Wall clock time and date at job start Mon Mar 30 2020 05:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46954 * 2 1 4 4 N 1.46497 * 109.47271 * 240.00087 * 2 1 3 5 5 C 1.34783 * 119.99991 * 84.99706 * 4 2 1 6 6 O 1.21281 * 120.00059 * 0.02562 * 5 4 2 7 7 C 1.50702 * 120.00015 * 180.02562 * 5 4 2 8 8 S 1.81000 * 109.47013 * 180.02562 * 7 5 4 9 9 C 1.76199 * 99.99875 * 179.97438 * 8 7 5 10 10 H 1.07998 * 120.00161 * 0.02562 * 9 8 7 11 11 C 1.38795 * 119.99725 * 179.97438 * 9 8 7 12 12 N 1.31631 * 120.00362 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99778 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47045 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47329 * 120.00100 * 13 11 9 16 16 H 1.48501 * 109.47025 * 239.99929 * 13 11 9 17 17 C 1.52993 * 109.47011 * 120.00230 * 2 1 3 18 18 H 1.09000 * 109.50803 * 180.08111 * 17 2 1 19 19 C 1.53129 * 109.53719 * 300.13752 * 17 2 1 20 20 C 1.53123 * 109.15931 * 177.57614 * 19 17 2 21 21 C 1.53039 * 109.31189 * 302.40768 * 20 19 17 22 22 N 1.46842 * 109.52266 * 59.15550 * 21 20 19 23 23 C 1.46849 * 111.20050 * 298.25785 * 22 21 20 24 24 H 1.09001 * 109.47383 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.46946 * 299.99702 * 1 2 3 26 26 H 1.08997 * 109.47187 * 59.99800 * 1 2 3 27 27 H 0.96996 * 120.00088 * 265.00269 * 4 2 1 28 28 H 1.09002 * 109.46660 * 300.00102 * 7 5 4 29 29 H 1.09002 * 109.47022 * 59.99935 * 7 5 4 30 30 H 0.97001 * 119.99700 * 179.97438 * 12 11 9 31 31 H 1.09000 * 109.49266 * 57.69305 * 19 17 2 32 32 H 1.08995 * 109.55725 * 297.50051 * 19 17 2 33 33 H 1.09002 * 109.50371 * 182.44317 * 20 19 17 34 34 H 1.09003 * 109.50070 * 62.36477 * 20 19 17 35 35 H 1.08995 * 109.46501 * 179.17754 * 21 20 19 36 36 H 1.09002 * 109.45552 * 299.15457 * 21 20 19 37 37 H 1.00903 * 110.99924 * 174.16340 * 22 21 20 38 38 H 1.09001 * 109.46071 * 181.75754 * 23 22 21 39 39 H 1.09002 * 109.46350 * 301.73871 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 16 2.7106 0.4346 -4.9731 9 6 3.3137 -0.6306 -6.2404 10 1 3.5222 -1.6673 -6.0207 11 6 3.5197 -0.1377 -7.5214 12 7 3.2642 1.1254 -7.7897 13 14 4.1585 -1.2672 -8.8653 14 1 4.3647 -2.6292 -8.3106 15 1 3.1707 -1.3274 -9.9724 16 1 5.4486 -0.7427 -9.3810 17 6 2.0400 -0.7213 1.2492 18 1 3.1300 -0.7204 1.2505 19 6 1.5275 -0.0026 2.5005 20 6 1.9922 -0.7658 3.7440 21 6 1.4839 -2.2075 3.6724 22 7 2.0029 -2.8511 2.4588 23 6 1.5302 -2.1642 1.2499 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.2491 -1.6317 -1.1526 28 1 3.6480 -1.1212 -3.3986 29 1 1.9760 -1.5505 -3.8326 30 1 3.4086 1.4699 -8.6849 31 1 0.4383 0.0314 2.4799 32 1 1.9242 1.0122 2.5266 33 1 1.5942 -0.2835 4.6368 34 1 3.0815 -0.7656 3.7852 35 1 1.8256 -2.7571 4.5494 36 1 0.3942 -2.2074 3.6456 37 1 1.7601 -3.8302 2.4366 38 1 1.9057 -2.6825 0.3675 39 1 0.4403 -2.1643 1.2348 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706056681.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:38 Heat of formation + Delta-G solvation = -77.868536 kcal Electronic energy + Delta-G solvation = -18780.829855 eV Core-core repulsion = 15847.620450 eV Total energy + Delta-G solvation = -2933.209404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11403 -39.61044 -36.43511 -34.58666 -33.56185 -32.40901 -30.59038 -29.38796 -27.66651 -25.30883 -24.77427 -22.49812 -21.45308 -20.13129 -19.78334 -18.08679 -17.54886 -16.88953 -16.79095 -16.47198 -15.99815 -15.87084 -15.42095 -14.92899 -14.68665 -14.55992 -14.31243 -13.95906 -13.89685 -13.44564 -13.31796 -13.15913 -12.95570 -12.91239 -12.58870 -12.19586 -11.95941 -11.72279 -11.59098 -11.37128 -11.21548 -11.15900 -10.88135 -10.27326 -10.11498 -9.33995 -8.66734 -8.34870 -6.12892 1.27283 1.41585 1.47353 1.58682 1.62639 2.25719 2.30106 2.99329 3.23231 3.32507 3.70484 3.84115 3.90254 3.97705 4.16154 4.24666 4.28953 4.35644 4.44855 4.50232 4.51400 4.64787 4.71343 4.82748 4.85943 4.96197 5.01365 5.02490 5.14594 5.28988 5.30696 5.42086 5.50030 5.54529 6.09129 6.20044 6.50548 6.52876 7.06535 7.25976 8.74638 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.042190 B = 0.003304 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.500498 B = 8473.366444 C = 8894.174175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.148 3.852 3 H 0.065 0.935 4 N -0.709 5.709 5 C 0.534 3.466 6 O -0.565 6.565 7 C -0.130 4.130 8 S -0.151 6.151 9 C -0.546 4.546 10 H 0.083 0.917 11 C 0.012 3.988 12 N -0.912 5.912 13 Si 1.000 3.000 14 H -0.256 1.256 15 H -0.274 1.274 16 H -0.274 1.274 17 C -0.081 4.081 18 H 0.074 0.926 19 C -0.117 4.117 20 C -0.116 4.116 21 C 0.056 3.944 22 N -0.699 5.699 23 C 0.060 3.940 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.033 0.967 27 H 0.412 0.588 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.271 0.729 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.034 0.966 37 H 0.353 0.647 38 H 0.076 0.924 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.357 -10.425 23.617 26.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.043 3.957 3 H 0.083 0.917 4 N -0.364 5.364 5 C 0.320 3.680 6 O -0.443 6.443 7 C -0.281 4.281 8 S 0.076 5.924 9 C -0.694 4.694 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.822 3.178 14 H -0.180 1.180 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.100 4.100 18 H 0.092 0.908 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.073 4.073 22 N -0.331 5.331 23 C -0.069 4.069 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.052 0.948 27 H 0.250 0.750 28 H 0.126 0.874 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.172 0.828 38 H 0.094 0.906 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.249 -8.021 23.459 25.154 hybrid contribution -0.119 -2.087 -1.083 2.354 sum -4.368 -10.108 22.376 24.939 Atomic orbital electron populations 1.22244 0.94756 1.02834 1.02081 1.20979 0.94610 0.96556 0.83515 0.91668 1.45931 1.67490 1.14480 1.08458 1.20066 0.76649 0.86602 0.84661 1.90683 1.50717 1.17698 1.85183 1.23385 1.05461 1.03206 0.96096 1.85571 1.86703 1.17343 1.02796 1.23240 1.50836 0.98450 0.96824 0.89929 1.26143 0.95083 0.97232 1.00769 1.70193 1.46878 1.15503 1.22239 0.84889 0.77820 0.78206 0.76920 1.18003 1.19905 1.19938 1.21321 1.00860 0.94918 0.92927 0.90805 1.21679 1.01384 0.99022 0.93398 1.21580 1.01317 0.94832 0.97632 1.21975 0.97055 0.95467 0.92843 1.60202 1.64083 1.06977 1.01830 1.21990 0.97872 0.93738 0.93293 0.90879 0.89747 0.94819 0.75020 0.87363 0.87259 0.91993 0.90820 0.91676 0.90082 0.92027 0.89858 0.94782 0.82829 0.90563 0.93864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.78 71.98 0.63 -2.78 16 2 C 0.15 3.41 2.41 44.99 0.11 3.51 16 3 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 4 N -0.71 -18.38 5.00 -442.54 -2.21 -20.60 16 5 C 0.53 20.07 7.81 87.66 0.68 20.75 16 6 O -0.56 -26.54 15.52 -3.03 -0.05 -26.59 16 7 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 8 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 9 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 10 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 11 C 0.01 0.71 5.49 84.86 0.47 1.18 16 12 N -0.91 -56.40 13.22 21.65 0.29 -56.11 16 13 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 14 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 15 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 C -0.08 -1.38 2.34 -10.74 -0.03 -1.41 16 18 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 19 C -0.12 -1.69 5.00 30.68 0.15 -1.53 16 20 C -0.12 -1.42 6.09 30.65 0.19 -1.23 16 21 C 0.06 0.62 6.55 86.33 0.57 1.19 16 22 N -0.70 -9.03 6.85 -514.01 -3.52 -12.55 16 23 C 0.06 0.85 5.32 86.32 0.46 1.31 16 24 H 0.07 1.30 6.41 -2.39 -0.02 1.28 16 25 H 0.08 1.44 6.38 -2.39 -0.02 1.43 16 26 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.41 8.08 6.88 -92.71 -0.64 7.45 16 28 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 29 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 30 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.07 0.97 6.32 -2.39 -0.02 0.95 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.35 3.46 8.90 -89.69 -0.80 2.66 16 38 H 0.08 1.02 6.54 -2.39 -0.02 1.00 16 39 H 0.04 0.58 6.39 -2.39 -0.02 0.57 16 Total: -1.00 -75.02 322.27 -0.69 -75.71 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -0.38 Total: 18.52 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 4.32 Total: -14.59 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -5.44 Total: -89.26 kcal Atomic # 8 Polarization: -26.54 SS G_CDS: -0.05 Total: -26.59 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -75.02 -0.69 -75.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056681.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.162 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds