Wall clock time and date at job start Mon Mar 30 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47264 * 2 1 4 4 C 1.53003 * 109.47165 * 119.99831 * 2 1 3 5 5 H 1.09002 * 109.62596 * 53.35811 * 4 2 1 6 6 C 1.53247 * 109.62779 * 292.97726 * 4 2 1 7 7 N 1.46896 * 109.33870 * 186.25985 * 6 4 2 8 8 C 1.46908 * 111.26538 * 63.10766 * 7 6 4 9 9 C 1.53239 * 109.33815 * 296.89080 * 8 7 6 10 10 N 1.47073 * 109.79120 * 173.84964 * 4 2 1 11 11 C 1.34769 * 120.88384 * 351.01330 * 10 4 2 12 12 O 1.21284 * 120.00053 * 4.13409 * 11 10 4 13 13 C 1.50699 * 120.00672 * 184.13672 * 11 10 4 14 14 S 1.80999 * 109.47756 * 179.97438 * 13 11 10 15 15 C 1.76192 * 100.00175 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00297 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00476 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47318 * 89.99877 * 19 17 15 21 21 H 1.48498 * 109.47501 * 210.00367 * 19 17 15 22 22 H 1.48506 * 109.46811 * 330.00277 * 19 17 15 23 23 H 1.09006 * 109.47093 * 60.00146 * 1 2 3 24 24 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47174 * 300.00066 * 1 2 3 26 26 H 1.09002 * 109.47174 * 239.99934 * 2 1 3 27 27 H 1.09000 * 109.46968 * 169.38414 * 3 2 1 28 28 H 1.08996 * 109.46602 * 289.38674 * 3 2 1 29 29 H 1.09005 * 109.46707 * 49.38695 * 3 2 1 30 30 H 1.09003 * 109.48808 * 66.30519 * 6 4 2 31 31 H 1.08994 * 109.51219 * 306.24153 * 6 4 2 32 32 H 1.00895 * 111.00409 * 298.96120 * 7 6 4 33 33 H 1.08997 * 109.49341 * 56.85648 * 8 7 6 34 34 H 1.08999 * 109.49002 * 176.93311 * 8 7 6 35 35 H 1.09000 * 109.62503 * 173.53915 * 9 8 7 36 36 H 1.08996 * 109.62822 * 294.11814 * 9 8 7 37 37 H 1.09004 * 109.46579 * 300.00068 * 13 11 10 38 38 H 1.09010 * 109.47124 * 59.99427 * 13 11 10 39 39 H 0.96996 * 120.00250 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5843 -1.7094 1.3132 6 6 1.6804 0.0931 2.4967 7 7 2.3003 -0.5248 3.6764 8 6 3.7662 -0.5006 3.5822 9 6 4.2112 -1.3392 2.3793 10 7 3.5032 -0.8551 1.1846 11 6 4.1774 -0.5419 0.0605 12 8 3.5875 -0.0730 -0.8898 13 6 5.6644 -0.7743 -0.0159 14 16 6.2733 -0.2582 -1.6404 15 6 7.9860 -0.6290 -1.4573 16 1 8.3518 -1.0486 -0.5317 17 6 8.8650 -0.3830 -2.5028 18 7 8.4193 0.1279 -3.6311 19 14 10.6807 -0.7768 -2.3090 20 1 10.9349 -2.1712 -2.7520 21 1 11.4817 0.1597 -3.1376 22 1 11.0691 -0.6320 -0.8829 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1134 1.4483 0.1893 28 1 1.8395 1.8987 -0.9694 29 1 1.5304 2.0080 0.7802 30 1 0.5975 0.1088 2.6210 31 1 2.0484 1.1129 2.3843 32 1 1.9622 -1.4657 3.8116 33 1 4.1055 0.5273 3.4546 34 1 4.1961 -0.9154 4.4939 35 1 5.2865 -1.2323 2.2362 36 1 3.9644 -2.3868 2.5519 37 1 6.1631 -0.1941 0.7606 38 1 5.8746 -1.8338 0.1307 39 1 9.0336 0.3003 -4.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707685851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:43 Heat of formation + Delta-G solvation = -10.948265 kcal Electronic energy + Delta-G solvation = -19820.148606 eV Core-core repulsion = 16889.841083 eV Total energy + Delta-G solvation = -2930.307524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.73926 -37.54841 -35.38187 -33.51264 -32.44953 -30.03119 -29.21376 -26.96062 -25.82766 -25.43333 -24.06147 -22.02751 -20.39455 -18.95375 -17.64854 -16.55810 -15.90145 -15.78010 -15.47534 -15.10168 -14.82396 -14.20357 -14.12790 -13.84932 -13.40092 -13.15870 -12.95183 -12.76412 -12.52734 -12.25257 -11.91297 -11.88521 -11.36974 -11.17962 -11.08703 -11.04126 -10.78691 -10.67180 -10.59051 -10.41210 -9.82068 -9.28609 -9.08518 -8.67063 -8.25217 -7.99938 -6.52096 -6.23849 -3.94363 2.86092 3.01177 3.20597 3.23708 3.28454 3.55763 4.04146 4.18377 4.68309 4.71668 4.89883 4.93930 5.01791 5.11462 5.13568 5.24682 5.28114 5.37464 5.48111 5.59155 5.64073 5.71581 5.76725 5.82544 5.90072 5.96322 6.07578 6.09205 6.17153 6.34640 6.48068 6.70561 6.74769 6.91011 7.11529 7.54647 7.57599 8.32847 8.57649 9.21641 10.83563 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.004849 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.138298 B = 5772.910610 C = 6520.267635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.125 4.125 4 C 0.118 3.882 5 H 0.064 0.936 6 C 0.042 3.958 7 N -0.685 5.685 8 C 0.043 3.957 9 C 0.070 3.930 10 N -0.617 5.617 11 C 0.531 3.469 12 O -0.497 6.497 13 C -0.152 4.152 14 S -0.059 6.059 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.114 0.886 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.339 0.661 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.487 -2.536 13.765 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.116 4.116 3 C -0.182 4.182 4 C 0.013 3.987 5 H 0.082 0.918 6 C -0.088 4.088 7 N -0.313 5.313 8 C -0.088 4.088 9 C -0.055 4.055 10 N -0.354 5.354 11 C 0.320 3.680 12 O -0.372 6.372 13 C -0.303 4.303 14 S 0.168 5.832 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.156 0.844 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.343 -1.185 12.566 18.367 hybrid contribution 2.096 -1.619 0.618 2.719 sum -11.247 -2.804 13.184 17.555 Atomic orbital electron populations 1.21986 0.96315 1.01031 1.01568 1.21733 0.93561 0.97937 0.98362 1.21892 1.01433 0.94500 1.00347 1.22024 0.80107 0.98855 0.97690 0.91794 1.22632 0.99764 0.99292 0.87106 1.60662 1.05960 1.25191 1.39491 1.22421 0.88377 1.01154 0.96837 1.22472 0.98874 0.98040 0.86143 1.48111 1.06551 1.67815 1.12922 1.20207 0.88979 0.77038 0.81806 1.90697 1.67974 1.41570 1.36963 1.23604 0.94220 1.04689 1.07755 1.85344 1.06247 1.82949 1.08670 1.22857 0.92892 1.49279 1.03377 0.91027 1.24980 0.99469 0.94598 0.94453 1.70014 1.35600 1.40902 1.03771 0.86180 0.82728 0.78356 0.78309 1.20267 1.20723 1.19690 0.92445 0.93279 0.93189 0.86827 0.91827 0.92961 0.94915 0.89769 0.89750 0.84398 0.90246 0.89507 0.88765 0.91667 0.89576 0.89567 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.97 37.16 0.33 -1.30 16 2 C -0.10 -1.33 2.16 -90.62 -0.20 -1.53 16 3 C -0.12 -1.87 6.99 37.16 0.26 -1.61 16 4 C 0.12 1.44 2.77 -67.49 -0.19 1.25 16 5 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 6 C 0.04 0.44 5.30 -3.70 -0.02 0.42 16 7 N -0.69 -6.46 6.85 -113.50 -0.78 -7.24 16 8 C 0.04 0.40 6.70 -3.70 -0.02 0.38 16 9 C 0.07 0.75 6.47 -3.60 -0.02 0.73 16 10 N -0.62 -8.57 2.91 -164.93 -0.48 -9.05 16 11 C 0.53 9.66 6.55 -10.99 -0.07 9.59 16 12 O -0.50 -10.30 9.60 5.55 0.05 -10.25 16 13 C -0.15 -3.04 4.57 36.00 0.16 -2.88 16 14 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 15 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 16 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 17 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 19 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.47 6.79 -51.93 -0.35 0.12 16 26 H 0.11 1.95 5.77 -52.68 -0.30 1.65 16 27 H 0.06 1.12 5.44 -51.93 -0.28 0.84 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.03 0.42 6.84 -51.93 -0.36 0.06 16 30 H 0.08 0.77 6.96 -51.93 -0.36 0.41 16 31 H 0.08 1.01 6.23 -51.93 -0.32 0.69 16 32 H 0.34 2.70 8.83 -39.29 -0.35 2.35 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.05 6.04 -51.93 -0.31 0.73 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.61 7.49 -51.91 -0.39 1.22 16 38 H 0.09 1.63 8.13 -51.91 -0.42 1.21 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 311.12 15.07 4.69 4.69 Total: -1.00 -31.79 311.12 -8.54 -40.32 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.95 Total: 2.12 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: 0.43 Total: -7.79 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: -0.52 Total: -41.58 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.05 Total: -10.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.79 -8.54 -40.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707685851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.376 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds