Wall clock time and date at job start Mon Mar 30 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 N 1.46497 * 109.47271 * 240.00087 * 2 1 3 5 5 C 1.34783 * 119.99991 * 84.99706 * 4 2 1 6 6 O 1.21281 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00015 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47013 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99875 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00161 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99725 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00362 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99778 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47045 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47329 * 120.00100 * 13 11 9 16 16 H 1.48501 * 109.47025 * 239.99929 * 13 11 9 17 17 C 1.52993 * 109.47011 * 120.00230 * 2 1 3 18 18 H 1.09000 * 109.50803 * 180.08111 * 17 2 1 19 19 C 1.53129 * 109.53719 * 300.13752 * 17 2 1 20 20 C 1.53123 * 109.15931 * 177.57614 * 19 17 2 21 21 C 1.53039 * 109.31189 * 302.40768 * 20 19 17 22 22 N 1.46842 * 109.52266 * 59.15550 * 21 20 19 23 23 C 1.46849 * 111.20050 * 298.25785 * 22 21 20 24 24 H 1.09001 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46946 * 299.99702 * 1 2 3 26 26 H 1.08997 * 109.47187 * 59.99800 * 1 2 3 27 27 H 0.96996 * 120.00088 * 265.00269 * 4 2 1 28 28 H 1.09002 * 109.46660 * 300.00102 * 7 5 4 29 29 H 1.09002 * 109.47022 * 59.99935 * 7 5 4 30 30 H 0.97001 * 119.99700 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.49266 * 57.69305 * 19 17 2 32 32 H 1.08995 * 109.55725 * 297.50051 * 19 17 2 33 33 H 1.09002 * 109.50371 * 182.44317 * 20 19 17 34 34 H 1.09003 * 109.50070 * 62.36477 * 20 19 17 35 35 H 1.08995 * 109.46501 * 179.17754 * 21 20 19 36 36 H 1.09002 * 109.45552 * 299.15457 * 21 20 19 37 37 H 1.00903 * 110.99924 * 174.16340 * 22 21 20 38 38 H 1.09001 * 109.46071 * 181.75754 * 23 22 21 39 39 H 1.09002 * 109.46350 * 301.73871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 16 2.7106 0.4346 -4.9731 9 6 3.3137 -0.6306 -6.2404 10 1 3.5222 -1.6673 -6.0207 11 6 3.5197 -0.1377 -7.5214 12 7 3.2642 1.1254 -7.7897 13 14 4.1585 -1.2672 -8.8653 14 1 4.3647 -2.6292 -8.3106 15 1 3.1707 -1.3274 -9.9724 16 1 5.4486 -0.7427 -9.3810 17 6 2.0400 -0.7213 1.2492 18 1 3.1300 -0.7204 1.2505 19 6 1.5275 -0.0026 2.5005 20 6 1.9922 -0.7658 3.7440 21 6 1.4839 -2.2075 3.6724 22 7 2.0029 -2.8511 2.4588 23 6 1.5302 -2.1642 1.2499 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.2491 -1.6317 -1.1526 28 1 3.6480 -1.1212 -3.3986 29 1 1.9760 -1.5505 -3.8326 30 1 3.4086 1.4699 -8.6849 31 1 0.4383 0.0314 2.4799 32 1 1.9242 1.0122 2.5266 33 1 1.5942 -0.2835 4.6368 34 1 3.0815 -0.7656 3.7852 35 1 1.8256 -2.7571 4.5494 36 1 0.3942 -2.2074 3.6456 37 1 1.7601 -3.8302 2.4366 38 1 1.9057 -2.6825 0.3675 39 1 0.4403 -2.1643 1.2348 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000706056681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:38 Heat of formation + Delta-G solvation = -52.718281 kcal Electronic energy + Delta-G solvation = -18779.739258 eV Core-core repulsion = 15847.620450 eV Total energy + Delta-G solvation = -2932.118807 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.00709 -38.52186 -35.37288 -32.59619 -32.41336 -31.53188 -29.39037 -28.25007 -25.48579 -24.45283 -24.11505 -21.59971 -20.17150 -19.28524 -17.90639 -16.96705 -16.25697 -15.73198 -15.30508 -14.83123 -14.80982 -14.79161 -14.23001 -14.03788 -13.48324 -13.28936 -13.17229 -13.00086 -12.70152 -12.46788 -12.10683 -11.90890 -11.39937 -11.15252 -11.05938 -11.00353 -10.86844 -10.77713 -10.64231 -10.49857 -9.78428 -9.33359 -9.06428 -8.86068 -8.75363 -8.21050 -6.48014 -6.20442 -3.90595 3.06393 3.14135 3.22549 3.29421 3.34423 3.74052 3.84580 4.21795 4.45202 4.53693 4.63835 4.80799 4.92667 5.09450 5.14777 5.16450 5.22066 5.25423 5.33006 5.40120 5.53097 5.54838 5.62077 5.70713 5.72770 5.80400 5.89229 5.91965 6.04755 6.09167 6.16917 6.31583 6.67531 6.72630 7.02445 7.61321 7.76483 8.36891 8.66789 9.25072 10.87042 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.003304 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.500498 B = 8473.366444 C = 8894.174175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.735 5.735 5 C 0.532 3.468 6 O -0.518 6.518 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.534 4.534 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.919 3.081 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.091 4.091 18 H 0.085 0.915 19 C -0.117 4.117 20 C -0.118 4.118 21 C 0.057 3.943 22 N -0.691 5.691 23 C 0.059 3.941 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.396 0.604 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.268 0.732 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.029 0.971 37 H 0.343 0.657 38 H 0.073 0.927 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.380 -7.858 22.353 24.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.043 3.957 3 H 0.108 0.892 4 N -0.389 5.389 5 C 0.319 3.681 6 O -0.392 6.392 7 C -0.304 4.304 8 S 0.166 5.834 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.110 4.110 18 H 0.103 0.897 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.072 4.072 22 N -0.322 5.322 23 C -0.070 4.070 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.230 0.770 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.161 0.839 38 H 0.092 0.908 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.269 -5.402 22.143 23.189 hybrid contribution -0.091 -2.871 -0.846 2.994 sum -4.361 -8.273 21.297 23.260 Atomic orbital electron populations 1.22300 0.95735 1.01928 1.02603 1.20855 0.93923 0.97506 0.83399 0.89249 1.46151 1.69334 1.13885 1.09561 1.20305 0.76792 0.87235 0.83803 1.90692 1.48342 1.15750 1.84432 1.23539 1.03658 1.04817 0.98435 1.85389 1.86289 1.12940 0.98805 1.22914 1.50814 0.98175 0.96372 0.90894 1.24997 0.95130 0.95548 0.97968 1.70033 1.45637 1.13227 1.21414 0.86115 0.78506 0.80143 0.80706 1.19615 1.20589 1.20576 1.21437 1.01622 0.94078 0.93908 0.89707 1.21664 1.01009 0.99176 0.93623 1.21584 1.01859 0.94459 0.97646 1.21926 0.96757 0.95744 0.92807 1.60225 1.63797 1.06279 1.01876 1.22039 0.97652 0.94689 0.92670 0.92570 0.91776 0.91715 0.76967 0.89259 0.89324 0.92261 0.91541 0.91302 0.91543 0.91084 0.90940 0.95309 0.83940 0.90843 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.87 8.78 37.16 0.33 -1.55 16 2 C 0.15 1.77 2.41 -67.93 -0.16 1.60 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 4 N -0.73 -9.94 5.00 -53.81 -0.27 -10.21 16 5 C 0.53 10.01 7.81 -10.98 -0.09 9.93 16 6 O -0.52 -11.80 15.52 5.56 0.09 -11.71 16 7 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 8 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 9 C -0.53 -15.34 9.50 30.94 0.29 -15.04 16 10 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 11 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 12 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 13 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.09 -0.85 2.34 -90.54 -0.21 -1.07 16 18 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.12 -0.95 5.00 -26.60 -0.13 -1.08 16 20 C -0.12 -0.85 6.09 -26.65 -0.16 -1.02 16 21 C 0.06 0.40 6.55 -3.84 -0.03 0.37 16 22 N -0.69 -5.39 6.85 -113.82 -0.78 -6.17 16 23 C 0.06 0.49 5.32 -3.83 -0.02 0.47 16 24 H 0.06 0.56 6.41 -51.93 -0.33 0.23 16 25 H 0.06 0.60 6.38 -51.93 -0.33 0.27 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.40 4.34 6.88 -40.82 -0.28 4.06 16 28 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 31 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.34 2.16 8.90 -39.29 -0.35 1.81 16 38 H 0.07 0.60 6.54 -51.93 -0.34 0.26 16 39 H 0.04 0.32 6.39 -51.93 -0.33 -0.01 16 LS Contribution 322.27 15.07 4.86 4.86 Total: -1.00 -33.71 322.27 -8.70 -42.41 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -6.04 Total: 2.09 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -0.06 Total: -8.30 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.31 Total: -41.97 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.09 Total: -11.71 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.71 -8.70 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.310 kcal (2) G-P(sol) polarization free energy of solvation -33.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds