.5337 -1.1189 28 1 2.6417 -8.0542 -2.1081 29 1 4.8437 -8.7720 -0.1169 30 1 4.7484 -8.8003 -3.1662 31 1 6.2304 -8.9940 -2.1997 32 1 5.2507 -10.9871 -1.0968 33 1 3.7686 -10.7934 -2.0633 34 1 6.4577 -11.2137 -3.1945 35 1 5.2786 -12.3791 -3.0594 36 1 4.5566 -6.4779 -2.1102 37 1 6.0005 -6.8114 -1.1237 38 1 4.5001 -5.0533 -0.1181 39 1 4.7204 -6.4686 0.9408 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701013519.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:25 Heat of formation + Delta-G solvation = -79.268132 kcal Electronic energy + Delta-G solvation = -18715.715391 eV Core-core repulsion = 15782.445296 eV Total energy + Delta-G solvation = -2933.270095 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 3.40 seconds Orbital eigenvalues (eV) -41.19130 -38.94217 -36.45483 -34.59136 -34.03497 -32.50627 -30.73550 -29.08304 -27.66246 -25.38115 -24.19284 -22.64647 -21.40787 -20.32848 -19.49155 -18.15151 -16.97882 -16.90419 -16.86078 -16.57411 -15.99844 -15.71503 -15.42486 -15.09971 -14.81179 -14.54239 -14.46098 -14.02900 -13.95841 -13.48530 -13.17763 -13.09038 -12.86598 -12.67199 -12.60665 -12.20227 -12.18151 -11.75298 -11.72633 -11.38017 -11.23074 -11.13182 -10.80895 -10.27395 -9.66358 -9.57056 -8.68682 -8.34738 -6.13768 1.25214 1.44083 1.45687 1.55484 1.56966 2.12490 2.27417 2.99184 3.24748 3.54495 3.65264 3.77059 3.88263 4.05746 4.13113 4.23938 4.28943 4.33218 4.41820 4.44051 4.54725 4.62173 4.69530 4.83969 4.86159 4.92923 5.01286 5.09140 5.13474 5.22550 5.33090 5.40800 5.54681 5.61678 6.19166 6.28230 6.30380 6.62233 7.05982 7.14450 8.74431 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038482 B = 0.003405 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.438838 B = 8222.289137 C = 8668.182467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.155 6.155 10 C -0.122 4.122 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.606 5.606 14 C 0.108 3.892 15 C -0.122 4.122 16 C -0.078 4.078 17 C -0.106 4.106 18 C 0.059 3.941 19 N -0.866 5.866 20 C -0.125 4.125 21 C 0.099 3.901 22 H 0.271 0.729 23 H 0.108 0.892 24 H 0.105 0.895 25 H 0.086 0.914 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.346 0.654 35 H 0.348 0.652 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.774 -20.476 -1.548 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.072 5.928 10 C -0.273 4.273 11 C 0.318 3.682 12 O -0.449 6.449 13 N -0.341 5.341 14 C -0.014 4.014 15 C -0.160 4.160 16 C -0.097 4.097 17 C -0.144 4.144 18 C -0.071 4.071 19 N -0.397 5.397 20 C -0.163 4.163 21 C -0.023 4.023 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.123 0.877 25 H 0.105 0.895 26 H 0.083 0.917 27 H 0.111 0.889 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 14.387 -20.273 -2.018 24.941 hybrid contribution 1.696 0.846 0.652 2.004 sum 16.083 -19.427 -1.366 25.258 Atomic orbital electron populations 1.70184 1.08034 1.28702 1.47924 1.26161 0.95985 1.03395 0.93686 0.84984 0.77791 0.75540 0.79557 1.18601 1.20399 1.18531 1.23156 0.95319 0.91847 1.59027 0.89860 1.85604 1.10757 0.99379 1.97031 1.23361 1.03308 0.94424 1.06238 1.20162 0.86038 0.86790 0.75259 1.90664 1.17340 1.85838 1.51036 1.48143 1.07454 1.05516 1.72941 1.21706 0.99442 0.80308 0.99994 1.22035 0.96089 1.00747 0.97110 1.21136 0.93856 0.94851 0.99855 1.21523 1.00863 0.94040 0.97939 1.21849 0.99712 0.93562 0.92015 1.58699 1.18622 1.13759 1.48604 1.21964 1.01848 0.94967 0.97531 1.22064 0.77732 1.02005 1.00502 0.91974 0.87418 0.87650 0.89549 0.91730 0.88882 0.93384 0.89308 0.92824 0.90956 0.94548 0.91414 0.84132 0.83854 0.92842 0.88120 0.89605 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.70 13.22 21.65 0.29 -56.41 16 2 C 0.01 0.71 5.49 84.86 0.47 1.18 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 6 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 7 C -0.55 -31.52 9.50 67.96 0.65 -30.87 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 10 C -0.12 -5.05 4.50 71.24 0.32 -4.73 16 11 C 0.53 20.91 7.72 87.66 0.68 21.59 16 12 O -0.57 -27.83 15.27 -3.03 -0.05 -27.88 16 13 N -0.61 -16.91 2.97 -818.81 -2.43 -19.34 16 14 C 0.11 2.53 6.42 86.36 0.55 3.08 16 15 C -0.12 -2.17 5.16 30.78 0.16 -2.01 16 16 C -0.08 -1.04 2.15 -10.66 -0.02 -1.06 16 17 C -0.11 -1.31 4.94 30.60 0.15 -1.16 16 18 C 0.06 0.67 6.54 86.30 0.56 1.24 16 19 N -0.87 -9.75 9.62 -186.72 -1.80 -11.55 16 20 C -0.12 -1.90 5.37 30.69 0.16 -1.74 16 21 C 0.10 1.90 6.34 86.38 0.55 2.45 16 22 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 23 H 0.11 4.01 7.94 -2.39 -0.02 3.99 16 24 H 0.11 3.97 7.69 -2.39 -0.02 3.96 16 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.91 7.00 -2.39 -0.02 1.89 16 27 H 0.09 1.32 6.52 -2.39 -0.02 1.30 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.07 0.87 6.53 -2.39 -0.02 0.85 16 34 H 0.35 3.00 8.99 -89.70 -0.81 2.19 16 35 H 0.35 2.93 9.08 -89.68 -0.81 2.11 16 36 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.09 1.74 5.93 -2.39 -0.01 1.73 16 39 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -77.12 325.77 0.53 -76.59 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -0.57 Total: 14.82 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.23 Total: -12.04 kcal Atomic # 7 Polarization: -83.36 SS G_CDS: -3.94 Total: -87.30 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -77.12 0.53 -76.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701013519.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.680 kcal (2) G-P(sol) polarization free energy of solvation -77.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.40 seconds