Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47469 * 2 1 4 4 N 1.46904 * 109.46772 * 120.00367 * 2 1 3 5 5 C 1.53002 * 109.47055 * 239.99759 * 2 1 3 6 6 C 1.53043 * 109.44839 * 300.06479 * 5 2 1 7 7 C 1.53192 * 109.30860 * 178.62233 * 6 5 2 8 8 N 1.46926 * 108.77820 * 54.63429 * 7 6 5 9 9 C 1.34779 * 120.63044 * 126.36870 * 8 7 6 10 10 O 1.21283 * 119.99742 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00186 * 180.02562 * 9 8 7 12 12 S 1.81002 * 109.47356 * 179.97438 * 11 9 8 13 13 C 1.76193 * 100.00005 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00360 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99723 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47016 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.47551 * 210.00320 * 17 15 13 20 20 H 1.48507 * 109.47398 * 330.00359 * 17 15 13 21 21 C 1.46925 * 118.73914 * 306.39111 * 8 7 6 22 22 C 1.53037 * 109.45951 * 180.02562 * 5 2 1 23 23 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47391 * 300.00090 * 1 2 3 25 25 H 1.09005 * 109.46794 * 59.99889 * 1 2 3 26 26 H 1.00896 * 110.99917 * 59.99369 * 4 2 1 27 27 H 1.00893 * 110.99845 * 183.95724 * 4 2 1 28 28 H 1.09001 * 109.46110 * 60.02910 * 5 2 1 29 29 H 1.09001 * 109.50069 * 58.67352 * 6 5 2 30 30 H 1.09000 * 109.49902 * 298.57033 * 6 5 2 31 31 H 1.09006 * 109.58809 * 294.84764 * 7 6 5 32 32 H 1.09002 * 109.58657 * 174.42750 * 7 6 5 33 33 H 1.08995 * 109.47063 * 300.00414 * 11 9 8 34 34 H 1.09006 * 109.47000 * 59.99630 * 11 9 8 35 35 H 0.96993 * 119.99942 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.58340 * 173.39503 * 21 8 7 37 37 H 1.09003 * 109.58494 * 293.68068 * 21 8 7 38 38 H 1.08997 * 109.49928 * 61.42238 * 22 5 2 39 39 H 1.09005 * 109.52588 * 301.34207 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0400 -0.7213 -1.2492 6 6 1.5283 -2.1636 -1.2495 7 6 2.0121 -2.8726 -2.5183 8 7 3.4740 -2.7510 -2.5998 9 6 4.2470 -3.8453 -2.7466 10 8 3.7368 -4.9436 -2.8132 11 6 5.7451 -3.7042 -2.8281 12 16 6.4956 -5.3400 -3.0213 13 6 8.1978 -4.8898 -3.0872 14 1 8.4851 -3.8513 -3.0126 15 6 9.1696 -5.8696 -3.2360 16 7 10.4413 -5.5333 -3.2847 17 14 8.6728 -7.6656 -3.3658 18 1 8.4538 -8.0168 -4.7919 19 1 9.7512 -8.5192 -2.8057 20 1 7.4184 -7.8886 -2.6028 21 6 4.0774 -1.4139 -2.5178 22 6 3.5704 -0.7217 -1.2487 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6960 -1.6480 1.2227 27 1 3.0261 -0.6502 1.2559 28 1 1.6770 -0.2071 -2.1391 29 1 0.4385 -2.1631 -1.2261 30 1 1.9112 -2.6857 -0.3726 31 1 1.5574 -2.4072 -3.3929 32 1 1.7347 -3.9259 -2.4767 33 1 6.0054 -3.0813 -3.6838 34 1 6.1166 -3.2400 -1.9144 35 1 11.1204 -6.2181 -3.3884 36 1 5.1628 -1.5047 -2.4758 37 1 3.7931 -0.8304 -3.3935 38 1 3.9338 -1.2576 -0.3718 39 1 3.9350 0.3053 -1.2243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701014040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = -49.468756 kcal Electronic energy + Delta-G solvation = -19143.696580 eV Core-core repulsion = 16211.718683 eV Total energy + Delta-G solvation = -2931.977897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.28764 -38.37173 -35.60757 -32.45962 -32.00628 -31.41673 -29.53039 -28.77984 -25.68928 -25.42807 -23.46414 -22.16208 -20.10125 -18.96938 -17.72162 -16.86231 -16.37342 -15.59750 -15.47085 -15.12403 -14.97404 -14.78765 -14.42339 -14.13158 -13.80400 -13.29941 -13.13876 -12.80171 -12.67599 -12.36296 -12.11348 -12.00819 -11.72648 -11.42677 -11.31929 -11.25990 -11.02436 -10.79178 -10.63098 -10.54498 -9.87394 -9.48946 -9.02240 -8.95600 -8.61871 -8.51155 -6.94322 -6.30809 -4.02799 2.69017 2.90243 3.17935 3.31863 3.49135 3.57007 4.22618 4.31014 4.33417 4.40868 4.56759 4.62750 4.82970 4.96154 5.02018 5.08291 5.08918 5.10276 5.15715 5.32650 5.39756 5.50944 5.57808 5.60939 5.62996 5.71281 5.72834 5.75105 5.88396 5.94171 5.95932 6.06400 6.54454 6.88824 7.17055 7.43998 7.92221 8.39185 8.41213 9.15419 10.78439 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037858 B = 0.003898 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.428765 B = 7181.823173 C = 7468.014462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.092 3.908 3 H 0.079 0.921 4 N -0.845 5.845 5 C -0.123 4.123 6 C -0.132 4.132 7 C 0.114 3.886 8 N -0.618 5.618 9 C 0.533 3.467 10 O -0.520 6.520 11 C -0.121 4.121 12 S -0.143 6.143 13 C -0.521 4.521 14 H 0.088 0.912 15 C 0.096 3.904 16 N -0.880 5.880 17 Si 0.857 3.143 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.235 1.235 21 C 0.108 3.892 22 C -0.133 4.133 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.340 0.660 27 H 0.342 0.658 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.168 12.696 4.492 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 H 0.097 0.903 4 N -0.376 5.376 5 C -0.144 4.144 6 C -0.170 4.170 7 C -0.009 4.009 8 N -0.354 5.354 9 C 0.321 3.679 10 O -0.395 6.395 11 C -0.272 4.272 12 S 0.084 5.916 13 C -0.669 4.669 14 H 0.106 0.894 15 C -0.113 4.113 16 N -0.517 5.517 17 Si 0.681 3.319 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.159 1.159 21 C -0.016 4.016 22 C -0.171 4.171 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.145 11.548 4.793 22.866 hybrid contribution 1.276 0.015 -0.760 1.485 sum -17.869 11.564 4.033 21.663 Atomic orbital electron populations 1.21856 0.94617 1.02145 1.01852 1.21450 0.95433 0.97748 0.87364 0.90285 1.59005 1.16498 1.21665 1.40423 1.21967 0.95526 0.96590 1.00286 1.22034 1.00962 0.95347 0.98642 1.21504 0.79989 1.02460 0.96964 1.48071 1.06452 1.06531 1.74324 1.20311 0.88796 0.83624 0.75191 1.90685 1.74850 1.25394 1.48540 1.23305 0.93373 1.05055 1.05433 1.84800 1.05061 1.05466 1.96312 1.22304 0.88566 0.97938 1.58081 0.89420 1.24709 0.94031 0.99334 0.93201 1.69936 0.99627 1.34477 1.47647 0.86735 0.80486 0.84429 0.80202 1.19196 1.19910 1.15935 1.21715 0.99183 0.83052 0.97600 1.21996 0.95445 1.01064 0.98590 0.92433 0.92058 0.92331 0.84631 0.84486 0.90552 0.90437 0.91644 0.91883 0.88943 0.88607 0.88600 0.91917 0.89116 0.91387 0.91451 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.14 37.16 0.34 -0.63 16 2 C 0.09 0.65 3.23 -67.71 -0.22 0.43 16 3 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 4 N -0.85 -6.64 9.06 -4.66 -0.04 -6.68 16 5 C -0.12 -0.91 2.03 -90.58 -0.18 -1.09 16 6 C -0.13 -1.12 4.67 -26.61 -0.12 -1.24 16 7 C 0.11 1.27 6.43 -3.71 -0.02 1.25 16 8 N -0.62 -8.20 2.97 -172.77 -0.51 -8.71 16 9 C 0.53 9.65 7.72 -10.99 -0.08 9.57 16 10 O -0.52 -11.32 15.28 5.56 0.08 -11.24 16 11 C -0.12 -2.36 4.50 36.00 0.16 -2.20 16 12 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 13 C -0.52 -14.99 10.04 30.94 0.31 -14.68 16 14 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 15 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 16 N -0.88 -26.52 13.97 55.49 0.78 -25.75 16 17 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 21 C 0.11 1.10 6.34 -3.71 -0.02 1.08 16 22 C -0.13 -1.07 4.98 -26.61 -0.13 -1.21 16 23 H 0.06 0.38 6.40 -51.93 -0.33 0.05 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.34 2.68 7.20 -39.29 -0.28 2.39 16 27 H 0.34 2.61 7.43 -39.30 -0.29 2.32 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.56 6.36 -51.93 -0.33 0.23 16 30 H 0.06 0.62 6.74 -51.93 -0.35 0.27 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 33 H 0.10 1.75 7.94 -51.92 -0.41 1.33 16 34 H 0.10 1.74 7.69 -51.91 -0.40 1.34 16 35 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 36 H 0.09 0.97 5.93 -51.93 -0.31 0.66 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.60 6.84 -51.93 -0.36 0.25 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 315.97 15.07 4.76 4.76 Total: -1.00 -32.89 315.97 -7.68 -40.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.96 Total: 1.61 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: -0.08 Total: -6.02 kcal Atomic # 7 Polarization: -41.36 SS G_CDS: 0.22 Total: -41.14 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.89 -7.68 -40.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701014040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.895 kcal (2) G-P(sol) polarization free energy of solvation -32.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds