Wall clock time and date at job start Mon Mar 30 2020 04:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46348 * 2 1 4 4 N 1.46502 * 109.46977 * 64.99570 * 3 2 1 5 5 C 1.34779 * 119.99591 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00092 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.99668 * 180.02562 * 5 4 3 8 8 S 1.80998 * 109.47019 * 180.02562 * 7 5 4 9 9 C 1.76197 * 99.99767 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00377 * 359.97438 * 9 8 7 11 11 C 1.38804 * 119.99800 * 179.97438 * 9 8 7 12 12 N 1.31635 * 120.00133 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00030 * 359.97438 * 11 9 8 14 14 H 1.48501 * 109.47148 * 90.00134 * 13 11 9 15 15 H 1.48505 * 109.47233 * 210.00233 * 13 11 9 16 16 H 1.48502 * 109.47073 * 330.00241 * 13 11 9 17 17 C 1.53034 * 109.46577 * 240.02167 * 2 1 3 18 18 C 1.53120 * 109.27691 * 299.16320 * 17 2 1 19 19 C 1.53123 * 109.15984 * 302.34566 * 18 17 2 20 20 C 1.53036 * 109.27927 * 57.65420 * 19 18 17 21 21 N 1.46847 * 109.52359 * 300.81865 * 20 19 18 22 22 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46832 * 59.98051 * 1 2 3 24 24 H 1.09004 * 109.47261 * 299.98032 * 1 2 3 25 25 H 1.09001 * 109.47200 * 184.99695 * 3 2 1 26 26 H 1.09000 * 109.46830 * 304.99743 * 3 2 1 27 27 H 0.97001 * 120.00188 * 0.02562 * 4 3 2 28 28 H 1.09001 * 109.46862 * 299.99843 * 7 5 4 29 29 H 1.09004 * 109.47271 * 59.99654 * 7 5 4 30 30 H 0.96993 * 120.00061 * 180.02562 * 12 11 9 31 31 H 1.08996 * 109.50471 * 59.10297 * 17 2 1 32 32 H 1.09002 * 109.50678 * 179.22292 * 17 2 1 33 33 H 1.08996 * 109.52367 * 62.24699 * 18 17 2 34 34 H 1.08994 * 109.52636 * 182.44107 * 18 17 2 35 35 H 1.09004 * 109.50391 * 177.59763 * 19 18 17 36 36 H 1.09001 * 109.49990 * 297.66957 * 19 18 17 37 37 H 1.09002 * 109.46114 * 60.83641 * 20 19 18 38 38 H 1.09000 * 109.46122 * 180.80410 * 20 19 18 39 39 H 1.00899 * 111.00201 * 297.65111 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 7 1.6520 2.0976 1.2518 5 6 1.9959 3.3815 1.4752 6 8 2.6259 3.9947 0.6397 7 6 1.5975 4.0550 2.7631 8 16 2.2005 5.7616 2.7630 9 6 1.6108 6.2944 4.3356 10 1 1.0582 5.6123 4.9646 11 6 1.8566 7.5910 4.7660 12 7 1.4166 7.9890 5.9411 13 14 2.8131 8.7706 3.6784 14 1 1.8707 9.5066 2.7978 15 1 3.5540 9.7373 4.5282 16 1 3.7750 8.0059 2.8446 17 6 2.0400 -0.7210 -1.2498 18 6 1.5443 -2.1697 -1.2353 19 6 2.0270 -2.8531 0.0471 20 6 1.5174 -2.0703 1.2594 21 7 2.0193 -0.6916 1.1995 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5141 -0.8898 24 1 -0.3634 0.5135 0.8902 25 1 3.1261 1.4441 -0.0895 26 1 1.6051 1.9815 -0.8419 27 1 1.1485 1.6070 1.9201 28 1 0.5112 4.0539 2.8528 29 1 2.0321 3.5157 3.6048 30 1 1.5880 8.8951 6.2417 31 1 1.6638 -0.2166 -2.1399 32 1 3.1299 -0.7093 -1.2575 33 1 0.4549 -2.1823 -1.2669 34 1 1.9410 -2.6991 -2.1016 35 1 1.6415 -3.8721 0.0836 36 1 3.1167 -2.8756 0.0595 37 1 0.4274 -2.0606 1.2534 38 1 1.8712 -2.5462 2.1739 39 1 3.0272 -0.6714 1.2426 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706014455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:41 Heat of formation + Delta-G solvation = -76.085593 kcal Electronic energy + Delta-G solvation = -18862.445178 eV Core-core repulsion = 15929.313088 eV Total energy + Delta-G solvation = -2933.132090 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.13948 -40.00961 -35.89966 -34.66339 -33.13538 -32.62924 -30.85178 -28.62218 -27.88212 -26.78815 -24.22462 -22.31870 -21.60129 -20.08842 -19.77532 -17.93854 -17.45039 -17.07714 -16.78117 -16.22809 -16.00470 -15.90260 -15.57084 -15.08684 -14.91787 -14.60597 -14.31871 -13.87128 -13.66184 -13.34025 -13.25839 -13.00222 -12.86694 -12.79835 -12.66332 -12.56174 -12.17965 -11.96773 -11.85029 -11.37746 -11.20114 -11.16158 -10.95838 -10.52345 -10.04745 -9.26283 -8.98161 -8.50706 -6.21274 1.00782 1.32204 1.48111 1.57812 1.62087 2.25244 2.31660 2.73951 2.87449 3.20955 3.60437 3.84134 3.92153 3.98152 4.08190 4.23044 4.26305 4.29271 4.49737 4.50283 4.64309 4.69950 4.74654 4.77859 4.94300 5.01083 5.06098 5.09007 5.15597 5.22143 5.29047 5.47547 5.49579 5.71803 6.12413 6.12834 6.45027 6.56894 6.94465 7.26218 8.61905 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.047561 B = 0.003390 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.570373 B = 8257.576256 C = 8554.383914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.112 3.888 3 C 0.134 3.866 4 N -0.697 5.697 5 C 0.533 3.467 6 O -0.568 6.568 7 C -0.110 4.110 8 S -0.175 6.175 9 C -0.529 4.529 10 H 0.061 0.939 11 C 0.045 3.955 12 N -0.918 5.918 13 Si 0.915 3.085 14 H -0.262 1.262 15 H -0.259 1.259 16 H -0.237 1.237 17 C -0.142 4.142 18 C -0.117 4.117 19 C -0.154 4.154 20 C 0.055 3.945 21 N -0.683 5.683 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.417 0.583 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.277 0.723 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.006 -24.406 -13.816 28.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.020 3.980 3 C 0.010 3.990 4 N -0.350 5.350 5 C 0.318 3.682 6 O -0.448 6.448 7 C -0.261 4.261 8 S 0.052 5.948 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.160 4.160 12 N -0.556 5.556 13 Si 0.737 3.263 14 H -0.186 1.186 15 H -0.183 1.183 16 H -0.161 1.161 17 C -0.182 4.182 18 C -0.154 4.154 19 C -0.193 4.193 20 C -0.074 4.074 21 N -0.313 5.313 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.255 0.745 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.496 -23.035 -14.636 27.296 hybrid contribution -0.115 -0.480 0.687 0.846 sum -0.611 -23.516 -13.949 27.348 Atomic orbital electron populations 1.21959 0.92782 1.02976 1.02341 1.21027 0.96310 0.90853 0.89766 1.21431 0.99481 0.92072 0.86055 1.45602 1.57430 1.10641 1.21371 1.19937 0.78718 0.82441 0.87101 1.90676 1.41272 1.65358 1.47459 1.23254 1.05760 0.97790 0.99285 1.84666 1.74756 1.10643 1.24758 1.22477 1.40858 1.01531 1.02804 0.92044 1.25579 0.95552 0.98909 0.95991 1.70018 1.45858 1.19641 1.20108 0.85853 0.80648 0.80006 0.79774 1.18644 1.18295 1.16062 1.22162 1.00969 0.96864 0.98205 1.21562 1.01409 0.94391 0.98055 1.22221 1.00961 1.00329 0.95828 1.22099 1.00986 0.86770 0.97522 1.60598 1.15713 1.16593 1.38425 0.90689 0.91867 0.92357 0.92557 0.91712 0.74464 0.87106 0.87086 0.91355 0.90884 0.91882 0.91110 0.91457 0.90602 0.92287 0.90285 0.90217 0.83790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 7.74 71.98 0.56 -1.40 16 2 C 0.11 1.62 0.60 3.55 0.00 1.63 16 3 C 0.13 2.85 4.71 86.38 0.41 3.25 16 4 N -0.70 -17.43 5.12 -463.04 -2.37 -19.80 16 5 C 0.53 18.91 7.85 87.66 0.69 19.60 16 6 O -0.57 -24.84 15.86 -3.02 -0.05 -24.89 16 7 C -0.11 -4.28 6.16 71.24 0.44 -3.85 16 8 S -0.17 -9.01 18.55 -56.49 -1.05 -10.06 16 9 C -0.53 -31.31 10.04 67.96 0.68 -30.63 16 10 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 11 C 0.04 2.67 5.50 84.86 0.47 3.14 16 12 N -0.92 -56.56 13.97 21.65 0.30 -56.26 16 13 Si 0.92 45.54 27.74 68.60 1.90 47.44 16 14 H -0.26 -12.68 7.11 99.48 0.71 -11.98 16 15 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 16 H -0.24 -11.77 6.74 99.48 0.67 -11.10 16 17 C -0.14 -1.75 4.88 30.65 0.15 -1.60 16 18 C -0.12 -1.15 5.70 30.68 0.17 -0.97 16 19 C -0.15 -1.43 6.08 30.65 0.19 -1.25 16 20 C 0.06 0.60 6.26 86.33 0.54 1.14 16 21 N -0.68 -9.48 5.75 -470.27 -2.70 -12.18 16 22 H 0.07 0.84 4.80 -2.39 -0.01 0.83 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.90 7.18 -2.38 -0.02 0.88 16 25 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.42 8.78 7.32 -92.71 -0.68 8.10 16 28 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 29 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 30 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.67 6.56 -2.39 -0.02 0.65 16 34 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.85 6.19 -2.39 -0.01 0.83 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.34 4.90 8.79 -89.69 -0.79 4.11 16 Total: -1.00 -70.99 320.17 -0.12 -71.11 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -0.45 Total: 15.57 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 4.29 Total: -10.94 kcal Atomic # 7 Polarization: -83.47 SS G_CDS: -4.77 Total: -88.23 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.05 Total: -24.89 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -70.99 -0.12 -71.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706014455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.976 kcal (2) G-P(sol) polarization free energy of solvation -70.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds