Wall clock time and date at job start Mon Mar 30 2020 05:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46037 * 2 1 4 4 C 1.53044 * 109.46147 * 119.97823 * 2 1 3 5 5 C 1.53194 * 109.31295 * 58.65068 * 4 2 1 6 6 N 1.46927 * 108.77376 * 54.63999 * 5 4 2 7 7 C 1.34776 * 120.63267 * 126.36829 * 6 5 4 8 8 O 1.21277 * 119.99816 * 179.97438 * 7 6 5 9 9 C 1.50696 * 119.99684 * 359.97438 * 7 6 5 10 10 S 1.80996 * 109.47030 * 179.97438 * 9 7 6 11 11 C 1.76202 * 100.00365 * 180.02562 * 10 9 7 12 12 H 1.08004 * 119.99797 * 359.97438 * 11 10 9 13 13 C 1.38795 * 120.00095 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00352 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 119.99868 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.47241 * 59.99309 * 15 13 11 17 17 H 1.48500 * 109.47070 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47267 * 299.99519 * 15 13 11 19 19 C 1.46933 * 118.73637 * 306.38514 * 6 5 4 20 20 C 1.53041 * 109.45675 * 240.04175 * 2 1 3 21 21 H 1.08996 * 109.49469 * 181.39293 * 20 2 1 22 22 C 1.53001 * 109.49629 * 61.29562 * 20 2 1 23 23 N 1.46904 * 109.47094 * 174.99861 * 22 20 2 24 24 H 1.09001 * 109.47002 * 300.02234 * 1 2 3 25 25 H 1.08993 * 109.46955 * 60.02671 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.49799 * 178.60646 * 4 2 1 28 28 H 1.09001 * 109.49445 * 298.70046 * 4 2 1 29 29 H 1.08996 * 109.58100 * 174.42300 * 5 4 2 30 30 H 1.09002 * 109.58923 * 294.84883 * 5 4 2 31 31 H 1.08995 * 109.47633 * 299.99922 * 9 7 6 32 32 H 1.09002 * 109.47122 * 60.00139 * 9 7 6 33 33 H 0.96996 * 120.00026 * 180.02562 * 14 13 11 34 34 H 1.09000 * 109.58302 * 173.39656 * 19 6 5 35 35 H 1.09000 * 109.58638 * 293.68195 * 19 6 5 36 36 H 1.09000 * 109.47125 * 295.00037 * 22 20 2 37 37 H 1.09004 * 109.47271 * 55.00040 * 22 20 2 38 38 H 1.00893 * 111.00030 * 56.04221 * 23 22 20 39 39 H 1.00900 * 110.99855 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7210 1.2499 5 6 1.4996 -2.1544 1.2639 6 7 1.8626 -2.8089 -0.0005 7 6 2.5164 -3.9875 -0.0007 8 8 2.8100 -4.5178 -1.0511 9 6 2.8827 -4.6461 1.3042 10 16 3.7451 -6.2026 0.9733 11 6 4.0453 -6.7431 2.6233 12 1 3.7131 -6.1423 3.4571 13 6 4.7094 -7.9403 2.8514 14 7 5.1147 -8.6722 1.8352 15 14 5.0282 -8.5128 4.6007 16 1 3.7345 -8.6792 5.3106 17 1 5.7478 -9.8116 4.5730 18 1 5.8553 -7.5032 5.3091 19 6 1.4995 -2.1540 -1.2647 20 6 2.0398 -0.7206 -1.2502 21 1 3.1295 -0.7426 -1.2385 22 6 1.5568 0.0198 -2.4990 23 7 2.1438 -0.6010 -3.6940 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 0.5134 -0.8902 26 1 -0.3633 -1.0277 0.0005 27 1 3.1296 -0.7431 1.2382 28 1 1.6959 -0.1938 2.1398 29 1 1.9383 -2.7021 2.0979 30 1 0.4146 -2.1350 1.3670 31 1 3.5334 -3.9841 1.8754 32 1 1.9770 -4.8476 1.8763 33 1 5.5785 -9.5090 1.9947 34 1 1.9382 -2.7014 -2.0989 35 1 0.4146 -2.1368 -1.3689 36 1 0.4698 -0.0365 -2.5570 37 1 1.8641 1.0641 -2.4439 38 1 1.9268 -1.5855 -3.7337 39 1 1.8401 -0.1293 -4.5327 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706056049.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:21:40 Heat of formation + Delta-G solvation = -71.852303 kcal Electronic energy + Delta-G solvation = -19271.357603 eV Core-core repulsion = 16338.409082 eV Total energy + Delta-G solvation = -2932.948521 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.46708 -39.25083 -36.08099 -34.59216 -34.32586 -31.97690 -30.60026 -28.44804 -27.68888 -26.08205 -25.51281 -22.61386 -21.20567 -19.80207 -19.05131 -18.26181 -17.18105 -16.88085 -16.77500 -16.49337 -16.26406 -15.89788 -15.61560 -14.94549 -14.75574 -14.45002 -14.23715 -14.18920 -13.89911 -13.52018 -13.17533 -12.96966 -12.86637 -12.65638 -12.64233 -12.23879 -12.13514 -11.75355 -11.72803 -11.45720 -11.30454 -11.12991 -10.84998 -10.27406 -9.61902 -9.55308 -8.68333 -8.34495 -6.13587 1.24899 1.44159 1.45473 1.55099 1.56402 2.10034 2.27459 2.99501 3.24454 3.51943 3.65334 3.76787 3.81851 4.03543 4.04322 4.22687 4.25166 4.32805 4.41927 4.43349 4.51321 4.62686 4.69616 4.74064 4.84785 4.93589 5.03997 5.10225 5.17262 5.26826 5.36549 5.40845 5.55129 5.58096 6.19199 6.22449 6.29232 6.56381 7.06252 7.13406 8.74646 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033901 B = 0.004067 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.741093 B = 6882.336035 C = 7489.226450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.087 0.913 4 C -0.127 4.127 5 C 0.096 3.904 6 N -0.604 5.604 7 C 0.530 3.470 8 O -0.567 6.567 9 C -0.122 4.122 10 S -0.153 6.153 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.261 1.261 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.115 3.885 20 C -0.090 4.090 21 H 0.055 0.945 22 C 0.074 3.926 23 N -0.869 5.869 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.271 0.729 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.340 0.660 39 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.985 21.753 -1.366 24.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.026 4.026 6 N -0.338 5.338 7 C 0.317 3.683 8 O -0.446 6.446 9 C -0.273 4.273 10 S 0.075 5.925 11 C -0.695 4.695 12 H 0.101 0.899 13 C -0.190 4.190 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.185 1.185 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.008 4.008 20 C -0.110 4.110 21 H 0.073 0.927 22 C -0.057 4.057 23 N -0.400 5.400 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.153 0.847 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.787 21.053 -2.662 23.805 hybrid contribution -0.721 -0.456 1.481 1.709 sum -11.509 20.597 -1.181 23.624 Atomic orbital electron populations 1.21979 0.93862 1.02024 1.02928 1.21083 0.96894 0.99427 0.92552 0.89421 1.21958 1.00614 0.94329 0.99603 1.22101 1.01675 0.94188 0.84625 1.48063 1.56900 1.19987 1.08817 1.20165 0.76914 0.81131 0.90043 1.90666 1.54968 1.64470 1.34473 1.23353 1.04607 1.00872 0.98474 1.85597 1.73532 1.20282 1.13126 1.23165 1.44101 1.10209 0.92044 0.89896 1.26138 0.94165 0.95409 1.03333 1.70182 1.37452 1.13885 1.33292 0.84997 0.78958 0.77577 0.76417 1.18541 1.20373 1.18610 1.21723 1.00035 0.93167 0.85832 1.21501 1.00032 0.93473 0.96017 0.92662 1.21809 0.96880 0.98455 0.88539 1.58708 1.67610 1.08008 1.05705 0.91115 0.91645 0.92978 0.92736 0.87838 0.89624 0.88949 0.87721 0.87474 0.91968 0.91616 0.90025 0.93567 0.89909 0.84733 0.83500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.12 71.98 0.58 -1.03 16 2 C -0.08 -1.12 2.71 -10.76 -0.03 -1.15 16 3 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 4 C -0.13 -1.98 5.63 30.67 0.17 -1.81 16 5 C 0.10 1.91 5.87 86.36 0.51 2.42 16 6 N -0.60 -17.10 2.97 -818.90 -2.43 -19.54 16 7 C 0.53 21.04 7.72 87.66 0.68 21.71 16 8 O -0.57 -27.71 15.27 -3.02 -0.05 -27.76 16 9 C -0.12 -5.07 4.50 71.23 0.32 -4.75 16 10 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 11 C -0.55 -31.67 9.50 67.95 0.65 -31.02 16 12 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 13 C 0.01 0.82 5.49 84.86 0.47 1.29 16 14 N -0.91 -56.65 13.22 21.65 0.29 -56.36 16 15 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 16 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 17 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 C 0.11 2.78 4.88 86.36 0.42 3.20 16 20 C -0.09 -1.73 2.32 -10.72 -0.02 -1.76 16 21 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 22 C 0.07 1.12 5.78 86.30 0.50 1.62 16 23 N -0.87 -15.57 9.62 -186.71 -1.80 -17.37 16 24 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 25 H 0.06 0.60 6.57 -2.39 -0.02 0.58 16 26 H 0.05 0.66 4.98 -2.39 -0.01 0.65 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.09 1.78 5.93 -2.39 -0.01 1.77 16 30 H 0.09 1.47 6.69 -2.39 -0.02 1.45 16 31 H 0.10 3.98 7.69 -2.40 -0.02 3.96 16 32 H 0.11 4.02 7.94 -2.39 -0.02 4.00 16 33 H 0.27 15.66 8.31 -92.71 -0.77 14.88 16 34 H 0.07 1.98 5.82 -2.39 -0.01 1.97 16 35 H 0.08 1.65 6.70 -2.39 -0.02 1.64 16 36 H 0.05 0.56 6.73 -2.39 -0.02 0.55 16 37 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.34 6.66 7.38 -89.70 -0.66 6.00 16 39 H 0.35 4.68 9.08 -89.69 -0.81 3.86 16 Total: -1.00 -76.62 315.54 0.71 -75.91 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: -0.41 Total: 20.47 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.24 Total: -11.28 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -3.94 Total: -93.27 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.05 Total: -27.76 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -76.62 0.71 -75.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056049.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.059 kcal (2) G-P(sol) polarization free energy of solvation -76.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds