Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31626 * 120.00053 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00174 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47356 * 89.99148 * 13 11 9 15 15 H 1.48497 * 109.47342 * 209.99750 * 13 11 9 16 16 H 1.48505 * 109.46847 * 329.99403 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 H 1.08998 * 109.50680 * 185.07502 * 17 2 1 19 19 C 1.53125 * 109.50219 * 65.00129 * 17 2 1 20 20 C 1.53122 * 109.16154 * 182.40401 * 19 17 2 21 21 C 1.53036 * 109.27679 * 57.65201 * 20 19 17 22 22 N 1.46853 * 109.52602 * 300.82245 * 21 20 19 23 23 C 1.46841 * 111.19583 * 61.74281 * 22 21 20 24 24 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 25 25 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 29 29 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 30 30 H 0.97000 * 120.00636 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.52071 * 302.30587 * 19 17 2 32 32 H 1.09000 * 109.52673 * 62.43391 * 19 17 2 33 33 H 1.09000 * 109.50367 * 177.58942 * 20 19 17 34 34 H 1.09003 * 109.50353 * 297.71364 * 20 19 17 35 35 H 1.08999 * 109.46656 * 60.84038 * 21 20 19 36 36 H 1.09001 * 109.46100 * 180.81785 * 21 20 19 37 37 H 1.00900 * 110.99797 * 185.84339 * 22 21 20 38 38 H 1.09001 * 109.46233 * 178.24651 * 23 22 21 39 39 H 1.08997 * 109.46863 * 58.27897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 4.0027 -0.9252 8.4597 13 14 3.1866 1.6623 7.8944 14 1 1.7777 1.7993 8.3430 15 1 4.0965 2.1332 8.9694 16 1 3.3989 2.4797 6.6729 17 6 2.0400 -0.7213 -1.2492 18 1 3.1261 -0.8010 -1.2055 19 6 1.6353 0.0689 -2.4968 20 6 2.0969 -0.6899 -3.7441 21 6 1.4816 -2.0911 -3.7395 22 7 1.8991 -2.8065 -2.5268 23 6 1.4263 -2.1216 -1.3170 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2491 -1.6318 1.1526 28 1 1.9894 -1.5476 3.8337 29 1 3.6590 -1.1179 3.3911 30 1 4.1504 -0.5799 9.3541 31 1 0.5514 0.1829 -2.5201 32 1 2.1045 1.0525 -2.4732 33 1 1.7741 -0.1537 -4.6365 34 1 3.1840 -0.7698 -3.7399 35 1 0.3948 -2.0107 -3.7576 36 1 1.8199 -2.6392 -4.6189 37 1 1.5845 -3.7650 -2.5461 38 1 1.7244 -2.6916 -0.4371 39 1 0.3397 -2.0410 -1.3464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706056679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -53.176315 kcal Electronic energy + Delta-G solvation = -18813.508312 eV Core-core repulsion = 15881.369643 eV Total energy + Delta-G solvation = -2932.138669 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.06887 -38.61828 -35.44836 -32.62794 -32.42574 -31.64374 -29.48220 -28.33077 -25.60929 -24.49547 -24.17776 -21.65606 -20.24606 -19.36977 -17.93676 -16.98372 -16.36817 -15.82619 -15.36060 -14.99171 -14.91245 -14.82070 -14.24373 -13.98803 -13.53625 -13.36291 -13.20776 -13.04388 -12.79412 -12.66970 -12.18552 -12.03680 -11.45038 -11.26210 -11.18667 -10.99891 -10.91641 -10.77953 -10.59469 -10.49911 -9.84192 -9.46549 -9.00624 -8.94412 -8.77805 -8.48447 -6.90211 -6.27843 -3.99308 2.78832 3.00994 3.32075 3.35466 3.51624 3.67671 3.81795 4.34275 4.40912 4.50092 4.60060 4.74665 4.77965 4.89568 5.06880 5.11233 5.18094 5.18759 5.26879 5.29549 5.41247 5.49457 5.51610 5.62414 5.67892 5.75595 5.79279 5.85482 5.98643 6.02443 6.05133 6.25206 6.62506 6.65633 7.00295 7.65850 7.95306 8.42906 8.53579 9.18424 10.81470 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045755 B = 0.003418 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.808768 B = 8188.976587 C = 8531.037250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.090 0.910 4 N -0.732 5.732 5 C 0.532 3.468 6 O -0.520 6.520 7 C -0.125 4.125 8 S -0.142 6.142 9 C -0.521 4.521 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.881 5.881 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.274 1.274 16 H -0.235 1.235 17 C -0.091 4.091 18 H 0.085 0.915 19 C -0.116 4.116 20 C -0.117 4.117 21 C 0.057 3.943 22 N -0.691 5.691 23 C 0.058 3.942 24 H 0.063 0.937 25 H 0.057 0.943 26 H 0.063 0.937 27 H 0.397 0.603 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.271 0.729 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.343 0.657 38 H 0.073 0.927 39 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.130 -2.939 -24.530 25.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.387 5.387 5 C 0.318 3.682 6 O -0.395 6.395 7 C -0.275 4.275 8 S 0.084 5.916 9 C -0.669 4.669 10 H 0.106 0.894 11 C -0.113 4.113 12 N -0.518 5.518 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.159 1.159 17 C -0.111 4.111 18 H 0.104 0.896 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.072 4.072 22 N -0.322 5.322 23 C -0.071 4.071 24 H 0.082 0.918 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.936 -0.701 -24.228 24.954 hybrid contribution -0.587 -1.505 0.377 1.659 sum -6.522 -2.206 -23.850 24.824 Atomic orbital electron populations 1.22297 0.95654 1.02038 1.02561 1.20879 0.93974 0.97482 0.83340 0.89239 1.46091 1.69057 1.13922 1.09583 1.20275 0.76890 0.87213 0.83870 1.90690 1.48641 1.15755 1.84391 1.23289 1.04452 1.03435 0.96351 1.84774 1.86949 1.16559 1.03294 1.22327 1.50369 0.98728 0.95441 0.89403 1.24716 0.93369 0.98296 0.94951 1.69936 1.43387 1.35826 1.02629 0.86731 0.79276 0.85253 0.80570 1.19227 1.19957 1.15899 1.21445 1.01579 0.94219 0.93838 0.89628 1.21646 1.01296 0.98803 0.93667 1.21581 1.01587 0.94739 0.97628 1.21928 0.97176 0.95359 0.92779 1.60220 1.64526 1.05597 1.01864 1.22062 0.97393 0.94854 0.92779 0.91817 0.92398 0.91768 0.76796 0.88584 0.88483 0.91949 0.91643 0.91327 0.91524 0.91052 0.95306 0.90919 0.83895 0.90815 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.75 37.16 0.33 -1.44 16 2 C 0.15 1.67 2.35 -67.93 -0.16 1.51 16 3 H 0.09 1.19 7.57 -51.93 -0.39 0.79 16 4 N -0.73 -9.34 5.01 -53.81 -0.27 -9.61 16 5 C 0.53 9.44 7.82 -10.98 -0.09 9.35 16 6 O -0.52 -11.19 15.52 5.55 0.09 -11.10 16 7 C -0.12 -2.43 6.16 36.01 0.22 -2.20 16 8 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 9 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 10 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 11 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 12 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 13 Si 0.86 21.92 27.74 -169.99 -4.72 17.21 16 14 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 17 C -0.09 -0.81 2.28 -90.54 -0.21 -1.02 16 18 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.12 -0.90 5.09 -26.60 -0.14 -1.04 16 20 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 21 C 0.06 0.38 6.55 -3.83 -0.03 0.36 16 22 N -0.69 -5.20 6.85 -113.82 -0.78 -5.97 16 23 C 0.06 0.46 5.23 -3.84 -0.02 0.44 16 24 H 0.06 0.57 6.52 -51.93 -0.34 0.23 16 25 H 0.06 0.55 6.33 -51.92 -0.33 0.22 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.40 4.09 7.20 -40.82 -0.29 3.80 16 28 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 29 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 30 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.06 0.49 6.47 -51.92 -0.34 0.15 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.34 2.09 8.90 -39.29 -0.35 1.74 16 38 H 0.07 0.57 6.81 -51.93 -0.35 0.22 16 39 H 0.04 0.31 6.29 -51.93 -0.33 -0.02 16 LS Contribution 320.17 15.07 4.82 4.82 Total: -1.00 -33.34 320.17 -8.21 -41.55 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -6.10 Total: 1.82 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -0.03 Total: -7.11 kcal Atomic # 7 Polarization: -41.29 SS G_CDS: -0.27 Total: -41.57 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.72 Total: 17.21 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.34 -8.21 -41.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -33.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds