Wall clock time and date at job start Mon Mar 30 2020 05:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47469 * 2 1 4 4 N 1.46904 * 109.46772 * 120.00367 * 2 1 3 5 5 C 1.53002 * 109.47055 * 239.99759 * 2 1 3 6 6 C 1.53043 * 109.44839 * 300.06479 * 5 2 1 7 7 C 1.53192 * 109.30860 * 178.62233 * 6 5 2 8 8 N 1.46926 * 108.77820 * 54.63429 * 7 6 5 9 9 C 1.34779 * 120.63044 * 126.36870 * 8 7 6 10 10 O 1.21283 * 119.99742 * 0.02562 * 9 8 7 11 11 C 1.50696 * 120.00186 * 180.02562 * 9 8 7 12 12 S 1.81002 * 109.47356 * 179.97438 * 11 9 8 13 13 C 1.76193 * 100.00005 * 180.02562 * 12 11 9 14 14 H 1.08003 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.38800 * 120.00295 * 180.02562 * 13 12 11 16 16 N 1.31631 * 120.00360 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99723 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47016 * 90.00257 * 17 15 13 19 19 H 1.48497 * 109.47551 * 210.00320 * 17 15 13 20 20 H 1.48507 * 109.47398 * 330.00359 * 17 15 13 21 21 C 1.46925 * 118.73914 * 306.39111 * 8 7 6 22 22 C 1.53037 * 109.45951 * 180.02562 * 5 2 1 23 23 H 1.08999 * 109.47389 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47391 * 300.00090 * 1 2 3 25 25 H 1.09005 * 109.46794 * 59.99889 * 1 2 3 26 26 H 1.00896 * 110.99917 * 59.99369 * 4 2 1 27 27 H 1.00893 * 110.99845 * 183.95724 * 4 2 1 28 28 H 1.09001 * 109.46110 * 60.02910 * 5 2 1 29 29 H 1.09001 * 109.50069 * 58.67352 * 6 5 2 30 30 H 1.09000 * 109.49902 * 298.57033 * 6 5 2 31 31 H 1.09006 * 109.58809 * 294.84764 * 7 6 5 32 32 H 1.09002 * 109.58657 * 174.42750 * 7 6 5 33 33 H 1.08995 * 109.47063 * 300.00414 * 11 9 8 34 34 H 1.09006 * 109.47000 * 59.99630 * 11 9 8 35 35 H 0.96993 * 119.99942 * 179.97438 * 16 15 13 36 36 H 1.08998 * 109.58340 * 173.39503 * 21 8 7 37 37 H 1.09003 * 109.58494 * 293.68068 * 21 8 7 38 38 H 1.08997 * 109.49928 * 61.42238 * 22 5 2 39 39 H 1.09005 * 109.52588 * 301.34207 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0400 -0.7213 -1.2492 6 6 1.5283 -2.1636 -1.2495 7 6 2.0121 -2.8726 -2.5183 8 7 3.4740 -2.7510 -2.5998 9 6 4.2470 -3.8453 -2.7466 10 8 3.7368 -4.9436 -2.8132 11 6 5.7451 -3.7042 -2.8281 12 16 6.4956 -5.3400 -3.0213 13 6 8.1978 -4.8898 -3.0872 14 1 8.4851 -3.8513 -3.0126 15 6 9.1696 -5.8696 -3.2360 16 7 10.4413 -5.5333 -3.2847 17 14 8.6728 -7.6656 -3.3658 18 1 8.4538 -8.0168 -4.7919 19 1 9.7512 -8.5192 -2.8057 20 1 7.4184 -7.8886 -2.6028 21 6 4.0774 -1.4139 -2.5178 22 6 3.5704 -0.7217 -1.2487 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.6960 -1.6480 1.2227 27 1 3.0261 -0.6502 1.2559 28 1 1.6770 -0.2071 -2.1391 29 1 0.4385 -2.1631 -1.2261 30 1 1.9112 -2.6857 -0.3726 31 1 1.5574 -2.4072 -3.3929 32 1 1.7347 -3.9259 -2.4767 33 1 6.0054 -3.0813 -3.6838 34 1 6.1166 -3.2400 -1.9144 35 1 11.1204 -6.2181 -3.3884 36 1 5.1628 -1.5047 -2.4758 37 1 3.7931 -0.8304 -3.3935 38 1 3.9338 -1.2576 -0.3718 39 1 3.9350 0.3053 -1.2243 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701014040.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:20 Heat of formation + Delta-G solvation = -72.676715 kcal Electronic energy + Delta-G solvation = -19144.702953 eV Core-core repulsion = 16211.718683 eV Total energy + Delta-G solvation = -2932.984270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.35069 -39.38805 -36.59026 -34.69391 -33.00218 -32.23179 -30.56282 -29.67035 -27.88291 -26.30629 -24.31550 -22.97717 -21.04927 -20.10705 -19.46110 -18.22335 -17.26997 -17.06552 -16.74377 -16.55611 -15.92659 -15.73957 -15.41005 -15.15043 -15.00613 -14.91847 -14.41664 -14.14050 -13.54055 -13.45390 -13.34734 -13.06020 -12.99589 -12.69972 -12.65220 -12.38019 -12.10604 -11.97371 -11.87629 -11.49631 -11.27522 -11.19106 -10.89918 -10.54414 -9.77024 -9.49953 -9.03128 -8.53577 -6.24984 0.95291 1.29745 1.44238 1.48664 1.52552 2.05259 2.23355 2.65762 2.84717 3.47450 3.63168 3.70169 3.81363 3.93541 4.06862 4.14373 4.26337 4.32920 4.38917 4.44914 4.48598 4.59743 4.76072 4.80731 4.84644 4.92757 5.00941 5.03492 5.07845 5.24900 5.40070 5.42063 5.55891 5.68778 6.09051 6.22859 6.32619 6.57766 6.91619 7.05444 8.58875 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.037858 B = 0.003898 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.428765 B = 7181.823173 C = 7468.014462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.095 3.905 3 H 0.083 0.917 4 N -0.853 5.853 5 C -0.114 4.114 6 C -0.123 4.123 7 C 0.109 3.891 8 N -0.603 5.603 9 C 0.532 3.468 10 O -0.565 6.565 11 C -0.105 4.105 12 S -0.177 6.177 13 C -0.529 4.529 14 H 0.062 0.938 15 C 0.047 3.953 16 N -0.916 5.916 17 Si 0.914 3.086 18 H -0.262 1.262 19 H -0.258 1.258 20 H -0.238 1.238 21 C 0.099 3.901 22 C -0.128 4.128 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.339 0.661 27 H 0.342 0.658 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.277 0.723 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.825 13.982 4.543 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 H 0.101 0.899 4 N -0.384 5.384 5 C -0.135 4.135 6 C -0.161 4.161 7 C -0.013 4.013 8 N -0.337 5.337 9 C 0.319 3.681 10 O -0.444 6.444 11 C -0.256 4.256 12 S 0.049 5.951 13 C -0.676 4.676 14 H 0.081 0.919 15 C -0.159 4.159 16 N -0.554 5.554 17 Si 0.735 3.265 18 H -0.187 1.187 19 H -0.182 1.182 20 H -0.162 1.162 21 C -0.023 4.023 22 C -0.166 4.166 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.089 0.911 26 H 0.152 0.848 27 H 0.156 0.844 28 H 0.108 0.892 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.816 12.896 4.854 24.963 hybrid contribution 1.712 -0.194 -0.759 1.883 sum -19.104 12.702 4.095 23.304 Atomic orbital electron populations 1.21849 0.94151 1.02171 1.02162 1.21451 0.95746 0.97706 0.86716 0.89851 1.59031 1.16612 1.21691 1.41026 1.21912 0.94812 0.95691 1.01071 1.21978 1.01953 0.95689 0.96503 1.21709 0.78432 1.01780 0.99342 1.48096 1.07221 1.06463 1.71940 1.20031 0.88253 0.84246 0.75547 1.90669 1.75255 1.27266 1.51251 1.23268 0.94460 1.01151 1.06719 1.84727 1.03225 1.10585 1.96517 1.22435 0.90633 0.96920 1.57622 0.91930 1.25545 0.94049 1.03345 0.92918 1.70009 1.00647 1.36091 1.48666 0.85880 0.80379 0.79811 0.80384 1.18666 1.18204 1.16190 1.22022 0.98886 0.81570 0.99807 1.21975 0.96011 1.01747 0.96854 0.92526 0.92697 0.91130 0.84767 0.84448 0.89229 0.88679 0.92831 0.89777 0.91314 0.87206 0.87248 0.91305 0.89749 0.89118 0.92408 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.14 71.98 0.66 -0.86 16 2 C 0.10 1.08 3.23 44.92 0.15 1.22 16 3 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 4 N -0.85 -11.80 9.06 -168.67 -1.53 -13.32 16 5 C -0.11 -1.31 2.03 -10.77 -0.02 -1.33 16 6 C -0.12 -1.80 4.67 30.67 0.14 -1.66 16 7 C 0.11 2.25 6.43 86.36 0.56 2.80 16 8 N -0.60 -14.99 2.97 -818.89 -2.43 -17.42 16 9 C 0.53 18.94 7.72 87.66 0.68 19.61 16 10 O -0.57 -24.78 15.28 -3.04 -0.05 -24.83 16 11 C -0.11 -4.05 4.50 71.23 0.32 -3.73 16 12 S -0.18 -9.06 18.55 -56.49 -1.05 -10.11 16 13 C -0.53 -30.85 10.04 67.95 0.68 -30.17 16 14 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 15 C 0.05 2.76 5.50 84.86 0.47 3.23 16 16 N -0.92 -55.77 13.97 21.65 0.30 -55.46 16 17 Si 0.91 45.14 27.74 68.60 1.90 47.04 16 18 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 21 C 0.10 1.75 6.34 86.36 0.55 2.30 16 22 C -0.13 -1.69 4.98 30.67 0.15 -1.54 16 23 H 0.06 0.60 6.40 -2.39 -0.02 0.58 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 26 H 0.34 4.82 7.20 -89.70 -0.65 4.18 16 27 H 0.34 4.64 7.43 -89.70 -0.67 3.97 16 28 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 1.11 6.36 -2.39 -0.02 1.09 16 30 H 0.05 0.94 6.74 -2.39 -0.02 0.92 16 31 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 32 H 0.07 1.79 7.01 -2.39 -0.02 1.77 16 33 H 0.11 3.91 7.94 -2.40 -0.02 3.89 16 34 H 0.11 3.90 7.69 -2.39 -0.02 3.88 16 35 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.08 1.62 5.93 -2.39 -0.01 1.61 16 37 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 0.91 6.84 -2.39 -0.02 0.89 16 39 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -71.69 315.97 1.19 -70.50 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.29 Total: 13.72 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 4.33 Total: -10.12 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -3.66 Total: -86.21 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.90 Total: 47.04 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.05 Total: -10.11 kcal Total: -71.69 1.19 -70.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701014040.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.173 kcal (2) G-P(sol) polarization free energy of solvation -71.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds