Wall clock time and date at job start Mon Mar 30 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46348 * 2 1 4 4 N 1.46502 * 109.46977 * 64.99570 * 3 2 1 5 5 C 1.34779 * 119.99591 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.99668 * 180.02562 * 5 4 3 8 8 S 1.80998 * 109.47019 * 180.02562 * 7 5 4 9 9 C 1.76197 * 99.99767 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00377 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99800 * 179.97438 * 9 8 7 12 12 N 1.31635 * 120.00133 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47148 * 90.00134 * 13 11 9 15 15 H 1.48505 * 109.47233 * 210.00233 * 13 11 9 16 16 H 1.48502 * 109.47073 * 330.00241 * 13 11 9 17 17 C 1.53034 * 109.46577 * 240.02167 * 2 1 3 18 18 C 1.53120 * 109.27691 * 299.16320 * 17 2 1 19 19 C 1.53123 * 109.15984 * 302.34566 * 18 17 2 20 20 C 1.53036 * 109.27927 * 57.65420 * 19 18 17 21 21 N 1.46847 * 109.52359 * 300.81865 * 20 19 18 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.98051 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.98032 * 1 2 3 25 25 H 1.09001 * 109.47200 * 184.99695 * 3 2 1 26 26 H 1.09000 * 109.46830 * 304.99743 * 3 2 1 27 27 H 0.97001 * 120.00188 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.46862 * 299.99843 * 7 5 4 29 29 H 1.09004 * 109.47271 * 59.99654 * 7 5 4 30 30 H 0.96993 * 120.00061 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.50471 * 59.10297 * 17 2 1 32 32 H 1.09002 * 109.50678 * 179.22292 * 17 2 1 33 33 H 1.08996 * 109.52367 * 62.24699 * 18 17 2 34 34 H 1.08994 * 109.52636 * 182.44107 * 18 17 2 35 35 H 1.09004 * 109.50391 * 177.59763 * 19 18 17 36 36 H 1.09001 * 109.49990 * 297.66957 * 19 18 17 37 37 H 1.09002 * 109.46114 * 60.83641 * 20 19 18 38 38 H 1.09000 * 109.46122 * 180.80410 * 20 19 18 39 39 H 1.00899 * 111.00201 * 297.65111 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.6520 2.0976 1.2518 5 6 1.9959 3.3815 1.4752 6 8 2.6259 3.9947 0.6397 7 6 1.5975 4.0550 2.7631 8 16 2.2005 5.7616 2.7630 9 6 1.6108 6.2944 4.3356 10 1 1.0582 5.6123 4.9646 11 6 1.8566 7.5910 4.7660 12 7 1.4166 7.9890 5.9411 13 14 2.8131 8.7706 3.6784 14 1 1.8707 9.5066 2.7978 15 1 3.5540 9.7373 4.5282 16 1 3.7750 8.0059 2.8446 17 6 2.0400 -0.7210 -1.2498 18 6 1.5443 -2.1697 -1.2353 19 6 2.0270 -2.8531 0.0471 20 6 1.5174 -2.0703 1.2594 21 7 2.0193 -0.6916 1.1995 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5141 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 3.1261 1.4441 -0.0895 26 1 1.6051 1.9815 -0.8419 27 1 1.1485 1.6070 1.9201 28 1 0.5112 4.0539 2.8528 29 1 2.0321 3.5157 3.6048 30 1 1.5880 8.8951 6.2417 31 1 1.6638 -0.2166 -2.1399 32 1 3.1299 -0.7093 -1.2575 33 1 0.4549 -2.1823 -1.2669 34 1 1.9410 -2.6991 -2.1016 35 1 1.6415 -3.8721 0.0836 36 1 3.1167 -2.8756 0.0595 37 1 0.4274 -2.0606 1.2534 38 1 1.8712 -2.5462 2.1739 39 1 3.0272 -0.6714 1.2426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706014455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:41 Heat of formation + Delta-G solvation = -51.861171 kcal Electronic energy + Delta-G solvation = -18861.394728 eV Core-core repulsion = 15929.313088 eV Total energy + Delta-G solvation = -2932.081640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.29159 -38.77214 -34.82977 -32.40025 -32.18525 -32.06271 -29.41326 -28.00955 -25.94667 -25.47819 -23.65851 -21.63758 -20.25128 -19.36233 -17.86892 -16.58664 -16.27028 -15.73892 -15.37252 -15.23537 -14.90425 -14.84522 -14.45676 -13.81506 -13.50804 -13.30108 -13.05998 -12.78184 -12.72395 -12.33027 -12.22461 -12.01901 -11.80504 -11.54925 -11.35873 -11.22052 -10.97237 -10.82634 -10.65407 -10.50700 -9.81599 -9.42504 -8.96689 -8.80648 -8.65716 -8.44109 -6.86180 -6.24896 -3.95800 2.84845 3.09987 3.35489 3.39799 3.54178 3.70487 3.90070 4.28577 4.37182 4.43356 4.52834 4.65545 4.80407 4.83802 4.86237 5.05608 5.14195 5.17753 5.29938 5.39536 5.44356 5.52073 5.57195 5.60189 5.64835 5.70511 5.71839 5.78205 5.85607 5.86776 6.05999 6.11139 6.62968 6.77779 7.07595 7.81783 7.98474 8.46312 8.63417 9.21535 10.84465 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047561 B = 0.003390 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.570373 B = 8257.576256 C = 8554.383914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.102 3.898 3 C 0.136 3.864 4 N -0.723 5.723 5 C 0.528 3.472 6 O -0.527 6.527 7 C -0.122 4.122 8 S -0.144 6.144 9 C -0.520 4.520 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.882 5.882 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.235 1.235 17 C -0.144 4.144 18 C -0.119 4.119 19 C -0.159 4.159 20 C 0.054 3.946 21 N -0.675 5.675 22 H 0.061 0.939 23 H 0.061 0.939 24 H 0.066 0.934 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.406 0.594 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.270 0.730 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 -22.851 -12.709 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.010 3.990 3 C 0.011 3.989 4 N -0.378 5.378 5 C 0.314 3.686 6 O -0.402 6.402 7 C -0.273 4.273 8 S 0.082 5.918 9 C -0.667 4.667 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.519 5.519 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.184 4.184 18 C -0.157 4.157 19 C -0.198 4.198 20 C -0.075 4.075 21 N -0.305 5.305 22 H 0.080 0.920 23 H 0.080 0.920 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.242 0.758 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.465 -21.425 -13.542 25.350 hybrid contribution -0.055 -0.790 0.333 0.859 sum -0.521 -22.216 -13.209 25.851 Atomic orbital electron populations 1.21951 0.93271 1.02173 1.02684 1.21164 0.96126 0.92824 0.88863 1.21258 0.99744 0.90332 0.87580 1.45806 1.59067 1.12404 1.20497 1.20267 0.78841 0.81208 0.88258 1.90686 1.39027 1.64084 1.46445 1.23261 1.04933 1.01627 0.97454 1.84756 1.74182 1.05802 1.27015 1.22337 1.41234 1.01600 1.01575 0.89400 1.24718 0.94651 0.97254 0.94733 1.69942 1.44601 1.18729 1.18596 0.86730 0.81820 0.81953 0.81314 1.19244 1.20006 1.15900 1.22190 1.01109 0.96211 0.98912 1.21571 1.01209 0.95251 0.97653 1.22267 1.01113 0.99982 0.96424 1.22074 1.00966 0.87563 0.96933 1.60595 1.15657 1.15537 1.38684 0.92009 0.91987 0.91546 0.91923 0.91224 0.75817 0.88651 0.88486 0.91990 0.91000 0.91634 0.91472 0.92018 0.91568 0.92050 0.90426 0.90636 0.83728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 7.74 37.16 0.29 -0.85 16 2 C 0.10 0.83 0.60 -131.61 -0.08 0.75 16 3 C 0.14 1.54 4.71 -4.04 -0.02 1.52 16 4 N -0.72 -9.60 5.12 -60.29 -0.31 -9.91 16 5 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 6 O -0.53 -11.64 15.86 5.56 0.09 -11.55 16 7 C -0.12 -2.44 6.16 36.01 0.22 -2.21 16 8 S -0.14 -3.72 18.55 -107.50 -1.99 -5.72 16 9 C -0.52 -15.22 10.04 30.94 0.31 -14.91 16 10 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 11 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 12 N -0.88 -26.95 13.97 55.49 0.78 -26.17 16 13 Si 0.86 22.08 27.74 -169.99 -4.71 17.37 16 14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 16 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 17 C -0.14 -1.03 4.88 -26.65 -0.13 -1.16 16 18 C -0.12 -0.73 5.70 -26.61 -0.15 -0.89 16 19 C -0.16 -0.93 6.08 -26.65 -0.16 -1.09 16 20 C 0.05 0.35 6.26 -3.83 -0.02 0.33 16 21 N -0.67 -5.35 5.75 -99.99 -0.57 -5.93 16 22 H 0.06 0.43 4.80 -51.93 -0.25 0.18 16 23 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.07 0.58 7.18 -51.93 -0.37 0.21 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.41 4.70 7.32 -40.82 -0.30 4.40 16 28 H 0.10 1.78 8.14 -51.91 -0.42 1.35 16 29 H 0.10 1.82 8.14 -51.91 -0.42 1.40 16 30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.41 6.56 -51.93 -0.34 0.07 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.52 6.19 -51.93 -0.32 0.20 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.34 2.76 8.79 -39.29 -0.35 2.41 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -33.16 320.17 -7.99 -41.15 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -6.16 Total: 2.15 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.07 Total: -6.21 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: -0.11 Total: -42.01 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.37 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.16 -7.99 -41.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706014455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.711 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds