Wall clock time and date at job start Mon Mar 30 2020 05:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47264 * 2 1 4 4 C 1.53003 * 109.47165 * 119.99831 * 2 1 3 5 5 H 1.09002 * 109.62596 * 53.35811 * 4 2 1 6 6 C 1.53247 * 109.62779 * 292.97726 * 4 2 1 7 7 N 1.46896 * 109.33870 * 186.25985 * 6 4 2 8 8 C 1.46908 * 111.26538 * 63.10766 * 7 6 4 9 9 C 1.53239 * 109.33815 * 296.89080 * 8 7 6 10 10 N 1.47073 * 109.79120 * 173.84964 * 4 2 1 11 11 C 1.34769 * 120.88384 * 351.01330 * 10 4 2 12 12 O 1.21284 * 120.00053 * 4.13409 * 11 10 4 13 13 C 1.50699 * 120.00672 * 184.13672 * 11 10 4 14 14 S 1.80999 * 109.47756 * 179.97438 * 13 11 10 15 15 C 1.76192 * 100.00175 * 179.97438 * 14 13 11 16 16 H 1.08006 * 120.00297 * 0.02562 * 15 14 13 17 17 C 1.38796 * 120.00208 * 179.97438 * 15 14 13 18 18 N 1.31632 * 119.99906 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00476 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47318 * 89.99877 * 19 17 15 21 21 H 1.48498 * 109.47501 * 210.00367 * 19 17 15 22 22 H 1.48506 * 109.46811 * 330.00277 * 19 17 15 23 23 H 1.09006 * 109.47093 * 60.00146 * 1 2 3 24 24 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47174 * 300.00066 * 1 2 3 26 26 H 1.09002 * 109.47174 * 239.99934 * 2 1 3 27 27 H 1.09000 * 109.46968 * 169.38414 * 3 2 1 28 28 H 1.08996 * 109.46602 * 289.38674 * 3 2 1 29 29 H 1.09005 * 109.46707 * 49.38695 * 3 2 1 30 30 H 1.09003 * 109.48808 * 66.30519 * 6 4 2 31 31 H 1.08994 * 109.51219 * 306.24153 * 6 4 2 32 32 H 1.00895 * 111.00409 * 298.96120 * 7 6 4 33 33 H 1.08997 * 109.49341 * 56.85648 * 8 7 6 34 34 H 1.08999 * 109.49002 * 176.93311 * 8 7 6 35 35 H 1.09000 * 109.62503 * 173.53915 * 9 8 7 36 36 H 1.08996 * 109.62822 * 294.11814 * 9 8 7 37 37 H 1.09004 * 109.46579 * 300.00068 * 13 11 10 38 38 H 1.09010 * 109.47124 * 59.99427 * 13 11 10 39 39 H 0.96996 * 120.00250 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5843 -1.7094 1.3132 6 6 1.6804 0.0931 2.4967 7 7 2.3003 -0.5248 3.6764 8 6 3.7662 -0.5006 3.5822 9 6 4.2112 -1.3392 2.3793 10 7 3.5032 -0.8551 1.1846 11 6 4.1774 -0.5419 0.0605 12 8 3.5875 -0.0730 -0.8898 13 6 5.6644 -0.7743 -0.0159 14 16 6.2733 -0.2582 -1.6404 15 6 7.9860 -0.6290 -1.4573 16 1 8.3518 -1.0486 -0.5317 17 6 8.8650 -0.3830 -2.5028 18 7 8.4193 0.1279 -3.6311 19 14 10.6807 -0.7768 -2.3090 20 1 10.9349 -2.1712 -2.7520 21 1 11.4817 0.1597 -3.1376 22 1 11.0691 -0.6320 -0.8829 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 3.1134 1.4483 0.1893 28 1 1.8395 1.8987 -0.9694 29 1 1.5304 2.0080 0.7802 30 1 0.5975 0.1088 2.6210 31 1 2.0484 1.1129 2.3843 32 1 1.9622 -1.4657 3.8116 33 1 4.1055 0.5273 3.4546 34 1 4.1961 -0.9154 4.4939 35 1 5.2865 -1.2323 2.2362 36 1 3.9644 -2.3868 2.5519 37 1 6.1631 -0.1941 0.7606 38 1 5.8746 -1.8338 0.1307 39 1 9.0336 0.3003 -4.3616 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707685851.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:43 Heat of formation + Delta-G solvation = -33.650430 kcal Electronic energy + Delta-G solvation = -19821.133046 eV Core-core repulsion = 16889.841083 eV Total energy + Delta-G solvation = -2931.291963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91403 -38.70379 -36.43069 -34.63989 -34.56463 -31.05609 -30.60774 -28.05213 -27.72300 -26.71185 -25.01362 -22.98493 -21.54532 -20.32706 -19.45127 -17.81011 -17.11392 -17.02181 -16.89583 -16.50091 -16.10904 -15.74030 -15.19183 -15.04815 -14.67206 -14.50981 -14.35526 -13.91046 -13.79972 -13.41792 -13.17021 -12.98095 -12.93666 -12.86885 -12.61931 -12.20475 -12.04096 -11.75726 -11.70589 -11.68831 -11.57448 -11.15756 -10.35024 -10.25636 -9.97687 -8.98248 -8.67671 -8.36659 -6.14409 1.24197 1.40622 1.44182 1.54657 1.60261 2.06322 2.26007 2.97602 3.23016 3.26908 3.63732 3.80208 4.01030 4.03644 4.07204 4.15823 4.23654 4.35540 4.37095 4.38645 4.45376 4.67252 4.77437 4.79363 4.82930 4.99436 5.03277 5.06224 5.13761 5.31527 5.39202 5.41074 5.51766 5.77042 5.94237 6.17326 6.29898 6.47630 7.04753 7.22159 8.72518 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028885 B = 0.004849 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.138298 B = 5772.910610 C = 6520.267635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.116 4.116 4 C 0.118 3.882 5 H 0.082 0.918 6 C 0.052 3.948 7 N -0.682 5.682 8 C 0.049 3.951 9 C 0.063 3.937 10 N -0.608 5.608 11 C 0.527 3.473 12 O -0.531 6.531 13 C -0.126 4.126 14 S -0.144 6.144 15 C -0.548 4.548 16 H 0.080 0.920 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 0.997 3.003 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.258 1.258 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.032 0.968 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.067 0.933 32 H 0.352 0.648 33 H 0.063 0.937 34 H 0.114 0.886 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -3.766 16.700 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 C -0.173 4.173 4 C 0.014 3.986 5 H 0.100 0.900 6 C -0.078 4.078 7 N -0.311 5.311 8 C -0.081 4.081 9 C -0.061 4.061 10 N -0.343 5.343 11 C 0.314 3.686 12 O -0.409 6.409 13 C -0.277 4.277 14 S 0.083 5.917 15 C -0.696 4.696 16 H 0.098 0.902 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.819 3.181 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.182 1.182 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.171 0.829 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.700 -2.438 15.556 20.872 hybrid contribution 2.098 -1.249 -0.213 2.451 sum -11.602 -3.687 15.343 19.586 Atomic orbital electron populations 1.21903 0.93673 1.02166 1.02339 1.21547 0.95696 0.96556 0.97647 1.21777 0.99679 0.95953 0.99898 1.22208 0.78684 0.99927 0.97812 0.90025 1.22544 1.01021 0.97980 0.86298 1.60645 1.05796 1.26171 1.38443 1.22411 0.88516 1.00112 0.97097 1.22772 0.98467 0.99596 0.85215 1.48106 1.07542 1.66280 1.12380 1.19936 0.88219 0.77566 0.82837 1.90726 1.68223 1.43306 1.38622 1.23417 0.95879 1.05221 1.03161 1.85487 1.07314 1.83988 1.14927 1.23194 0.93180 1.49286 1.03913 0.90190 1.26102 1.04920 0.94074 0.93858 1.70177 1.37561 1.42199 1.04834 0.84975 0.75844 0.78366 0.78942 1.19268 1.20234 1.18204 0.93057 0.91948 0.91050 0.90803 0.94916 0.94973 0.92586 0.87579 0.91441 0.82871 0.91855 0.86785 0.89221 0.89305 0.88304 0.88296 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 8.97 71.98 0.65 -2.19 16 2 C -0.10 -2.59 2.16 -10.79 -0.02 -2.61 16 3 C -0.12 -3.56 6.99 71.98 0.50 -3.05 16 4 C 0.12 2.64 2.77 44.97 0.12 2.76 16 5 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.05 0.93 5.30 86.39 0.46 1.38 16 7 N -0.68 -10.32 6.85 -513.01 -3.52 -13.84 16 8 C 0.05 0.77 6.70 86.38 0.58 1.35 16 9 C 0.06 1.20 6.47 86.35 0.56 1.76 16 10 N -0.61 -16.15 2.91 -794.10 -2.31 -18.47 16 11 C 0.53 19.49 6.55 87.66 0.57 20.06 16 12 O -0.53 -23.15 9.60 -3.04 -0.03 -23.18 16 13 C -0.13 -5.08 4.57 71.24 0.33 -4.75 16 14 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 15 C -0.55 -31.45 9.50 67.95 0.65 -30.81 16 16 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 17 C 0.02 0.87 5.49 84.86 0.47 1.34 16 18 N -0.91 -56.15 13.22 21.65 0.29 -55.86 16 19 Si 1.00 43.65 29.55 68.60 2.03 45.68 16 20 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 21 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 23 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.12 6.79 -2.39 -0.02 1.10 16 26 H 0.07 2.65 5.77 -14.32 -0.08 2.56 16 27 H 0.03 1.19 5.44 -2.39 -0.01 1.18 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.40 6.84 -2.38 -0.02 1.38 16 30 H 0.11 1.48 6.96 -2.39 -0.02 1.47 16 31 H 0.07 1.47 6.23 -2.39 -0.01 1.46 16 32 H 0.35 4.01 8.83 -89.70 -0.79 3.22 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.80 6.04 -2.39 -0.01 1.79 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.10 3.70 7.49 -2.39 -0.02 3.68 16 38 H 0.10 3.71 8.13 -2.39 -0.02 3.69 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -72.49 311.12 0.34 -72.15 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.19 Total: 17.48 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.86 Total: -14.76 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -5.54 Total: -88.17 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.03 Total: -23.18 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -72.49 0.34 -72.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707685851.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.501 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds