Wall clock time and date at job start Mon Mar 30 2020 04:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99880 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99917 * 0.02562 * 11 10 9 13 13 C 1.50703 * 120.00072 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.46886 * 180.02562 * 13 11 10 15 15 C 1.46904 * 110.99459 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46707 * 179.97438 * 15 14 13 17 17 C 1.53007 * 109.47016 * 179.97438 * 16 15 14 18 18 H 1.08997 * 108.85102 * 305.70642 * 17 16 15 19 19 C 1.52938 * 108.88887 * 187.12334 * 17 16 15 20 20 C 1.54994 * 109.04311 * 208.99583 * 19 17 16 21 21 S 1.83988 * 100.82057 * 41.61103 * 20 19 17 22 22 C 1.53714 * 108.88323 * 64.27943 * 17 16 15 23 23 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 25 25 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 26 26 H 0.97002 * 120.00079 * 0.02562 * 10 9 7 27 27 H 1.08995 * 109.46839 * 300.00362 * 13 11 10 28 28 H 1.08998 * 109.46706 * 59.99946 * 13 11 10 29 29 H 1.00898 * 111.00098 * 303.95179 * 14 13 11 30 30 H 1.09000 * 109.46992 * 299.99659 * 15 14 13 31 31 H 1.09001 * 109.47155 * 59.99916 * 15 14 13 32 32 H 1.08992 * 109.47453 * 299.99982 * 16 15 14 33 33 H 1.09001 * 109.47193 * 60.00170 * 16 15 14 34 34 H 1.09001 * 109.60404 * 329.04441 * 19 17 16 35 35 H 1.09007 * 109.60022 * 89.17426 * 19 17 16 36 36 H 1.08998 * 111.23262 * 283.69873 * 20 19 17 37 37 H 1.09003 * 111.14462 * 159.48466 * 20 19 17 38 38 H 1.08997 * 110.33929 * 242.49179 * 22 17 16 39 39 H 1.09000 * 110.34175 * 4.64075 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 0.0025 12 8 0.5616 -5.1050 0.0017 13 6 2.7334 -6.0287 0.0032 14 7 1.9989 -7.3009 0.0033 15 6 2.9235 -8.4425 0.0046 16 6 2.1234 -9.7466 0.0053 17 6 3.0863 -10.9357 0.0060 18 1 3.7758 -10.8310 -0.8316 19 6 2.2821 -12.2242 -0.1727 20 6 3.0307 -13.3884 0.5248 21 16 3.5816 -12.5651 2.0752 22 6 3.8899 -10.9243 1.3163 23 1 -0.4850 -0.8401 -0.0004 24 1 0.6241 -2.5566 0.8903 25 1 0.6248 -2.5571 -0.8896 26 1 3.1569 -3.4353 0.0028 27 1 3.3600 -5.9714 -0.8867 28 1 3.3600 -5.9704 0.8932 29 1 1.3622 -7.3508 0.7845 30 1 3.5520 -8.4019 -0.8850 31 1 3.5508 -8.4010 0.8950 32 1 1.4951 -9.7870 0.8950 33 1 1.4958 -9.7884 -0.8849 34 1 1.2947 -12.1038 0.2731 35 1 2.1763 -12.4449 -1.2349 36 1 3.8829 -13.7211 -0.0678 37 1 2.3562 -14.2176 0.7384 38 1 4.9522 -10.7967 1.1082 39 1 3.5347 -10.1291 1.9718 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704788781.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:32 Heat of formation + Delta-G solvation = -85.133064 kcal Electronic energy + Delta-G solvation = -17993.595928 eV Core-core repulsion = 15060.071510 eV Total energy + Delta-G solvation = -2933.524418 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.64981 -38.77500 -36.65307 -36.11958 -34.46032 -32.26667 -29.98104 -28.79308 -27.06625 -25.42795 -24.37011 -22.64790 -21.51522 -20.92709 -19.42518 -18.02590 -17.60455 -17.32454 -17.02054 -16.55426 -15.86417 -15.61622 -15.53916 -15.14137 -14.82406 -14.59684 -14.34022 -14.19565 -14.00544 -13.66025 -13.32279 -13.11328 -12.95499 -12.79802 -12.53641 -12.32337 -11.93247 -11.91895 -11.87594 -11.53544 -11.03833 -10.84014 -10.77821 -10.76509 -9.98266 -9.43071 -8.80752 -8.76129 -6.56506 0.91813 1.40870 1.55634 1.63834 1.67755 1.83327 2.26984 2.56907 3.07121 3.17783 3.58542 3.70369 3.87520 3.87926 4.11642 4.15815 4.26146 4.33457 4.38119 4.46343 4.54267 4.58933 4.72874 4.75611 4.77836 4.85207 4.94395 4.97785 5.08455 5.24792 5.33655 5.43201 5.52944 5.91640 6.07448 6.26526 6.30596 6.80596 7.23351 7.41371 8.58510 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.058871 B = 0.002324 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.500828 B =12045.011560 C =12247.880239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.035 4.035 3 Si 1.131 2.869 4 H -0.287 1.287 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.630 4.630 8 H 0.077 0.923 9 C 0.253 3.747 10 N -0.706 5.706 11 C 0.491 3.509 12 O -0.592 6.592 13 C 0.058 3.942 14 N -0.693 5.693 15 C 0.060 3.940 16 C -0.104 4.104 17 C -0.086 4.086 18 H 0.097 0.903 19 C -0.121 4.121 20 C -0.051 4.051 21 S -0.376 6.376 22 C -0.052 4.052 23 H 0.253 0.747 24 H -0.018 1.018 25 H -0.019 1.019 26 H 0.410 0.590 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.344 0.656 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.752 -24.873 -0.715 27.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.233 4.233 3 Si 0.950 3.050 4 H -0.213 1.213 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.667 4.667 8 H 0.096 0.904 9 C 0.130 3.870 10 N -0.357 5.357 11 C 0.279 3.721 12 O -0.473 6.473 13 C -0.074 4.074 14 N -0.325 5.325 15 C -0.069 4.069 16 C -0.142 4.142 17 C -0.107 4.107 18 H 0.115 0.885 19 C -0.159 4.159 20 C -0.199 4.199 21 S -0.150 6.150 22 C -0.200 4.200 23 H 0.063 0.937 24 H 0.000 1.000 25 H -0.001 1.001 26 H 0.246 0.754 27 H 0.141 0.859 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.132 0.868 38 H 0.118 0.882 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.765 -23.817 -0.253 26.566 hybrid contribution 0.105 -1.082 -0.006 1.087 sum 11.870 -24.899 -0.259 27.585 Atomic orbital electron populations 1.70911 1.08312 1.29905 1.47452 1.27689 0.96363 1.07285 0.91972 0.82784 0.73912 0.69915 0.78435 1.21275 1.18766 1.18755 1.22441 0.95626 0.91723 1.56948 0.90447 1.18649 0.89425 0.85714 0.93253 1.46048 1.11063 1.05300 1.73248 1.21576 0.90108 0.84944 0.75511 1.90639 1.19401 1.85401 1.51874 1.21751 0.93863 0.86936 1.04886 1.60133 1.20047 1.00772 1.51565 1.22152 0.94121 0.88842 1.01742 1.21604 0.97637 0.92112 1.02857 1.21604 0.97086 0.95130 0.96830 0.88492 1.22429 0.99430 0.91364 1.02724 1.24395 1.03116 1.00118 0.92262 1.88199 1.89170 1.15173 1.22492 1.24160 1.03901 0.93813 0.98153 0.93746 1.00011 1.00074 0.75402 0.85937 0.89754 0.83803 0.89693 0.93837 0.92283 0.90907 0.90876 0.88112 0.87813 0.86846 0.88176 0.88596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.00 13.65 21.45 0.29 -57.71 16 2 C -0.03 -1.96 5.46 84.65 0.46 -1.50 16 3 Si 1.13 47.73 29.90 68.60 2.05 49.78 16 4 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 7 C -0.63 -34.56 9.28 25.60 0.24 -34.32 16 8 H 0.08 3.85 7.60 -2.91 -0.02 3.83 16 9 C 0.25 13.84 4.74 85.63 0.41 14.25 16 10 N -0.71 -29.46 5.55 -466.78 -2.59 -32.05 16 11 C 0.49 19.17 7.87 87.66 0.69 19.86 16 12 O -0.59 -29.07 16.20 -3.04 -0.05 -29.12 16 13 C 0.06 1.43 6.17 85.56 0.53 1.96 16 14 N -0.69 -16.87 6.13 -517.92 -3.17 -20.04 16 15 C 0.06 0.93 5.46 86.30 0.47 1.40 16 16 C -0.10 -1.45 4.50 30.60 0.14 -1.31 16 17 C -0.09 -0.90 2.68 -10.57 -0.03 -0.93 16 18 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 19 C -0.12 -1.15 5.78 31.26 0.18 -0.97 16 20 C -0.05 -0.53 7.52 72.66 0.55 0.02 16 21 S -0.38 -6.49 23.22 -56.49 -1.31 -7.80 16 22 C -0.05 -0.67 6.33 72.22 0.46 -0.21 16 23 H 0.25 16.42 7.22 -92.70 -0.67 15.75 16 24 H -0.02 -1.09 8.01 -2.39 -0.02 -1.11 16 25 H -0.02 -1.13 8.01 -2.39 -0.02 -1.15 16 26 H 0.41 14.01 8.32 -92.71 -0.77 13.23 16 27 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.34 9.18 8.43 -89.70 -0.76 8.42 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 0.58 6.78 -2.39 -0.02 0.57 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.14 8.13 -2.39 -0.02 1.12 16 34 H 0.07 0.85 7.83 -2.39 -0.02 0.83 16 35 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.32 6.75 -2.39 -0.02 1.30 16 Total: -1.00 -74.85 332.11 -1.07 -75.93 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.38 Total: 22.76 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 4.09 Total: -1.75 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -5.47 Total: -109.79 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.05 Total: -29.12 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.05 Total: 49.78 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -1.31 Total: -7.80 kcal Total: -74.85 -1.07 -75.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704788781.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.207 kcal (2) G-P(sol) polarization free energy of solvation -74.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds