Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44730 * 2 1 4 4 C 1.53036 * 109.46209 * 240.02976 * 2 1 3 5 5 C 1.53187 * 109.33909 * 178.63045 * 4 2 1 6 6 N 1.46928 * 108.77623 * 54.61900 * 5 4 2 7 7 C 1.34777 * 120.63052 * 126.36901 * 6 5 4 8 8 O 1.21288 * 119.99622 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00134 * 0.02562 * 7 6 5 10 10 S 1.80995 * 109.47091 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00055 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99964 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00377 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99739 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00438 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47095 * 89.99619 * 15 13 11 17 17 H 1.48500 * 109.47606 * 210.00136 * 15 13 11 18 18 H 1.48506 * 109.46876 * 330.00371 * 15 13 11 19 19 C 1.46927 * 118.73615 * 306.39196 * 6 5 4 20 20 C 1.53042 * 109.48686 * 119.94081 * 2 1 3 21 21 H 1.09000 * 109.49338 * 61.38649 * 20 2 1 22 22 C 1.53003 * 109.49673 * 301.32771 * 20 2 1 23 23 N 1.46903 * 109.46720 * 175.12784 * 22 20 2 24 24 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47188 * 299.97083 * 1 2 3 26 26 H 1.08996 * 109.47348 * 59.96896 * 1 2 3 27 27 H 1.09002 * 109.49886 * 58.66167 * 4 2 1 28 28 H 1.09000 * 109.49395 * 298.59644 * 4 2 1 29 29 H 1.09000 * 109.58836 * 174.40473 * 5 4 2 30 30 H 1.08999 * 109.58980 * 294.83076 * 5 4 2 31 31 H 1.08999 * 109.46873 * 299.99877 * 9 7 6 32 32 H 1.08996 * 109.46994 * 60.00017 * 9 7 6 33 33 H 0.96994 * 120.00161 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.58621 * 173.39948 * 19 6 5 35 35 H 1.09003 * 109.58297 * 293.67513 * 19 6 5 36 36 H 1.08999 * 109.47019 * 295.12339 * 22 20 2 37 37 H 1.08996 * 109.47374 * 55.12533 * 22 20 2 38 38 H 1.00900 * 111.00279 * 56.04371 * 23 22 20 39 39 H 1.00900 * 110.99566 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6893 -1.2645 6 7 4.0679 -1.2494 -0.0002 7 6 4.9610 -2.2588 -0.0001 8 8 5.3636 -2.7122 1.0503 9 6 5.4603 -2.8233 -1.3052 10 16 6.6389 -4.1564 -0.9743 11 6 7.0490 -4.6188 -2.6244 12 1 6.5943 -4.1045 -3.4581 13 6 7.9556 -5.6447 -2.8528 14 7 8.5094 -6.2719 -1.8366 15 14 8.3898 -6.1354 -4.6020 16 1 9.5540 -5.3383 -5.0652 17 1 8.7321 -7.5799 -4.6406 18 1 7.2285 -5.8779 -5.4911 19 6 3.5719 -0.6886 1.2640 20 6 2.0405 -0.7201 1.2502 21 1 1.6980 -1.7548 1.2394 22 6 1.5039 -0.0176 2.4990 23 7 1.8972 -0.7757 3.6943 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5143 -0.8897 27 1 1.6572 -0.2209 -2.1398 28 1 1.6974 -1.7555 -1.2383 29 1 3.9412 -1.2856 -2.0986 30 1 3.9147 0.3400 -1.3680 31 1 4.6192 -3.2159 -1.8766 32 1 5.9523 -2.0364 -1.8768 33 1 9.1427 -6.9890 -1.9961 34 1 3.9422 -1.2844 2.0983 35 1 3.9175 0.3400 1.3679 36 1 1.9172 0.9894 2.5553 37 1 0.4167 0.0383 2.4456 38 1 2.8982 -0.8970 3.7325 39 1 1.5548 -0.3315 4.5331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706056046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = -50.426631 kcal Electronic energy + Delta-G solvation = -19131.529977 eV Core-core repulsion = 16199.510543 eV Total energy + Delta-G solvation = -2932.019434 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15701 -37.93761 -35.12402 -33.59954 -32.41538 -30.92671 -29.45286 -27.84281 -25.55628 -25.10906 -23.36667 -21.84811 -20.28199 -19.09809 -17.66275 -16.74660 -16.12834 -15.66659 -15.29145 -15.04188 -14.79156 -14.46007 -14.10617 -13.88240 -13.67300 -13.36914 -13.33851 -12.84599 -12.58462 -12.13882 -12.12417 -11.79570 -11.73024 -11.29748 -11.05637 -11.00689 -10.97786 -10.74631 -10.53628 -10.46613 -9.78609 -9.31191 -9.05366 -8.89580 -8.47117 -8.20433 -6.48352 -6.20207 -3.90667 2.95886 3.08880 3.23145 3.27115 3.31304 3.62013 4.21489 4.23303 4.50547 4.55364 4.65240 4.81988 4.98899 5.07906 5.14856 5.18964 5.24934 5.26743 5.37479 5.44886 5.49760 5.58448 5.66586 5.70355 5.73378 5.77927 5.89739 5.95971 6.01918 6.04114 6.13511 6.28547 6.67392 6.92727 7.21125 7.59446 7.61388 8.36438 8.59844 9.24967 10.87258 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032757 B = 0.003998 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.569511 B = 7001.359487 C = 7631.536434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.085 4.085 3 H 0.070 0.930 4 C -0.130 4.130 5 C 0.107 3.893 6 N -0.618 5.618 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.150 4.150 10 S -0.061 6.061 11 C -0.535 4.535 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.117 3.883 20 C -0.098 4.098 21 H 0.085 0.915 22 C 0.068 3.932 23 N -0.852 5.852 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.344 0.656 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.505 15.823 3.361 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.169 4.169 5 C -0.016 4.016 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.391 6.391 9 C -0.300 4.300 10 S 0.166 5.834 11 C -0.683 4.683 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 C -0.006 4.006 20 C -0.117 4.117 21 H 0.103 0.897 22 C -0.064 4.064 23 N -0.383 5.383 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.095 0.905 38 H 0.158 0.842 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.198 14.400 4.666 21.450 hybrid contribution 0.297 1.148 -2.154 2.459 sum -14.901 15.548 2.512 21.682 Atomic orbital electron populations 1.21890 0.95006 1.02123 1.01531 1.21101 0.95732 0.99287 0.94332 0.91196 1.21990 0.95317 1.01716 0.97830 1.21725 0.93972 0.99250 0.86690 1.48057 1.44499 1.36373 1.06511 1.20340 0.77791 0.78269 0.91349 1.90688 1.56452 1.58651 1.33319 1.23547 1.04635 1.04650 0.97213 1.85406 1.49844 1.36839 1.11345 1.22863 1.30631 1.22742 0.92113 0.90972 1.24986 0.95098 0.95218 0.98241 1.70018 1.27618 1.22260 1.30381 0.86174 0.78797 0.77837 0.82728 1.20281 1.20748 1.19692 1.21540 0.92887 0.98381 0.87833 1.21606 0.95176 1.01259 0.93687 0.89657 1.21859 1.00626 0.94045 0.89838 1.58724 1.19408 1.55533 1.04629 0.92452 0.92472 0.92690 0.90651 0.91135 0.89165 0.91646 0.89299 0.89340 0.92192 0.88809 0.92439 0.95644 0.90454 0.84241 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.82 37.16 0.33 -0.76 16 2 C -0.09 -0.73 2.23 -90.58 -0.20 -0.93 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.21 5.36 -26.62 -0.14 -1.35 16 5 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 6 N -0.62 -9.04 2.97 -172.78 -0.51 -9.55 16 7 C 0.53 10.45 7.72 -10.99 -0.08 10.37 16 8 O -0.52 -12.06 15.28 5.55 0.08 -11.98 16 9 C -0.15 -3.11 4.50 36.01 0.16 -2.94 16 10 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 11 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 12 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 13 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 14 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 C 0.12 1.46 5.35 -3.72 -0.02 1.44 16 20 C -0.10 -1.01 2.09 -90.50 -0.19 -1.19 16 21 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 22 C 0.07 0.58 6.00 -3.82 -0.02 0.56 16 23 N -0.85 -7.93 9.62 -10.37 -0.10 -8.03 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.38 6.30 -51.93 -0.33 0.05 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 32 H 0.09 1.69 7.94 -51.92 -0.41 1.28 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 34 H 0.09 1.37 5.81 -51.93 -0.30 1.06 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.08 0.62 6.15 -51.93 -0.32 0.30 16 38 H 0.34 3.33 7.38 -39.29 -0.29 3.04 16 39 H 0.34 2.44 9.08 -39.29 -0.36 2.08 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -33.90 321.61 -8.24 -42.14 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -6.06 Total: 2.28 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: 0.00 Total: -6.67 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.12 Total: -43.18 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: 0.08 Total: -11.98 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.90 -8.24 -42.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.284 kcal (2) G-P(sol) polarization free energy of solvation -33.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds