Wall clock time and date at job start Mon Mar 30 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.34777 * 119.99828 * 274.72131 * 4 2 1 6 6 O 1.21283 * 120.00222 * 0.28168 * 5 4 2 7 7 C 1.50703 * 120.00290 * 180.27728 * 5 4 2 8 8 S 1.81000 * 109.47389 * 180.02562 * 7 5 4 9 9 C 1.76198 * 99.99715 * 179.97438 * 8 7 5 10 10 H 1.08001 * 120.00516 * 0.02562 * 9 8 7 11 11 C 1.38803 * 119.99710 * 179.97438 * 9 8 7 12 12 N 1.31626 * 120.00053 * 180.02562 * 11 9 8 13 13 Si 1.86798 * 120.00174 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47356 * 89.99148 * 13 11 9 15 15 H 1.48497 * 109.47342 * 209.99750 * 13 11 9 16 16 H 1.48505 * 109.46847 * 329.99403 * 13 11 9 17 17 C 1.52999 * 109.47114 * 239.99813 * 2 1 3 18 18 H 1.08998 * 109.50680 * 185.07502 * 17 2 1 19 19 C 1.53125 * 109.50219 * 65.00129 * 17 2 1 20 20 C 1.53122 * 109.16154 * 182.40401 * 19 17 2 21 21 C 1.53036 * 109.27679 * 57.65201 * 20 19 17 22 22 N 1.46853 * 109.52602 * 300.82245 * 21 20 19 23 23 C 1.46841 * 111.19583 * 61.74281 * 22 21 20 24 24 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 25 25 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 27 27 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 28 28 H 1.08998 * 109.46954 * 300.00581 * 7 5 4 29 29 H 1.09002 * 109.46946 * 59.99717 * 7 5 4 30 30 H 0.97000 * 120.00636 * 180.02562 * 12 11 9 31 31 H 1.09007 * 109.52071 * 302.30587 * 19 17 2 32 32 H 1.09000 * 109.52673 * 62.43391 * 19 17 2 33 33 H 1.09000 * 109.50367 * 177.58942 * 20 19 17 34 34 H 1.09003 * 109.50353 * 297.71364 * 20 19 17 35 35 H 1.08999 * 109.46656 * 60.84038 * 21 20 19 36 36 H 1.09001 * 109.46100 * 180.81785 * 21 20 19 37 37 H 1.00900 * 110.99797 * 185.84339 * 22 21 20 38 38 H 1.09001 * 109.46233 * 178.24651 * 23 22 21 39 39 H 1.08997 * 109.46863 * 58.27897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1523 -0.0169 2.3557 6 8 1.8638 1.1599 2.4102 7 6 2.6605 -0.7257 3.5847 8 16 2.7270 0.4388 4.9688 9 6 3.3357 -0.6251 6.2346 10 1 3.5447 -1.6616 6.0147 11 6 3.5475 -0.1307 7.5142 12 7 4.0027 -0.9252 8.4597 13 14 3.1866 1.6623 7.8944 14 1 1.7777 1.7993 8.3430 15 1 4.0965 2.1332 8.9694 16 1 3.3989 2.4797 6.6729 17 6 2.0400 -0.7213 -1.2492 18 1 3.1261 -0.8010 -1.2055 19 6 1.6353 0.0689 -2.4968 20 6 2.0969 -0.6899 -3.7441 21 6 1.4816 -2.0911 -3.7395 22 7 1.8991 -2.8065 -2.5268 23 6 1.4263 -2.1216 -1.3170 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 2.2491 -1.6318 1.1526 28 1 1.9894 -1.5476 3.8337 29 1 3.6590 -1.1179 3.3911 30 1 4.1504 -0.5799 9.3541 31 1 0.5514 0.1829 -2.5201 32 1 2.1045 1.0525 -2.4732 33 1 1.7741 -0.1537 -4.6365 34 1 3.1840 -0.7698 -3.7399 35 1 0.3948 -2.0107 -3.7576 36 1 1.8199 -2.6392 -4.6189 37 1 1.5845 -3.7650 -2.5461 38 1 1.7244 -2.6916 -0.4371 39 1 0.3397 -2.0410 -1.3464 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706056679.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:36 Heat of formation + Delta-G solvation = -78.104816 kcal Electronic energy + Delta-G solvation = -18814.589293 eV Core-core repulsion = 15881.369643 eV Total energy + Delta-G solvation = -2933.219650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.13027 -39.63305 -36.45141 -34.67812 -33.55386 -32.45906 -30.65198 -29.37175 -27.85593 -25.30842 -24.79490 -22.52374 -21.45232 -20.18415 -19.81196 -18.11298 -17.57199 -17.12969 -16.79140 -16.51415 -15.99142 -15.78179 -15.41486 -15.01302 -14.86870 -14.71463 -14.31011 -13.97900 -13.91287 -13.50214 -13.37745 -13.31687 -13.01420 -12.99001 -12.63700 -12.18811 -11.94974 -11.86899 -11.60173 -11.39987 -11.22249 -11.17480 -10.92633 -10.54001 -10.13674 -9.33444 -8.99907 -8.51989 -6.22731 0.98888 1.31104 1.46718 1.55921 1.57600 2.22160 2.26529 2.71624 2.86264 3.24088 3.69522 3.81943 3.87742 3.92774 4.15677 4.22846 4.24169 4.34834 4.45104 4.46681 4.51793 4.64940 4.71124 4.82627 4.86150 4.94877 5.01243 5.03019 5.14668 5.28780 5.30558 5.48260 5.53528 5.70403 6.09663 6.11051 6.47070 6.52242 6.93214 7.20535 8.60559 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045755 B = 0.003418 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.808768 B = 8188.976587 C = 8531.037250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 H 0.068 0.932 4 N -0.708 5.708 5 C 0.536 3.464 6 O -0.562 6.562 7 C -0.112 4.112 8 S -0.175 6.175 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.045 3.955 12 N -0.918 5.918 13 Si 0.915 3.085 14 H -0.262 1.262 15 H -0.259 1.259 16 H -0.237 1.237 17 C -0.081 4.081 18 H 0.075 0.925 19 C -0.116 4.116 20 C -0.116 4.116 21 C 0.056 3.944 22 N -0.700 5.700 23 C 0.060 3.940 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.035 0.965 27 H 0.413 0.587 28 H 0.113 0.887 29 H 0.112 0.888 30 H 0.277 0.723 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.034 0.966 36 H 0.082 0.918 37 H 0.352 0.648 38 H 0.076 0.924 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.876 -3.124 -26.479 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.044 3.956 3 H 0.087 0.913 4 N -0.362 5.362 5 C 0.322 3.678 6 O -0.440 6.440 7 C -0.263 4.263 8 S 0.052 5.948 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.160 4.160 12 N -0.556 5.556 13 Si 0.737 3.263 14 H -0.187 1.187 15 H -0.183 1.183 16 H -0.161 1.161 17 C -0.101 4.101 18 H 0.093 0.907 19 C -0.154 4.154 20 C -0.154 4.154 21 C -0.073 4.073 22 N -0.332 5.332 23 C -0.070 4.070 24 H 0.101 0.899 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.250 0.750 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.052 0.948 36 H 0.100 0.900 37 H 0.171 0.829 38 H 0.094 0.906 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.679 -0.938 -26.214 27.068 hybrid contribution -0.354 -1.567 0.831 1.809 sum -7.033 -2.505 -25.383 26.458 Atomic orbital electron populations 1.22244 0.94679 1.02873 1.02134 1.21003 0.94647 0.96618 0.83330 0.91338 1.45904 1.67250 1.14505 1.08566 1.19945 0.76778 0.86588 0.84522 1.90682 1.50862 1.17409 1.85053 1.23287 1.06081 1.02289 0.94675 1.84695 1.86740 1.18430 1.04970 1.22470 1.50173 0.98197 0.96837 0.91987 1.25572 0.93225 1.02317 0.94900 1.70013 1.44473 1.37780 1.03310 0.85860 0.79563 0.80343 0.80563 1.18653 1.18307 1.16075 1.21332 1.00840 0.94946 0.92972 0.90704 1.21659 1.01719 0.98597 0.93432 1.21578 1.00993 0.95111 0.97686 1.21974 0.97460 0.95123 0.92790 1.60202 1.64837 1.06244 1.01897 1.22022 0.97545 0.94081 0.93317 0.89880 0.90882 0.94578 0.74982 0.86895 0.86958 0.91342 0.90920 0.91660 0.90125 0.92032 0.94787 0.89955 0.82872 0.90577 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.75 71.98 0.63 -2.48 16 2 C 0.15 3.13 2.35 44.99 0.11 3.24 16 3 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 4 N -0.71 -16.95 5.01 -442.53 -2.22 -19.17 16 5 C 0.54 18.55 7.82 87.66 0.69 19.23 16 6 O -0.56 -24.11 15.52 -3.04 -0.05 -24.16 16 7 C -0.11 -4.27 6.16 71.24 0.44 -3.83 16 8 S -0.17 -8.91 18.55 -56.49 -1.05 -9.96 16 9 C -0.53 -31.04 10.04 67.96 0.68 -30.36 16 10 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 11 C 0.05 2.67 5.50 84.86 0.47 3.14 16 12 N -0.92 -56.25 13.97 21.65 0.30 -55.94 16 13 Si 0.91 45.31 27.74 68.60 1.90 47.21 16 14 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 15 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 17 C -0.08 -1.29 2.28 -10.74 -0.02 -1.32 16 18 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 19 C -0.12 -1.57 5.09 30.68 0.16 -1.41 16 20 C -0.12 -1.35 6.09 30.65 0.19 -1.17 16 21 C 0.06 0.60 6.55 86.32 0.57 1.16 16 22 N -0.70 -8.73 6.85 -514.01 -3.52 -12.25 16 23 C 0.06 0.79 5.23 86.33 0.45 1.24 16 24 H 0.08 1.29 6.52 -2.39 -0.02 1.27 16 25 H 0.07 1.19 6.33 -2.38 -0.02 1.17 16 26 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.41 7.51 7.20 -92.71 -0.67 6.84 16 28 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 31 H 0.07 0.89 6.47 -2.38 -0.02 0.87 16 32 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.35 3.36 8.90 -89.69 -0.80 2.57 16 38 H 0.08 0.97 6.81 -2.39 -0.02 0.95 16 39 H 0.04 0.55 6.29 -2.39 -0.02 0.54 16 Total: -1.00 -72.10 320.17 -0.73 -72.82 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -0.45 Total: 14.00 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: 4.34 Total: -12.55 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -5.43 Total: -87.37 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.96 kcal Total: -72.10 -0.73 -72.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056679.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.281 kcal (2) G-P(sol) polarization free energy of solvation -72.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds