Wall clock time and date at job start Mon Mar 30 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00003 * 2 1 4 4 C 1.53773 * 113.61409 * 185.00255 * 3 2 1 5 5 C 1.53790 * 87.08081 * 220.01833 * 4 3 2 6 6 N 1.46498 * 113.61363 * 139.98090 * 5 4 3 7 7 C 1.34779 * 120.00101 * 154.99881 * 6 5 4 8 8 O 1.21280 * 119.99574 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99940 * 179.97438 * 7 6 5 10 10 H 1.09001 * 109.47556 * 320.00134 * 9 7 6 11 11 N 1.46905 * 109.46910 * 200.00173 * 9 7 6 12 12 C 1.52998 * 109.47049 * 80.00455 * 9 7 6 13 13 C 1.53006 * 109.47150 * 184.99898 * 12 9 7 14 14 C 1.50703 * 109.46994 * 180.02562 * 13 12 9 15 15 H 1.07997 * 119.99811 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99821 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99872 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 119.99839 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47254 * 90.00456 * 18 16 14 20 20 H 1.48499 * 109.47069 * 210.00118 * 18 16 14 21 21 H 1.48501 * 109.47349 * 329.99923 * 18 16 14 22 22 C 1.53780 * 87.07789 * 25.43561 * 5 4 3 23 23 H 1.08995 * 109.47190 * 59.99709 * 1 2 3 24 24 H 1.08997 * 109.47182 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47222 * 299.99664 * 1 2 3 26 26 H 1.09002 * 112.90764 * 316.25360 * 3 2 1 27 27 H 1.08996 * 113.61547 * 105.47260 * 4 3 2 28 28 H 1.09000 * 113.61526 * 334.56572 * 4 3 2 29 29 H 1.08994 * 113.61447 * 270.79899 * 5 4 3 30 30 H 0.97003 * 120.00155 * 334.99932 * 6 5 4 31 31 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 32 32 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 33 33 H 1.09001 * 109.47115 * 304.99584 * 12 9 7 34 34 H 1.09003 * 109.47470 * 64.99668 * 12 9 7 35 35 H 1.09001 * 109.46854 * 299.99845 * 13 12 9 36 36 H 1.08993 * 109.47097 * 59.99572 * 13 12 9 37 37 H 0.97003 * 120.00086 * 180.02562 * 17 16 14 38 38 H 1.08997 * 113.62107 * 89.11788 * 22 5 4 39 39 H 1.09004 * 113.61106 * 220.02389 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7283 2.0520 -0.1229 5 6 3.5206 3.1738 0.9084 6 7 4.6000 3.2722 1.8939 7 6 4.8398 4.4435 2.5160 8 8 4.1617 5.4159 2.2602 9 6 5.9499 4.5445 3.5302 10 1 5.9681 3.6414 4.1402 11 7 5.7215 5.7126 4.3914 12 6 7.2892 4.6984 2.8068 13 6 8.4269 4.6758 3.8296 14 6 9.7461 4.8281 3.1171 15 1 9.7706 4.9302 2.0422 16 6 10.9217 4.8369 3.8374 17 7 10.8918 4.7119 5.1462 18 14 12.5568 5.0248 2.9541 19 1 12.9003 6.4658 2.8498 20 1 13.6160 4.3176 3.7177 21 1 12.4541 4.4406 1.5928 22 6 2.3009 2.3815 1.4077 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6108 2.3441 -0.6943 27 1 4.0255 2.4134 -1.1073 28 1 4.3572 1.2381 0.2380 29 1 3.2657 4.1351 0.4624 30 1 5.1422 2.4944 2.0987 31 1 5.7003 6.5631 3.8490 32 1 4.8743 5.6053 4.9289 33 1 7.4179 3.8770 2.1020 34 1 7.3042 5.6456 2.2675 35 1 8.2982 5.4973 4.5344 36 1 8.4119 3.7288 4.3689 37 1 11.7189 4.7185 5.6531 38 1 2.5394 1.6578 2.1871 39 1 1.4456 3.0089 1.6589 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707047171.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:58:59 Heat of formation + Delta-G solvation = -57.239870 kcal Electronic energy + Delta-G solvation = -18476.533030 eV Core-core repulsion = 15544.218152 eV Total energy + Delta-G solvation = -2932.314878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29288 -39.43608 -36.74226 -34.80258 -34.43783 -31.91110 -29.81183 -28.39884 -26.79464 -26.53463 -24.72852 -22.34676 -21.41009 -20.79842 -18.62995 -18.25510 -17.94658 -17.02790 -16.72276 -16.43796 -16.33421 -15.73232 -15.45859 -15.04255 -14.54082 -14.38338 -14.25475 -13.95436 -13.81437 -13.57947 -13.55304 -13.38371 -12.80088 -12.64995 -12.47749 -12.23375 -11.97994 -11.75781 -11.73263 -11.61993 -11.23382 -10.97602 -10.83991 -10.47970 -10.08865 -9.59705 -8.68274 -8.12965 -6.23110 0.73671 1.42597 1.43782 1.49508 1.54584 1.61443 2.24991 2.45644 3.20184 3.33094 3.39158 3.59405 3.69801 3.83205 3.89774 4.13927 4.32914 4.34165 4.34754 4.43704 4.63020 4.66747 4.80078 4.82899 4.87618 4.90342 4.96108 5.10218 5.27414 5.51055 5.58595 5.86146 6.00140 6.11834 6.31637 6.46772 6.55502 6.95956 7.15311 7.45026 8.98297 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026750 B = 0.003170 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.471642 B = 8831.620781 C = 9450.412239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.292 6.292 3 C -0.067 4.067 4 C -0.111 4.111 5 C 0.118 3.882 6 N -0.705 5.705 7 C 0.492 3.508 8 O -0.582 6.582 9 C 0.084 3.916 10 H 0.110 0.890 11 N -0.820 5.820 12 C -0.081 4.081 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.930 5.930 18 Si 0.959 3.041 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.132 4.132 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.082 0.918 26 H 0.119 0.881 27 H 0.093 0.907 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.414 0.586 31 H 0.345 0.655 32 H 0.346 0.654 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.005 0.995 36 H -0.006 1.006 37 H 0.262 0.738 38 H 0.096 0.904 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.188 -8.985 -10.535 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.064 6.064 3 C -0.196 4.196 4 C -0.150 4.150 5 C 0.012 3.988 6 N -0.356 5.356 7 C 0.277 3.723 8 O -0.462 6.462 9 C -0.032 4.032 10 H 0.128 0.872 11 N -0.349 5.349 12 C -0.120 4.120 13 C 0.001 3.999 14 C -0.581 4.581 15 H 0.074 0.926 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.784 3.216 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.187 1.187 22 C -0.173 4.173 23 H 0.105 0.895 24 H 0.127 0.873 25 H 0.101 0.899 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.251 0.749 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.023 0.977 36 H 0.013 0.987 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.214 -9.416 -10.231 24.534 hybrid contribution -0.536 0.983 -0.569 1.256 sum -20.750 -8.433 -10.799 24.866 Atomic orbital electron populations 1.23414 0.91752 1.07290 1.05740 1.87057 1.10324 1.11265 1.97734 1.24410 1.00765 0.93547 1.00925 1.23177 0.93815 0.97603 1.00428 1.22476 0.87603 0.98845 0.89924 1.46034 1.35304 1.12680 1.41586 1.22346 0.84933 0.82741 0.82233 1.90628 1.51542 1.38051 1.66000 1.21651 0.92476 0.96751 0.92301 0.87215 1.58971 1.43633 1.04044 1.28222 1.21385 0.91923 1.00719 0.97941 1.18832 0.91447 0.95630 0.93941 1.21744 0.93013 1.49538 0.93817 0.92583 1.25906 1.03137 0.95092 0.95557 1.70106 1.28372 1.51524 1.07073 0.85536 0.78954 0.78251 0.78822 1.20201 1.20795 1.18732 1.23740 0.98452 0.99084 0.96031 0.89492 0.87286 0.89889 0.86251 0.88811 0.88315 0.87881 0.74868 0.84153 0.84050 0.91348 0.93932 0.97677 0.98736 0.92946 0.88515 0.90538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.76 113.37 1.22 0.09 16 2 S -0.29 -4.63 22.17 -56.49 -1.25 -5.88 16 3 C -0.07 -0.94 4.28 31.12 0.13 -0.81 16 4 C -0.11 -1.67 7.42 31.12 0.23 -1.44 16 5 C 0.12 2.24 4.24 45.52 0.19 2.44 16 6 N -0.71 -15.65 5.35 -440.04 -2.36 -18.00 16 7 C 0.49 14.47 7.07 87.66 0.62 15.09 16 8 O -0.58 -20.41 15.85 -3.03 -0.05 -20.46 16 9 C 0.08 2.72 3.15 44.17 0.14 2.86 16 10 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 11 N -0.82 -27.46 8.44 -171.80 -1.45 -28.91 16 12 C -0.08 -3.22 4.78 30.60 0.15 -3.08 16 13 C 0.04 2.00 4.86 29.85 0.15 2.15 16 14 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 15 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.05 5.46 84.66 0.46 0.51 16 17 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 22 C -0.13 -2.09 7.47 31.12 0.23 -1.86 16 23 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 29 H 0.10 2.28 7.46 -2.39 -0.02 2.27 16 30 H 0.41 7.71 8.73 -92.71 -0.81 6.90 16 31 H 0.34 11.84 8.58 -89.69 -0.77 11.07 16 32 H 0.35 9.92 9.06 -89.70 -0.81 9.11 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 35 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 36 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.10 1.60 8.10 -2.39 -0.02 1.58 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -69.09 339.78 -0.37 -69.47 By element: Atomic # 1 Polarization: 29.81 SS G_CDS: -1.33 Total: 28.48 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 3.75 Total: -14.60 kcal Atomic # 7 Polarization: -99.96 SS G_CDS: -3.52 Total: -103.48 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.05 Total: -20.46 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: -4.63 SS G_CDS: -1.25 Total: -5.88 kcal Total: -69.09 -0.37 -69.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707047171.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.228 kcal (2) G-P(sol) polarization free energy of solvation -69.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds