Wall clock time and date at job start Mon Mar 30 2020 05:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46037 * 2 1 4 4 C 1.53044 * 109.46147 * 119.97823 * 2 1 3 5 5 C 1.53194 * 109.31295 * 58.65068 * 4 2 1 6 6 N 1.46927 * 108.77376 * 54.63999 * 5 4 2 7 7 C 1.34776 * 120.63267 * 126.36829 * 6 5 4 8 8 O 1.21277 * 119.99816 * 179.97438 * 7 6 5 9 9 C 1.50696 * 119.99684 * 359.97438 * 7 6 5 10 10 S 1.80996 * 109.47030 * 179.97438 * 9 7 6 11 11 C 1.76202 * 100.00365 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00352 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47241 * 59.99309 * 15 13 11 17 17 H 1.48500 * 109.47070 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47267 * 299.99519 * 15 13 11 19 19 C 1.46933 * 118.73637 * 306.38514 * 6 5 4 20 20 C 1.53041 * 109.45675 * 240.04175 * 2 1 3 21 21 H 1.08996 * 109.49469 * 181.39293 * 20 2 1 22 22 C 1.53001 * 109.49629 * 61.29562 * 20 2 1 23 23 N 1.46904 * 109.47094 * 174.99861 * 22 20 2 24 24 H 1.09001 * 109.47002 * 300.02234 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.02671 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.49799 * 178.60646 * 4 2 1 28 28 H 1.09001 * 109.49445 * 298.70046 * 4 2 1 29 29 H 1.08996 * 109.58100 * 174.42300 * 5 4 2 30 30 H 1.09002 * 109.58923 * 294.84883 * 5 4 2 31 31 H 1.08995 * 109.47633 * 299.99922 * 9 7 6 32 32 H 1.09002 * 109.47122 * 60.00139 * 9 7 6 33 33 H 0.96996 * 120.00026 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58302 * 173.39656 * 19 6 5 35 35 H 1.09000 * 109.58638 * 293.68195 * 19 6 5 36 36 H 1.09000 * 109.47125 * 295.00037 * 22 20 2 37 37 H 1.09004 * 109.47271 * 55.00040 * 22 20 2 38 38 H 1.00893 * 111.00030 * 56.04221 * 23 22 20 39 39 H 1.00900 * 110.99855 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 1.4996 -2.1544 1.2639 6 7 1.8626 -2.8089 -0.0005 7 6 2.5164 -3.9875 -0.0007 8 8 2.8100 -4.5178 -1.0511 9 6 2.8827 -4.6461 1.3042 10 16 3.7451 -6.2026 0.9733 11 6 4.0453 -6.7431 2.6233 12 1 3.7131 -6.1423 3.4571 13 6 4.7094 -7.9403 2.8514 14 7 5.1147 -8.6722 1.8352 15 14 5.0282 -8.5128 4.6007 16 1 3.7345 -8.6792 5.3106 17 1 5.7478 -9.8116 4.5730 18 1 5.8553 -7.5032 5.3091 19 6 1.4995 -2.1540 -1.2647 20 6 2.0398 -0.7206 -1.2502 21 1 3.1295 -0.7426 -1.2385 22 6 1.5568 0.0198 -2.4990 23 7 2.1438 -0.6010 -3.6940 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 3.1296 -0.7431 1.2382 28 1 1.6959 -0.1938 2.1398 29 1 1.9383 -2.7021 2.0979 30 1 0.4146 -2.1350 1.3670 31 1 3.5334 -3.9841 1.8754 32 1 1.9770 -4.8476 1.8763 33 1 5.5785 -9.5090 1.9947 34 1 1.9382 -2.7014 -2.0989 35 1 0.4146 -2.1368 -1.3689 36 1 0.4698 -0.0365 -2.5570 37 1 1.8641 1.0641 -2.4439 38 1 1.9268 -1.5855 -3.7337 39 1 1.8401 -0.1293 -4.5327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706056049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:41 Heat of formation + Delta-G solvation = -47.192499 kcal Electronic energy + Delta-G solvation = -19270.288274 eV Core-core repulsion = 16338.409082 eV Total energy + Delta-G solvation = -2931.879191 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.33556 -37.99423 -35.12991 -33.34415 -32.41281 -30.92629 -29.23120 -27.66268 -25.57778 -25.05235 -24.57396 -21.78452 -19.94610 -18.34186 -17.61779 -16.86090 -16.11210 -15.87254 -15.19799 -15.12677 -15.02290 -14.78880 -13.89031 -13.86870 -13.73730 -13.43795 -13.19031 -12.91129 -12.58413 -12.18512 -12.01924 -11.81827 -11.48057 -11.29405 -11.03103 -11.02532 -10.91834 -10.75366 -10.65490 -10.49502 -9.79268 -9.31193 -9.04453 -8.86899 -8.42476 -8.20615 -6.48153 -6.19821 -3.90430 2.96257 3.09318 3.24429 3.27100 3.30272 3.62266 4.21836 4.24021 4.51953 4.54403 4.69490 4.85220 4.99132 5.07890 5.12102 5.15112 5.22659 5.28168 5.34032 5.41224 5.51123 5.57144 5.65889 5.71837 5.74248 5.80132 5.89810 5.97442 5.99830 6.10806 6.13751 6.26195 6.67985 6.92378 7.21270 7.59761 7.61655 8.36440 8.60368 9.25177 10.87565 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.004067 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.741093 B = 6882.336035 C = 7489.226450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.131 4.131 5 C 0.106 3.894 6 N -0.617 5.617 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.150 4.150 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.072 0.928 13 C 0.074 3.926 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.274 1.274 19 C 0.116 3.884 20 C -0.098 4.098 21 H 0.084 0.916 22 C 0.070 3.930 23 N -0.853 5.853 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.269 0.731 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.344 0.656 39 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 19.403 -3.371 22.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.090 0.910 4 C -0.169 4.169 5 C -0.017 4.017 6 N -0.353 5.353 7 C 0.322 3.678 8 O -0.391 6.391 9 C -0.300 4.300 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.200 1.200 17 H -0.208 1.208 18 H -0.199 1.199 19 C -0.007 4.007 20 C -0.118 4.118 21 H 0.103 0.897 22 C -0.061 4.061 23 N -0.384 5.384 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.079 0.921 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.090 0.910 38 H 0.158 0.842 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.181 18.632 -4.676 21.291 hybrid contribution -1.145 0.143 2.161 2.450 sum -10.326 18.775 -2.515 21.574 Atomic orbital electron populations 1.22009 0.95309 1.02258 1.01611 1.21077 0.95836 0.99174 0.94310 0.90964 1.21954 1.01571 0.95502 0.97867 1.21750 1.00043 0.93291 0.86665 1.48041 1.59120 1.21693 1.06487 1.20332 0.76311 0.79778 0.91336 1.90685 1.52457 1.62662 1.33314 1.23546 1.04635 1.04635 0.97228 1.85402 1.71657 1.15033 1.11311 1.22823 1.43867 1.09615 0.92109 0.91025 1.24981 0.94815 0.95479 0.98229 1.70009 1.36515 1.13328 1.30437 0.86236 0.78541 0.77989 0.82797 1.19951 1.20808 1.19933 1.21560 0.98950 0.92371 0.87779 1.21576 1.01885 0.94586 0.93720 0.89721 1.21811 0.96026 0.98460 0.89835 1.58694 1.66974 1.08043 1.04665 0.92619 0.92630 0.92074 0.91155 0.90659 0.89278 0.91416 0.89308 0.89362 0.92137 0.88952 0.92177 0.95251 0.90985 0.84197 0.84805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 8.12 37.16 0.30 -0.84 16 2 C -0.08 -0.72 2.71 -90.57 -0.25 -0.97 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.21 5.63 -26.61 -0.15 -1.36 16 5 C 0.11 1.19 5.87 -3.71 -0.02 1.16 16 6 N -0.62 -8.97 2.97 -172.76 -0.51 -9.49 16 7 C 0.53 10.43 7.72 -10.99 -0.08 10.34 16 8 O -0.52 -12.05 15.27 5.56 0.08 -11.96 16 9 C -0.15 -3.10 4.50 36.00 0.16 -2.94 16 10 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 11 C -0.54 -15.36 9.50 30.94 0.29 -15.07 16 12 H 0.07 1.93 7.80 -52.48 -0.41 1.53 16 13 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 14 N -0.87 -26.33 13.22 55.49 0.73 -25.60 16 15 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C 0.12 1.45 4.88 -3.71 -0.02 1.43 16 20 C -0.10 -1.01 2.32 -90.50 -0.21 -1.22 16 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 22 C 0.07 0.60 5.78 -3.82 -0.02 0.58 16 23 N -0.85 -7.93 9.62 -10.37 -0.10 -8.03 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.37 6.57 -51.93 -0.34 0.03 16 26 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 30 H 0.07 0.66 6.69 -51.93 -0.35 0.31 16 31 H 0.09 1.71 7.69 -51.92 -0.40 1.31 16 32 H 0.09 1.69 7.94 -51.91 -0.41 1.28 16 33 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.09 1.35 5.82 -51.93 -0.30 1.04 16 35 H 0.06 0.66 6.70 -51.93 -0.35 0.32 16 36 H 0.03 0.22 6.73 -51.93 -0.35 -0.12 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.34 3.34 7.38 -39.30 -0.29 3.05 16 39 H 0.34 2.44 9.08 -39.29 -0.36 2.08 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -33.84 315.54 -8.16 -41.99 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.79 Total: 2.62 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -0.09 Total: -6.85 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.12 Total: -43.11 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.96 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.84 -8.16 -41.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.198 kcal (2) G-P(sol) polarization free energy of solvation -33.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds