Wall clock time and date at job start Mon Mar 30 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.44730 * 2 1 4 4 C 1.53036 * 109.46209 * 240.02976 * 2 1 3 5 5 C 1.53187 * 109.33909 * 178.63045 * 4 2 1 6 6 N 1.46928 * 108.77623 * 54.61900 * 5 4 2 7 7 C 1.34777 * 120.63052 * 126.36901 * 6 5 4 8 8 O 1.21288 * 119.99622 * 179.97438 * 7 6 5 9 9 C 1.50699 * 120.00134 * 0.02562 * 7 6 5 10 10 S 1.80995 * 109.47091 * 180.02562 * 9 7 6 11 11 C 1.76199 * 100.00055 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99964 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00377 * 180.02562 * 11 10 9 14 14 N 1.31630 * 119.99739 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00438 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47095 * 89.99619 * 15 13 11 17 17 H 1.48500 * 109.47606 * 210.00136 * 15 13 11 18 18 H 1.48506 * 109.46876 * 330.00371 * 15 13 11 19 19 C 1.46927 * 118.73615 * 306.39196 * 6 5 4 20 20 C 1.53042 * 109.48686 * 119.94081 * 2 1 3 21 21 H 1.09000 * 109.49338 * 61.38649 * 20 2 1 22 22 C 1.53003 * 109.49673 * 301.32771 * 20 2 1 23 23 N 1.46903 * 109.46720 * 175.12784 * 22 20 2 24 24 H 1.08997 * 109.46888 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47188 * 299.97083 * 1 2 3 26 26 H 1.08996 * 109.47348 * 59.96896 * 1 2 3 27 27 H 1.09002 * 109.49886 * 58.66167 * 4 2 1 28 28 H 1.09000 * 109.49395 * 298.59644 * 4 2 1 29 29 H 1.09000 * 109.58836 * 174.40473 * 5 4 2 30 30 H 1.08999 * 109.58980 * 294.83076 * 5 4 2 31 31 H 1.08999 * 109.46873 * 299.99877 * 9 7 6 32 32 H 1.08996 * 109.46994 * 60.00017 * 9 7 6 33 33 H 0.96994 * 120.00161 * 179.97438 * 14 13 11 34 34 H 1.08999 * 109.58621 * 173.39948 * 19 6 5 35 35 H 1.09003 * 109.58297 * 293.67513 * 19 6 5 36 36 H 1.08999 * 109.47019 * 295.12339 * 22 20 2 37 37 H 1.08996 * 109.47374 * 55.12533 * 22 20 2 38 38 H 1.00900 * 111.00279 * 56.04371 * 23 22 20 39 39 H 1.00900 * 110.99566 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6893 -1.2645 6 7 4.0679 -1.2494 -0.0002 7 6 4.9610 -2.2588 -0.0001 8 8 5.3636 -2.7122 1.0503 9 6 5.4603 -2.8233 -1.3052 10 16 6.6389 -4.1564 -0.9743 11 6 7.0490 -4.6188 -2.6244 12 1 6.5943 -4.1045 -3.4581 13 6 7.9556 -5.6447 -2.8528 14 7 8.5094 -6.2719 -1.8366 15 14 8.3898 -6.1354 -4.6020 16 1 9.5540 -5.3383 -5.0652 17 1 8.7321 -7.5799 -4.6406 18 1 7.2285 -5.8779 -5.4911 19 6 3.5719 -0.6886 1.2640 20 6 2.0405 -0.7201 1.2502 21 1 1.6980 -1.7548 1.2394 22 6 1.5039 -0.0176 2.4990 23 7 1.8972 -0.7757 3.6943 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5134 0.8902 26 1 -0.3634 0.5143 -0.8897 27 1 1.6572 -0.2209 -2.1398 28 1 1.6974 -1.7555 -1.2383 29 1 3.9412 -1.2856 -2.0986 30 1 3.9147 0.3400 -1.3680 31 1 4.6192 -3.2159 -1.8766 32 1 5.9523 -2.0364 -1.8768 33 1 9.1427 -6.9890 -1.9961 34 1 3.9422 -1.2844 2.0983 35 1 3.9175 0.3400 1.3679 36 1 1.9172 0.9894 2.5553 37 1 0.4167 0.0383 2.4456 38 1 2.8982 -0.8970 3.7325 39 1 1.5548 -0.3315 4.5331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706056046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:36 Heat of formation + Delta-G solvation = -74.928489 kcal Electronic energy + Delta-G solvation = -19132.592457 eV Core-core repulsion = 16199.510543 eV Total energy + Delta-G solvation = -2933.081914 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.33205 -39.14422 -36.11561 -34.59876 -34.49865 -32.00215 -30.73328 -28.82153 -27.67382 -26.07172 -24.33329 -22.65256 -21.27352 -20.37582 -19.50593 -18.17831 -17.20722 -16.88464 -16.73156 -16.58519 -16.00908 -15.61680 -15.29026 -15.05879 -14.65291 -14.53100 -14.38715 -14.20043 -13.93207 -13.51956 -13.17244 -12.89258 -12.81443 -12.74754 -12.66170 -12.48533 -12.15299 -11.80023 -11.70567 -11.35743 -11.26426 -11.14542 -10.82452 -10.27138 -9.67307 -9.58853 -8.68526 -8.34877 -6.13813 1.24873 1.42672 1.45522 1.55337 1.56869 2.09784 2.27088 2.99270 3.24266 3.51197 3.65001 3.74307 3.82780 4.00006 4.02223 4.22782 4.24428 4.33805 4.41901 4.48577 4.54514 4.62923 4.73904 4.78353 4.83793 4.92944 5.01401 5.07426 5.14048 5.21730 5.40507 5.41040 5.53942 5.58069 6.19256 6.22918 6.28694 6.56336 7.06051 7.13001 8.74547 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032757 B = 0.003998 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.569511 B = 7001.359487 C = 7631.536434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 H 0.088 0.912 4 C -0.126 4.126 5 C 0.097 3.903 6 N -0.606 5.606 7 C 0.530 3.470 8 O -0.567 6.567 9 C -0.122 4.122 10 S -0.153 6.153 11 C -0.546 4.546 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.114 3.886 20 C -0.089 4.089 21 H 0.054 0.946 22 C 0.071 3.929 23 N -0.868 5.868 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.067 0.933 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.088 0.912 38 H 0.339 0.661 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.143 18.138 1.358 24.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.164 4.164 5 C -0.025 4.025 6 N -0.339 5.339 7 C 0.318 3.682 8 O -0.446 6.446 9 C -0.273 4.273 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.009 4.009 20 C -0.109 4.109 21 H 0.073 0.927 22 C -0.060 4.060 23 N -0.399 5.399 24 H 0.063 0.937 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.106 0.894 38 H 0.152 0.848 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.892 16.770 2.653 23.950 hybrid contribution 0.710 0.533 -1.474 1.720 sum -16.182 17.304 1.179 23.720 Atomic orbital electron populations 1.21857 0.93817 1.01741 1.02767 1.21107 0.96649 0.99639 0.92605 0.89361 1.21988 0.93609 1.01265 0.99548 1.22084 0.95465 1.00317 0.84613 1.48089 1.42507 1.34457 1.08876 1.20173 0.78702 0.79314 0.90052 1.90669 1.58719 1.60716 1.34485 1.23354 1.03107 1.02384 0.98462 1.85601 1.52983 1.40846 1.13158 1.23195 1.30994 1.23205 0.92026 0.89892 1.26143 0.94677 0.94928 1.03340 1.70187 1.28418 1.22971 1.33243 0.84938 0.79031 0.77486 0.76423 1.19210 1.20294 1.18109 1.21718 0.94527 0.98709 0.85912 1.21522 0.93221 1.00196 0.95959 0.92704 1.21861 1.01194 0.94339 0.88558 1.58737 1.19195 1.56357 1.05660 0.93663 0.91496 0.91238 0.87832 0.92905 0.89513 0.88918 0.87732 0.87408 0.91971 0.91433 0.90108 0.93946 0.89393 0.84760 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.82 71.98 0.63 -1.03 16 2 C -0.08 -1.13 2.23 -10.77 -0.02 -1.15 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.13 -1.97 5.36 30.67 0.16 -1.81 16 5 C 0.10 1.91 6.34 86.36 0.55 2.46 16 6 N -0.61 -17.14 2.97 -818.92 -2.43 -19.57 16 7 C 0.53 21.04 7.72 87.66 0.68 21.71 16 8 O -0.57 -27.72 15.28 -3.05 -0.05 -27.77 16 9 C -0.12 -5.07 4.50 71.24 0.32 -4.75 16 10 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 11 C -0.55 -31.61 9.50 67.95 0.65 -30.96 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.79 5.49 84.86 0.47 1.26 16 14 N -0.91 -56.63 13.22 21.65 0.29 -56.35 16 15 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 18 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 19 C 0.11 2.75 5.35 86.36 0.46 3.21 16 20 C -0.09 -1.71 2.09 -10.72 -0.02 -1.73 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 C 0.07 1.08 6.00 86.30 0.52 1.60 16 23 N -0.87 -15.56 9.62 -186.71 -1.80 -17.36 16 24 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.07 0.65 6.30 -2.39 -0.02 0.64 16 26 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.09 1.79 5.93 -2.39 -0.01 1.77 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 32 H 0.11 4.03 7.94 -2.40 -0.02 4.01 16 33 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 34 H 0.07 2.03 5.81 -2.39 -0.01 2.02 16 35 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 1.18 6.15 -2.39 -0.01 1.16 16 38 H 0.34 6.64 7.38 -89.69 -0.66 5.98 16 39 H 0.35 4.68 9.08 -89.69 -0.81 3.86 16 Total: -1.00 -76.82 321.61 0.84 -75.97 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -0.42 Total: 20.33 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: 4.39 Total: -11.19 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -3.94 Total: -93.28 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.05 Total: -27.77 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -76.82 0.84 -75.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.044 kcal (2) G-P(sol) polarization free energy of solvation -76.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds