Wall clock time and date at job start Mon Mar 30 2020 05:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46506 * 119.99553 * 2 1 4 4 C 1.52994 * 109.46799 * 90.00326 * 3 2 1 5 5 C 1.53124 * 109.52564 * 294.68153 * 4 3 2 6 6 C 1.53035 * 109.27794 * 182.44326 * 5 4 3 7 7 N 1.46844 * 109.52494 * 59.18054 * 6 5 4 8 8 C 1.46854 * 111.19703 * 298.25280 * 7 6 5 9 9 C 1.53037 * 109.51886 * 61.74789 * 8 7 6 10 10 C 1.34769 * 120.00434 * 180.02562 * 2 1 3 11 11 O 1.21280 * 120.00347 * 179.97438 * 10 2 1 12 12 C 1.50706 * 120.00057 * 359.97438 * 10 2 1 13 13 S 1.81002 * 109.47168 * 180.02562 * 12 10 2 14 14 C 1.76204 * 99.99842 * 179.97438 * 13 12 10 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 12 16 16 C 1.38796 * 120.00121 * 179.97438 * 14 13 12 17 17 N 1.31639 * 119.99752 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00271 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47014 * 90.00039 * 18 16 14 20 20 H 1.48498 * 109.47176 * 210.00317 * 18 16 14 21 21 H 1.48504 * 109.46745 * 329.99805 * 18 16 14 22 22 H 1.08996 * 109.47677 * 90.00238 * 1 2 3 23 23 H 1.09006 * 109.46324 * 209.99669 * 1 2 3 24 24 H 1.09001 * 109.47370 * 329.99327 * 1 2 3 25 25 H 1.08998 * 109.47060 * 330.00162 * 3 2 1 26 26 H 1.08999 * 109.46956 * 210.00105 * 3 2 1 27 27 H 1.08999 * 109.58045 * 54.84230 * 4 3 2 28 28 H 1.08999 * 109.50059 * 302.38272 * 5 4 3 29 29 H 1.08993 * 109.49981 * 62.49919 * 5 4 3 30 30 H 1.09002 * 109.46466 * 299.16376 * 6 5 4 31 31 H 1.09002 * 109.46192 * 179.19659 * 6 5 4 32 32 H 1.00899 * 111.00532 * 62.35261 * 7 6 5 33 33 H 1.08994 * 109.46310 * 301.73015 * 8 7 6 34 34 H 1.09004 * 109.45281 * 181.75170 * 8 7 6 35 35 H 1.09000 * 109.50480 * 180.88135 * 9 8 7 36 36 H 1.08992 * 109.50737 * 60.75564 * 9 8 7 37 37 H 1.09000 * 109.46674 * 299.99954 * 12 10 2 38 38 H 1.08996 * 109.47148 * 59.99866 * 12 10 2 39 39 H 0.96999 * 119.99772 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7104 1.4425 5 6 1.1180 2.0216 2.1259 6 6 1.3830 2.5208 3.5481 7 7 2.2201 3.7262 3.4971 8 6 3.5254 3.4408 2.8877 9 6 3.3243 2.9692 1.4457 10 6 2.1390 -1.1671 -0.0005 11 8 3.3517 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 16 2.5618 -3.8480 -0.0005 14 6 1.4418 -5.2082 0.0003 15 1 0.3765 -5.0306 0.0010 16 6 1.9286 -6.5080 -0.0001 17 7 3.2270 -6.7245 -0.0004 18 14 0.7412 -7.9501 0.0000 19 1 0.4262 -8.3320 -1.4000 20 1 1.3628 -9.1030 0.6998 21 1 -0.5092 -7.5615 0.7005 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3632 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.6083 2.0284 -0.5138 26 1 3.1498 1.1385 -0.5138 27 1 2.9617 0.9132 1.9839 28 1 0.5913 2.7916 1.5622 29 1 0.5097 1.1180 2.1648 30 1 1.8975 1.7451 4.1153 31 1 0.4356 2.7568 4.0326 32 1 1.7490 4.4733 3.0094 33 1 4.0297 2.6608 3.4580 34 1 4.1338 4.3453 2.8924 35 1 4.2922 2.7425 0.9987 36 1 2.8323 3.7540 0.8714 37 1 0.7593 -2.5302 0.8897 38 1 0.7585 -2.5299 -0.8902 39 1 3.5672 -7.6329 -0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706055018.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:31 Heat of formation + Delta-G solvation = -70.160259 kcal Electronic energy + Delta-G solvation = -19014.455335 eV Core-core repulsion = 16081.580187 eV Total energy + Delta-G solvation = -2932.875148 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.13614 -39.59598 -36.69776 -34.60000 -33.64854 -31.78766 -30.85371 -28.43738 -27.71012 -26.41212 -23.84099 -23.35346 -21.25157 -20.58353 -19.52221 -17.98322 -17.42330 -17.07213 -16.89131 -16.53805 -15.88900 -15.59803 -15.43325 -15.26313 -14.57069 -14.50750 -14.18728 -13.98548 -13.63174 -13.56299 -13.20205 -13.10152 -12.93298 -12.90378 -12.67264 -12.53534 -12.30896 -12.16665 -11.73807 -11.53925 -11.26716 -11.15547 -10.86304 -10.28979 -9.78832 -9.22804 -8.69740 -8.36025 -6.15019 1.24746 1.41800 1.45268 1.55787 1.56411 2.12875 2.26367 2.98107 3.24801 3.39787 3.61666 3.78483 3.83553 3.95235 4.15300 4.20035 4.28795 4.31839 4.43329 4.45085 4.47352 4.55807 4.62729 4.75974 4.82979 4.91624 4.95564 4.98050 5.08221 5.12349 5.18981 5.34876 5.39865 5.59970 6.06234 6.18077 6.26283 6.55720 7.04949 7.13944 8.73338 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034349 B = 0.003655 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.975854 B = 7658.655766 C = 7751.269346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.608 5.608 3 C 0.122 3.878 4 C -0.100 4.100 5 C -0.144 4.144 6 C 0.057 3.943 7 N -0.690 5.690 8 C 0.059 3.941 9 C -0.143 4.143 10 C 0.528 3.472 11 O -0.567 6.567 12 C -0.122 4.122 13 S -0.156 6.156 14 C -0.546 4.546 15 H 0.083 0.917 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.267 1.267 20 H -0.278 1.278 21 H -0.257 1.257 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.090 0.910 32 H 0.351 0.649 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.589 21.999 2.644 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.341 5.341 3 C 0.000 4.000 4 C -0.119 4.119 5 C -0.183 4.183 6 C -0.073 4.073 7 N -0.319 5.319 8 C -0.071 4.071 9 C -0.182 4.182 10 C 0.315 3.685 11 O -0.445 6.445 12 C -0.274 4.274 13 S 0.072 5.928 14 C -0.694 4.694 15 H 0.101 0.899 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.181 1.181 22 H 0.090 0.910 23 H 0.091 0.909 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.169 0.831 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.464 21.845 3.305 23.320 hybrid contribution -1.589 -1.445 -0.978 2.360 sum -9.053 20.400 2.327 22.439 Atomic orbital electron populations 1.22213 0.77090 1.04801 1.03410 1.47825 1.08394 1.04688 1.73179 1.21609 0.97295 0.84296 0.96812 1.21499 0.97314 0.97331 0.95803 1.22351 0.96181 1.02243 0.97542 1.21997 0.97802 0.92117 0.95361 1.60622 1.04757 1.08915 1.57623 1.21974 0.91910 1.01204 0.91985 1.22186 0.99993 0.96922 0.99133 1.20166 0.87296 0.85626 0.75382 1.90672 1.15758 1.87533 1.50584 1.23367 1.02665 0.95119 1.06205 1.85599 1.12799 0.97408 1.97031 1.23191 0.94588 0.92612 1.58983 0.89904 1.26153 0.97628 1.01718 0.93658 1.70194 1.14168 1.22497 1.47965 0.84934 0.77861 0.76220 0.78842 1.19235 1.20291 1.18083 0.91044 0.90875 0.87872 0.87269 0.92442 0.94696 0.89560 0.91393 0.93200 0.89195 0.83056 0.92975 0.89193 0.92128 0.89632 0.87608 0.87568 0.91979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.14 9.35 127.77 1.19 2.34 16 2 N -0.61 -16.04 2.71 -846.75 -2.29 -18.34 16 3 C 0.12 2.73 4.90 86.38 0.42 3.15 16 4 C -0.10 -2.09 2.46 -10.71 -0.03 -2.11 16 5 C -0.14 -2.22 4.25 30.65 0.13 -2.09 16 6 C 0.06 0.92 6.55 86.33 0.57 1.49 16 7 N -0.69 -10.61 6.87 -514.00 -3.53 -14.14 16 8 C 0.06 0.98 6.55 86.32 0.57 1.55 16 9 C -0.14 -2.38 5.36 30.65 0.16 -2.22 16 10 C 0.53 20.36 7.69 87.66 0.67 21.04 16 11 O -0.57 -27.29 15.44 -3.03 -0.05 -27.33 16 12 C -0.12 -5.01 4.71 71.24 0.34 -4.67 16 13 S -0.16 -8.82 20.57 -56.49 -1.16 -9.99 16 14 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 15 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 16 C 0.01 0.75 5.49 84.86 0.47 1.22 16 17 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 18 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 22 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.07 1.33 6.44 -2.38 -0.02 1.31 16 24 H 0.10 1.15 6.02 -2.39 -0.01 1.14 16 25 H 0.11 1.63 8.07 -2.39 -0.02 1.61 16 26 H 0.06 1.61 7.42 -2.39 -0.02 1.60 16 27 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.13 6.12 -2.39 -0.01 1.12 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.35 3.91 8.86 -89.69 -0.79 3.11 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.11 3.93 7.40 -2.40 -0.02 3.91 16 38 H 0.11 3.93 8.11 -2.40 -0.02 3.92 16 39 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -77.04 324.33 0.66 -76.39 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.24 Total: 15.08 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.14 Total: -11.15 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -5.54 Total: -88.74 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.05 Total: -27.33 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -8.82 SS G_CDS: -1.16 Total: -9.99 kcal Total: -77.04 0.66 -76.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706055018.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.225 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds