Wall clock time and date at job start Mon Mar 30 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00003 * 2 1 4 4 C 1.53773 * 113.61409 * 185.00255 * 3 2 1 5 5 C 1.53790 * 87.08081 * 220.01833 * 4 3 2 6 6 N 1.46498 * 113.61363 * 139.98090 * 5 4 3 7 7 C 1.34779 * 120.00101 * 154.99881 * 6 5 4 8 8 O 1.21280 * 119.99574 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99940 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47556 * 320.00134 * 9 7 6 11 11 N 1.46905 * 109.46910 * 200.00173 * 9 7 6 12 12 C 1.52998 * 109.47049 * 80.00455 * 9 7 6 13 13 C 1.53006 * 109.47150 * 184.99898 * 12 9 7 14 14 C 1.50703 * 109.46994 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99811 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99872 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47254 * 90.00456 * 18 16 14 20 20 H 1.48499 * 109.47069 * 210.00118 * 18 16 14 21 21 H 1.48501 * 109.47349 * 329.99923 * 18 16 14 22 22 C 1.53780 * 87.07789 * 25.43561 * 5 4 3 23 23 H 1.08995 * 109.47190 * 59.99709 * 1 2 3 24 24 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47222 * 299.99664 * 1 2 3 26 26 H 1.09002 * 112.90764 * 316.25360 * 3 2 1 27 27 H 1.08996 * 113.61547 * 105.47260 * 4 3 2 28 28 H 1.09000 * 113.61526 * 334.56572 * 4 3 2 29 29 H 1.08994 * 113.61447 * 270.79899 * 5 4 3 30 30 H 0.97003 * 120.00155 * 334.99932 * 6 5 4 31 31 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 32 32 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 33 33 H 1.09001 * 109.47115 * 304.99584 * 12 9 7 34 34 H 1.09003 * 109.47470 * 64.99668 * 12 9 7 35 35 H 1.09001 * 109.46854 * 299.99845 * 13 12 9 36 36 H 1.08993 * 109.47097 * 59.99572 * 13 12 9 37 37 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.62107 * 89.11788 * 22 5 4 39 39 H 1.09004 * 113.61106 * 220.02389 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7283 2.0520 -0.1229 5 6 3.5206 3.1738 0.9084 6 7 4.6000 3.2722 1.8939 7 6 4.8398 4.4435 2.5160 8 8 4.1617 5.4159 2.2602 9 6 5.9499 4.5445 3.5302 10 1 5.9681 3.6414 4.1402 11 7 5.7215 5.7126 4.3914 12 6 7.2892 4.6984 2.8068 13 6 8.4269 4.6758 3.8296 14 6 9.7461 4.8281 3.1171 15 1 9.7706 4.9302 2.0422 16 6 10.9217 4.8369 3.8374 17 7 10.8918 4.7119 5.1462 18 14 12.5568 5.0248 2.9541 19 1 12.9003 6.4658 2.8498 20 1 13.6160 4.3176 3.7177 21 1 12.4541 4.4406 1.5928 22 6 2.3009 2.3815 1.4077 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6108 2.3441 -0.6943 27 1 4.0255 2.4134 -1.1073 28 1 4.3572 1.2381 0.2380 29 1 3.2657 4.1351 0.4624 30 1 5.1422 2.4944 2.0987 31 1 5.7003 6.5631 3.8490 32 1 4.8743 5.6053 4.9289 33 1 7.4179 3.8770 2.1020 34 1 7.3042 5.6456 2.2675 35 1 8.2982 5.4973 4.5344 36 1 8.4119 3.7288 4.3689 37 1 11.7189 4.7185 5.6531 38 1 2.5394 1.6578 2.1871 39 1 1.4456 3.0089 1.6589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707047171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:00 Heat of formation + Delta-G solvation = -34.537082 kcal Electronic energy + Delta-G solvation = -18475.548563 eV Core-core repulsion = 15544.218152 eV Total energy + Delta-G solvation = -2931.330411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.21830 -38.47230 -35.16959 -33.40357 -32.78408 -30.09348 -29.33713 -26.88968 -26.09429 -25.18405 -23.25692 -20.70751 -20.40793 -19.66006 -17.36263 -17.13923 -16.20789 -15.89617 -15.74687 -15.34778 -14.69479 -14.43022 -14.31174 -13.95260 -13.77276 -13.48866 -13.21048 -12.87495 -12.79760 -12.31817 -12.04574 -11.86456 -11.55013 -11.24140 -11.04990 -10.89401 -10.66720 -10.54657 -10.20859 -10.12928 -9.79480 -9.37270 -9.09452 -8.99246 -8.35023 -8.20261 -8.01276 -5.93474 -3.95643 1.33802 2.18708 2.72426 3.29337 3.35391 3.41632 3.44487 4.02417 4.11081 4.45980 4.50448 4.51938 4.75061 4.77206 4.86483 5.06053 5.23485 5.31041 5.33506 5.36503 5.42085 5.52075 5.55979 5.57685 5.83209 5.91664 6.41413 6.47554 6.65377 7.08856 7.37117 7.58911 7.76468 7.79764 7.96501 8.13432 8.29472 8.48737 9.12423 9.67539 11.17449 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.003170 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.471642 B = 8831.620781 C = 9450.412239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.250 6.250 3 C -0.081 4.081 4 C -0.118 4.118 5 C 0.127 3.873 6 N -0.719 5.719 7 C 0.485 3.515 8 O -0.555 6.555 9 C 0.078 3.922 10 H 0.098 0.902 11 N -0.807 5.807 12 C -0.095 4.095 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.077 0.923 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.405 0.595 31 H 0.348 0.652 32 H 0.334 0.666 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.035 0.965 36 H 0.013 0.987 37 H 0.259 0.741 38 H 0.098 0.902 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.562 -8.186 -9.112 23.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.022 6.022 3 C -0.210 4.210 4 C -0.157 4.157 5 C 0.019 3.981 6 N -0.370 5.370 7 C 0.271 3.729 8 O -0.433 6.433 9 C -0.038 4.038 10 H 0.116 0.884 11 N -0.335 5.335 12 C -0.133 4.133 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.070 0.930 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.181 4.181 23 H 0.094 0.906 24 H 0.118 0.882 25 H 0.096 0.904 26 H 0.125 0.875 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.133 0.867 30 H 0.240 0.760 31 H 0.162 0.838 32 H 0.145 0.855 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.570 -8.578 -8.790 23.104 hybrid contribution -0.673 0.773 -1.029 1.452 sum -20.243 -7.805 -9.818 23.813 Atomic orbital electron populations 1.23362 0.94465 1.06381 1.04936 1.86904 1.07212 1.10393 1.97669 1.24494 1.01023 0.94119 1.01408 1.23210 0.93244 0.98542 1.00728 1.22339 0.87460 0.98650 0.89636 1.46126 1.35193 1.13460 1.42266 1.22818 0.85433 0.82196 0.82413 1.90634 1.50552 1.36899 1.65169 1.21857 0.93648 0.96344 0.91981 0.88380 1.58997 1.42604 1.04027 1.27840 1.21658 0.91852 1.00710 0.99117 1.19018 0.90048 0.98019 0.93526 1.21279 0.91585 1.49847 0.93366 0.92992 1.24993 0.99061 0.95490 0.94808 1.69975 1.27246 1.50532 1.05445 0.86648 0.83852 0.78137 0.79651 1.20732 1.21288 1.20001 1.23813 0.99293 0.99494 0.95483 0.90568 0.88212 0.90432 0.87461 0.89592 0.88420 0.86656 0.75989 0.83843 0.85478 0.92798 0.92869 0.94686 0.96855 0.93096 0.88346 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.76 101.05 1.09 0.34 16 2 S -0.25 -2.19 22.17 -107.50 -2.38 -4.57 16 3 C -0.08 -0.65 4.28 -25.92 -0.11 -0.76 16 4 C -0.12 -1.00 7.42 -25.92 -0.19 -1.19 16 5 C 0.13 1.30 4.24 -67.11 -0.28 1.01 16 6 N -0.72 -8.50 5.35 -53.02 -0.28 -8.78 16 7 C 0.49 7.37 7.07 -10.99 -0.08 7.29 16 8 O -0.55 -9.91 15.85 5.56 0.09 -9.82 16 9 C 0.08 1.27 3.15 -68.86 -0.22 1.06 16 10 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 11 N -0.81 -13.49 8.44 -5.65 -0.05 -13.54 16 12 C -0.10 -1.89 4.78 -26.73 -0.13 -2.02 16 13 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.14 -1.23 7.47 -25.92 -0.19 -1.42 16 23 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 26 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.12 1.34 7.46 -51.93 -0.39 0.96 16 30 H 0.40 4.12 8.73 -40.82 -0.36 3.77 16 31 H 0.35 5.90 8.58 -39.29 -0.34 5.57 16 32 H 0.33 4.83 9.06 -39.29 -0.36 4.47 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.03 0.97 7.75 -51.93 -0.40 0.56 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 339.78 15.07 5.12 5.12 Total: -1.00 -32.32 339.78 -8.90 -41.23 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.45 Total: 8.37 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.66 Total: -8.53 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.40 Total: -48.52 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -2.19 SS G_CDS: -2.38 Total: -4.57 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.32 -8.90 -41.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707047171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.690 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds