Wall clock time and date at job start Mon Mar 30 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99553 * 2 1 4 4 C 1.52994 * 109.46799 * 90.00326 * 3 2 1 5 5 C 1.53124 * 109.52564 * 294.68153 * 4 3 2 6 6 C 1.53035 * 109.27794 * 182.44326 * 5 4 3 7 7 N 1.46844 * 109.52494 * 59.18054 * 6 5 4 8 8 C 1.46854 * 111.19703 * 298.25280 * 7 6 5 9 9 C 1.53037 * 109.51886 * 61.74789 * 8 7 6 10 10 C 1.34769 * 120.00434 * 180.02562 * 2 1 3 11 11 O 1.21280 * 120.00347 * 179.97438 * 10 2 1 12 12 C 1.50706 * 120.00057 * 359.97438 * 10 2 1 13 13 S 1.81002 * 109.47168 * 180.02562 * 12 10 2 14 14 C 1.76204 * 99.99842 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 12 16 16 C 1.38796 * 120.00121 * 179.97438 * 14 13 12 17 17 N 1.31639 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47014 * 90.00039 * 18 16 14 20 20 H 1.48498 * 109.47176 * 210.00317 * 18 16 14 21 21 H 1.48504 * 109.46745 * 329.99805 * 18 16 14 22 22 H 1.08996 * 109.47677 * 90.00238 * 1 2 3 23 23 H 1.09006 * 109.46324 * 209.99669 * 1 2 3 24 24 H 1.09001 * 109.47370 * 329.99327 * 1 2 3 25 25 H 1.08998 * 109.47060 * 330.00162 * 3 2 1 26 26 H 1.08999 * 109.46956 * 210.00105 * 3 2 1 27 27 H 1.08999 * 109.58045 * 54.84230 * 4 3 2 28 28 H 1.08999 * 109.50059 * 302.38272 * 5 4 3 29 29 H 1.08993 * 109.49981 * 62.49919 * 5 4 3 30 30 H 1.09002 * 109.46466 * 299.16376 * 6 5 4 31 31 H 1.09002 * 109.46192 * 179.19659 * 6 5 4 32 32 H 1.00899 * 111.00532 * 62.35261 * 7 6 5 33 33 H 1.08994 * 109.46310 * 301.73015 * 8 7 6 34 34 H 1.09004 * 109.45281 * 181.75170 * 8 7 6 35 35 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 36 36 H 1.08992 * 109.50737 * 60.75564 * 9 8 7 37 37 H 1.09000 * 109.46674 * 299.99954 * 12 10 2 38 38 H 1.08996 * 109.47148 * 59.99866 * 12 10 2 39 39 H 0.96999 * 119.99772 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 6 1.1180 2.0216 2.1259 6 6 1.3830 2.5208 3.5481 7 7 2.2201 3.7262 3.4971 8 6 3.5254 3.4408 2.8877 9 6 3.3243 2.9692 1.4457 10 6 2.1390 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 16 2.5618 -3.8480 -0.0005 14 6 1.4418 -5.2082 0.0003 15 1 0.3765 -5.0306 0.0010 16 6 1.9286 -6.5080 -0.0001 17 7 3.2270 -6.7245 -0.0004 18 14 0.7412 -7.9501 0.0000 19 1 0.4262 -8.3320 -1.4000 20 1 1.3628 -9.1030 0.6998 21 1 -0.5092 -7.5615 0.7005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6083 2.0284 -0.5138 26 1 3.1498 1.1385 -0.5138 27 1 2.9617 0.9132 1.9839 28 1 0.5913 2.7916 1.5622 29 1 0.5097 1.1180 2.1648 30 1 1.8975 1.7451 4.1153 31 1 0.4356 2.7568 4.0326 32 1 1.7490 4.4733 3.0094 33 1 4.0297 2.6608 3.4580 34 1 4.1338 4.3453 2.8924 35 1 4.2922 2.7425 0.9987 36 1 2.8323 3.7540 0.8714 37 1 0.7593 -2.5302 0.8897 38 1 0.7585 -2.5299 -0.8902 39 1 3.5672 -7.6329 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706055018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:31 Heat of formation + Delta-G solvation = -46.194309 kcal Electronic energy + Delta-G solvation = -19013.416094 eV Core-core repulsion = 16081.580187 eV Total energy + Delta-G solvation = -2931.835907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.95042 -38.57617 -35.46750 -32.68282 -32.43264 -31.04512 -29.41017 -27.45460 -25.65331 -25.22727 -23.10574 -22.43985 -20.43062 -19.12114 -17.65533 -16.56449 -16.43077 -15.85181 -15.44125 -14.87991 -14.80965 -14.51014 -14.30507 -14.00589 -13.30842 -13.20209 -13.06466 -12.78278 -12.56130 -12.25922 -12.19049 -12.03084 -11.60628 -11.44828 -11.43582 -11.06802 -11.02790 -10.78081 -10.70249 -10.45731 -9.81083 -9.35372 -9.07074 -8.77032 -8.37000 -8.23091 -6.50657 -6.22085 -3.92780 2.95067 3.05846 3.21784 3.25865 3.29975 3.61120 4.07796 4.19901 4.47570 4.63390 4.76489 4.88781 4.90226 5.09835 5.13032 5.16503 5.17679 5.26799 5.35789 5.40996 5.55219 5.59488 5.62385 5.69411 5.72592 5.76655 5.83790 5.87640 5.91432 6.00510 6.12494 6.20590 6.67044 6.77784 7.13292 7.53617 7.59062 8.34599 8.56641 9.23130 10.85352 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.003655 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.975854 B = 7658.655766 C = 7751.269346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.623 5.623 3 C 0.124 3.876 4 C -0.104 4.104 5 C -0.152 4.152 6 C 0.056 3.944 7 N -0.687 5.687 8 C 0.057 3.943 9 C -0.149 4.149 10 C 0.532 3.468 11 O -0.516 6.516 12 C -0.150 4.150 13 S -0.062 6.062 14 C -0.535 4.535 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.272 1.272 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.337 0.663 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 20.323 2.846 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.359 5.359 3 C 0.001 3.999 4 C -0.124 4.124 5 C -0.192 4.192 6 C -0.074 4.074 7 N -0.315 5.315 8 C -0.073 4.073 9 C -0.189 4.189 10 C 0.320 3.680 11 O -0.390 6.390 12 C -0.300 4.300 13 S 0.164 5.836 14 C -0.683 4.683 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.197 1.197 22 H 0.071 0.929 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.154 0.846 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.240 20.111 3.507 20.850 hybrid contribution -2.552 -1.081 -1.052 2.965 sum -6.792 19.030 2.455 20.354 Atomic orbital electron populations 1.21878 0.79939 1.03177 1.01731 1.47832 1.06677 1.05677 1.75666 1.21409 0.97842 0.84672 0.95967 1.21593 0.96018 0.97810 0.96941 1.22402 0.97569 1.01685 0.97503 1.22032 0.97373 0.92530 0.95472 1.60663 1.04866 1.08698 1.57283 1.22018 0.91532 1.01219 0.92522 1.22232 1.00657 0.97314 0.98711 1.20346 0.87952 0.84599 0.75118 1.90690 1.13734 1.86814 1.47736 1.23554 1.04532 0.97332 1.04618 1.85396 1.08102 0.93360 1.96697 1.22858 0.94292 0.92225 1.58963 0.90975 1.24993 0.95674 0.98371 0.94531 1.70023 1.11739 1.21659 1.46853 0.86168 0.80266 0.80720 0.78351 1.20268 1.20736 1.19690 0.92851 0.90696 0.91143 0.91223 0.89859 0.90287 0.92255 0.90896 0.90829 0.90861 0.84551 0.90765 0.90765 0.91002 0.92077 0.89351 0.89359 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.79 9.35 59.85 0.56 1.35 16 2 N -0.62 -8.69 2.71 -181.57 -0.49 -9.19 16 3 C 0.12 1.48 4.90 -4.04 -0.02 1.46 16 4 C -0.10 -1.13 2.46 -90.49 -0.22 -1.35 16 5 C -0.15 -1.38 4.25 -26.65 -0.11 -1.49 16 6 C 0.06 0.50 6.55 -3.84 -0.03 0.47 16 7 N -0.69 -6.01 6.87 -113.81 -0.78 -6.79 16 8 C 0.06 0.50 6.55 -3.83 -0.03 0.48 16 9 C -0.15 -1.35 5.36 -26.65 -0.14 -1.49 16 10 C 0.53 10.16 7.69 -10.99 -0.08 10.07 16 11 O -0.52 -11.82 15.44 5.56 0.09 -11.73 16 12 C -0.15 -3.07 4.71 36.01 0.17 -2.90 16 13 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 14 C -0.54 -15.29 9.50 30.94 0.29 -15.00 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 17 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 18 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 24 H 0.07 0.56 6.02 -51.93 -0.31 0.25 16 25 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 26 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.71 6.12 -51.93 -0.32 0.39 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.34 2.46 8.86 -39.29 -0.35 2.11 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 1.68 7.40 -51.92 -0.38 1.29 16 38 H 0.09 1.69 8.11 -51.92 -0.42 1.27 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -33.55 324.33 -8.78 -42.33 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.27 Total: -0.09 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 0.29 Total: -6.39 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: -0.54 Total: -41.48 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.55 -8.78 -42.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706055018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.867 kcal (2) G-P(sol) polarization free energy of solvation -33.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds