Wall clock time and date at job start Mon Mar 30 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47165 * 2 1 4 4 N 1.46500 * 109.47176 * 120.00395 * 2 1 3 5 5 C 1.34775 * 119.99894 * 274.99988 * 4 2 1 6 6 O 1.21276 * 119.99984 * 359.97438 * 5 4 2 7 7 C 1.50698 * 120.00022 * 179.97438 * 5 4 2 8 8 S 1.80998 * 109.47116 * 179.97438 * 7 5 4 9 9 C 1.76199 * 100.00013 * 179.97438 * 8 7 5 10 10 H 1.07997 * 120.00250 * 0.02562 * 9 8 7 11 11 C 1.38798 * 120.00102 * 179.72368 * 9 8 7 12 12 N 1.31626 * 120.00155 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00292 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47145 * 60.00107 * 13 11 9 15 15 H 1.48496 * 109.47291 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47229 * 300.00299 * 13 11 9 17 17 C 1.53005 * 109.46971 * 239.99997 * 2 1 3 18 18 H 1.09001 * 109.50312 * 300.08289 * 17 2 1 19 19 C 1.53115 * 109.49959 * 60.19898 * 17 2 1 20 20 C 1.53130 * 109.15737 * 177.59468 * 19 17 2 21 21 C 1.53036 * 109.27711 * 302.34222 * 20 19 17 22 22 N 1.46847 * 109.51926 * 59.18494 * 21 20 19 23 23 C 1.46843 * 111.19801 * 298.24963 * 22 21 20 24 24 H 1.09003 * 109.47098 * 300.00126 * 1 2 3 25 25 H 1.09001 * 109.47117 * 59.99626 * 1 2 3 26 26 H 1.08998 * 109.47868 * 179.97438 * 1 2 3 27 27 H 0.97002 * 120.00447 * 94.99623 * 4 2 1 28 28 H 1.09001 * 109.47434 * 59.99478 * 7 5 4 29 29 H 1.08999 * 109.47072 * 299.99957 * 7 5 4 30 30 H 0.97004 * 120.00604 * 179.97438 * 12 11 9 31 31 H 1.09001 * 109.52701 * 297.49952 * 19 17 2 32 32 H 1.08999 * 109.52480 * 57.69112 * 19 17 2 33 33 H 1.09004 * 109.49800 * 182.40374 * 20 19 17 34 34 H 1.08998 * 109.50190 * 62.29279 * 20 19 17 35 35 H 1.08997 * 109.46565 * 299.16542 * 21 20 19 36 36 H 1.09002 * 109.45856 * 179.18968 * 21 20 19 37 37 H 1.00896 * 111.00449 * 62.35139 * 22 21 20 38 38 H 1.09001 * 109.46783 * 301.73606 * 23 22 21 39 39 H 1.09003 * 109.45881 * 181.75733 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1584 2.4115 7 6 2.6488 -0.7290 3.5877 8 16 2.7106 0.4342 4.9730 9 6 3.3122 -0.6315 6.2407 10 1 3.5209 -1.6680 6.0209 11 6 3.5238 -0.1373 7.5203 12 7 3.2747 1.1274 7.7870 13 14 4.1610 -1.2672 8.8645 14 1 5.4839 -1.8123 8.4671 15 1 4.3001 -0.5021 10.1296 16 1 3.2049 -2.3856 9.0655 17 6 2.0399 -0.7213 -1.2493 18 1 1.6757 -1.7486 -1.2506 19 6 1.5340 0.0029 -2.4999 20 6 2.0977 -0.6893 -3.7440 21 6 3.6264 -0.6906 -3.6725 22 7 4.0602 -1.3954 -2.4594 23 6 3.5704 -0.7218 -1.2501 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 2.2490 -1.6319 1.1526 28 1 3.6479 -1.1216 3.3985 29 1 1.9759 -1.5508 3.8325 30 1 3.4222 1.4728 8.6814 31 1 0.4448 -0.0321 -2.5256 32 1 1.8656 1.0410 -2.4789 33 1 1.7756 -0.1526 -4.6364 34 1 1.7343 -1.7161 -3.7853 35 1 3.9896 0.3367 -3.6452 36 1 4.0306 -1.1955 -4.5499 37 1 3.7688 -2.3612 -2.4786 38 1 3.9338 0.3057 -1.2341 39 1 3.9338 -1.2493 -0.3681 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000706056929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:29:42 Heat of formation + Delta-G solvation = -82.264303 kcal Electronic energy + Delta-G solvation = -18795.199917 eV Core-core repulsion = 15861.799898 eV Total energy + Delta-G solvation = -2933.400019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.09405 -39.68856 -36.50002 -34.58552 -33.47837 -32.21181 -30.69033 -29.57848 -27.66009 -25.23835 -24.06066 -22.48834 -21.57739 -21.10916 -19.79728 -17.86388 -17.46859 -16.87998 -16.77375 -16.40564 -16.02935 -15.87486 -15.53824 -14.88076 -14.61229 -14.51508 -14.31033 -13.85104 -13.69440 -13.40890 -13.16996 -13.04863 -12.86392 -12.74650 -12.60784 -12.54556 -12.06216 -11.92046 -11.75075 -11.54116 -11.41086 -11.12803 -10.87015 -10.27714 -10.14784 -9.23384 -8.66595 -8.34409 -6.12663 1.27271 1.44115 1.47131 1.57027 1.63658 2.26231 2.30559 2.99584 3.31795 3.33062 3.63368 3.81226 3.87486 3.99820 4.09836 4.27600 4.29560 4.36887 4.47844 4.49557 4.51485 4.58202 4.62473 4.76561 4.92091 5.01213 5.02000 5.07221 5.15672 5.17382 5.31140 5.40798 5.41523 5.54618 6.06474 6.19614 6.51936 6.54135 7.06654 7.27643 8.74601 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.038000 B = 0.003402 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.660196 B = 8228.532286 C = 8633.736671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.151 3.849 3 H 0.060 0.940 4 N -0.707 5.707 5 C 0.535 3.465 6 O -0.566 6.566 7 C -0.130 4.130 8 S -0.152 6.152 9 C -0.548 4.548 10 H 0.083 0.917 11 C 0.013 3.987 12 N -0.912 5.912 13 Si 0.999 3.001 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.262 1.262 17 C -0.114 4.114 18 H 0.093 0.907 19 C -0.114 4.114 20 C -0.149 4.149 21 C 0.053 3.947 22 N -0.692 5.692 23 C 0.064 3.936 24 H 0.031 0.969 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.414 0.586 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.271 0.729 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.349 0.651 38 H 0.054 0.946 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.758 -9.514 -23.723 25.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.046 3.954 3 H 0.079 0.921 4 N -0.361 5.361 5 C 0.321 3.679 6 O -0.444 6.444 7 C -0.281 4.281 8 S 0.075 5.925 9 C -0.696 4.696 10 H 0.101 0.899 11 C -0.192 4.192 12 N -0.548 5.548 13 Si 0.820 3.180 14 H -0.186 1.186 15 H -0.204 1.204 16 H -0.186 1.186 17 C -0.134 4.134 18 H 0.112 0.888 19 C -0.152 4.152 20 C -0.188 4.188 21 C -0.077 4.077 22 N -0.321 5.321 23 C -0.066 4.066 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.091 0.909 27 H 0.251 0.749 28 H 0.127 0.873 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.072 0.928 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.591 -7.127 -23.529 24.721 hybrid contribution -0.253 -1.936 1.064 2.224 sum -2.843 -9.064 -22.465 24.391 Atomic orbital electron populations 1.22181 0.94778 1.02830 1.01984 1.20945 0.94402 0.96487 0.83591 0.92150 1.45833 1.67450 1.14452 1.08343 1.20036 0.76652 0.86571 0.84645 1.90686 1.50747 1.17796 1.85169 1.23378 1.05472 1.03159 0.96084 1.85574 1.86758 1.17335 1.02815 1.23184 1.51014 0.98429 0.96949 0.89903 1.26136 0.95047 0.97202 1.00771 1.70177 1.46833 1.15418 1.22394 0.85001 0.79103 0.77731 0.76149 1.18619 1.20410 1.18621 1.22058 0.97375 1.00758 0.93258 0.88841 1.21646 1.01313 0.99115 0.93169 1.22201 0.96981 1.01588 0.98021 1.22087 0.93404 0.99432 0.92771 1.60618 1.62949 1.06678 1.01853 1.21990 0.91828 0.99502 0.93321 0.95010 0.89804 0.90943 0.74903 0.87305 0.87315 0.91988 0.90354 0.92557 0.90340 0.90972 0.92029 0.89596 0.83240 0.92765 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.29 9.14 71.98 0.66 -2.63 16 2 C 0.15 3.29 2.16 44.99 0.10 3.39 16 3 H 0.06 1.70 7.58 -2.39 -0.02 1.68 16 4 N -0.71 -17.39 4.40 -442.54 -1.95 -19.34 16 5 C 0.54 19.70 7.81 87.66 0.68 20.39 16 6 O -0.57 -26.39 15.52 -3.02 -0.05 -26.44 16 7 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 8 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 9 C -0.55 -31.50 9.50 67.95 0.65 -30.86 16 10 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 11 C 0.01 0.75 5.49 84.86 0.47 1.22 16 12 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 13 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 14 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 17 C -0.11 -1.66 1.97 -10.74 -0.02 -1.68 16 18 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 19 C -0.11 -1.47 4.86 30.68 0.15 -1.32 16 20 C -0.15 -1.48 6.08 30.65 0.19 -1.30 16 21 C 0.05 0.65 6.55 86.33 0.57 1.21 16 22 N -0.69 -10.20 6.87 -514.00 -3.53 -13.73 16 23 C 0.06 1.10 5.67 86.33 0.49 1.59 16 24 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.38 6.49 -2.39 -0.02 1.37 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.41 7.34 8.39 -92.71 -0.78 6.57 16 28 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.08 0.89 6.58 -2.39 -0.02 0.87 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.35 3.96 8.86 -89.70 -0.79 3.16 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.34 7.48 -2.39 -0.02 1.32 16 Total: -1.00 -75.25 327.89 -0.54 -75.79 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -0.53 Total: 18.50 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.36 Total: -14.70 kcal Atomic # 7 Polarization: -84.05 SS G_CDS: -5.19 Total: -89.24 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.05 Total: -26.44 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -75.25 -0.54 -75.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000706056929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.475 kcal (2) G-P(sol) polarization free energy of solvation -75.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds